Wall clock time and date at job start Tue Mar 31 2020 13:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.88915 * 322.56925 * 10 9 7 12 12 C 1.55160 * 111.00678 * 198.64617 * 10 9 7 13 13 C 1.54317 * 102.94328 * 206.42332 * 12 10 9 14 14 N 1.47018 * 107.27559 * 22.19141 * 13 12 10 15 15 C 1.34777 * 125.65083 * 181.09544 * 14 13 12 16 16 O 1.21704 * 120.00030 * 179.97438 * 15 14 13 17 17 C 1.46580 * 119.99656 * 359.95730 * 15 14 13 18 18 C 1.36121 * 125.45073 * 179.71352 * 17 15 14 19 19 C 1.38274 * 114.09568 * 179.85915 * 18 17 15 20 20 C 1.35238 * 113.93110 * 0.42217 * 19 18 17 21 21 S 1.70762 * 111.10473 * 359.77973 * 20 19 18 22 22 C 1.51713 * 124.33970 * 179.80520 * 20 19 18 23 23 C 1.53107 * 108.74336 * 343.40483 * 22 20 19 24 24 C 1.53141 * 108.98434 * 50.10738 * 23 22 20 25 25 C 1.52331 * 123.07642 * 180.19217 * 19 18 17 26 26 C 1.47429 * 108.70189 * 1.05641 * 14 13 12 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09002 * 110.71833 * 324.78918 * 12 10 9 30 30 H 1.09000 * 110.72096 * 88.05277 * 12 10 9 31 31 H 1.09003 * 109.88379 * 262.77417 * 13 12 10 32 32 H 1.08999 * 109.88009 * 141.61258 * 13 12 10 33 33 H 1.07994 * 122.95317 * 0.04492 * 18 17 15 34 34 H 1.09003 * 109.58674 * 103.23140 * 22 20 19 35 35 H 1.08999 * 109.59116 * 223.66851 * 22 20 19 36 36 H 1.08999 * 109.57041 * 290.24798 * 23 22 20 37 37 H 1.09002 * 109.54579 * 169.95232 * 23 22 20 38 38 H 1.08996 * 109.51329 * 169.21068 * 24 23 22 39 39 H 1.09001 * 109.55251 * 49.08671 * 24 23 22 40 40 H 1.09004 * 109.57984 * 282.67872 * 25 19 18 41 41 H 1.09003 * 109.58243 * 43.08370 * 25 19 18 42 42 H 1.08995 * 110.36765 * 217.02980 * 26 14 13 43 43 H 1.09007 * 110.45679 * 94.75599 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9531 -3.5888 -0.6198 12 6 1.1478 -4.8245 -0.4659 13 6 1.7840 -6.0521 0.2193 14 7 2.5581 -5.5587 1.3677 15 6 3.2820 -6.3197 2.2123 16 8 3.8862 -5.8011 3.1328 17 6 3.3414 -7.7720 2.0224 18 6 4.0396 -8.6423 2.8021 19 6 3.9284 -9.9641 2.4118 20 6 3.1526 -10.1503 1.3199 21 16 2.5295 -8.6667 0.7482 22 6 2.8737 -11.5012 0.6884 23 6 3.9061 -12.5076 1.2037 24 6 3.9621 -12.4257 2.7318 25 6 4.6212 -11.1076 3.1418 26 6 2.4121 -4.0936 1.4418 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 0.1247 -4.6769 -0.1202 30 1 1.1781 -4.9293 -1.5505 31 1 2.4441 -6.5661 -0.4794 32 1 1.0033 -6.7309 0.5626 33 1 4.6262 -8.3283 3.6527 34 1 1.8716 -11.8323 0.9611 35 1 2.9520 -11.4210 -0.3959 36 1 4.8859 -12.2700 0.7895 37 1 3.6158 -13.5143 0.9028 38 1 4.5452 -13.2606 3.1201 39 1 2.9510 -12.4683 3.1367 40 1 5.6769 -11.1274 2.8710 41 1 4.5207 -10.9681 4.2182 42 1 3.3488 -3.6346 1.7581 43 1 1.6083 -3.8250 2.1274 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970642228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:04 Heat of formation + Delta-G solvation = -3.244011 kcal Electronic energy + Delta-G solvation = -24055.566209 eV Core-core repulsion = 20612.688205 eV Total energy + Delta-G solvation = -3442.878004 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.96216 -39.30882 -37.38466 -35.15824 -34.48613 -31.75294 -31.25276 -29.65017 -29.56547 -27.43786 -24.86336 -24.05486 -23.48618 -22.64338 -21.45603 -20.32589 -19.63634 -18.11339 -18.06444 -17.47649 -16.29001 -16.05211 -15.59210 -15.28332 -14.77053 -14.54159 -14.32487 -14.23204 -13.72034 -13.42874 -13.34984 -13.24927 -13.08574 -12.92028 -12.80271 -12.46924 -12.34086 -11.72429 -11.66619 -11.29629 -11.24990 -11.17400 -11.01649 -10.80848 -10.69144 -10.47478 -10.35344 -10.01536 -9.92545 -9.25205 -9.05849 -8.85728 -8.51033 -8.37488 -7.18282 -6.18504 -3.21078 0.42279 1.34301 1.79852 2.19854 3.05527 3.26077 3.50535 3.53725 3.70816 4.26742 4.38734 4.48561 4.57433 4.60680 4.76131 4.81181 4.82081 5.03882 5.09831 5.14184 5.18293 5.27455 5.37421 5.39042 5.44800 5.55118 5.56930 5.61728 5.64960 5.69558 5.78882 5.83637 5.90951 5.91704 6.09476 6.11484 6.22834 6.29188 6.39643 6.50625 6.75401 7.61855 7.73972 8.22418 8.67224 9.10076 9.96766 10.09163 11.29268 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.035555 B = 0.002545 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.332806 B =11001.008736 C =11553.685395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.340 4.340 8 H 0.067 0.933 9 N -0.722 5.722 10 C 0.178 3.822 11 H 0.067 0.933 12 C -0.135 4.135 13 C 0.092 3.908 14 N -0.609 5.609 15 C 0.598 3.402 16 O -0.535 6.535 17 C -0.256 4.256 18 C -0.055 4.055 19 C -0.119 4.119 20 C -0.217 4.217 21 S 0.212 5.788 22 C -0.048 4.048 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.057 4.057 26 C 0.085 3.915 27 H 0.255 0.745 28 H 0.371 0.629 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -27.749 0.540 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.238 4.238 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.470 4.470 8 H 0.085 0.915 9 N -0.364 5.364 10 C 0.065 3.935 11 H 0.085 0.915 12 C -0.174 4.174 13 C -0.033 4.033 14 N -0.343 5.343 15 C 0.386 3.614 16 O -0.414 6.414 17 C -0.376 4.376 18 C -0.088 4.088 19 C -0.131 4.131 20 C -0.336 4.336 21 S 0.483 5.517 22 C -0.087 4.087 23 C -0.154 4.154 24 C -0.157 4.157 25 C -0.096 4.096 26 C -0.040 4.040 27 H 0.066 0.934 28 H 0.205 0.795 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.167 0.833 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.841 -25.353 -0.173 25.811 hybrid contribution 0.822 -2.166 1.288 2.651 sum 5.663 -27.518 1.115 28.117 Atomic orbital electron populations 1.70905 1.06064 1.28474 1.52948 1.25827 0.96997 1.01121 0.99837 0.83244 0.74267 0.75439 0.76016 1.20970 1.22081 1.22119 1.20053 0.92173 0.85509 1.49282 0.91465 1.42298 1.04834 1.00342 1.88900 1.21251 0.94590 0.85565 0.92064 0.91491 1.22883 1.00232 0.93722 1.00587 1.22110 0.95166 0.97718 0.88259 1.48379 1.47927 1.09494 1.28462 1.16594 0.79039 0.84023 0.81731 1.90827 1.45522 1.73381 1.31664 1.24301 1.10973 0.97452 1.04901 1.20555 0.97786 0.90940 0.99545 1.19452 1.01785 0.94576 0.97324 1.24986 1.05110 1.01769 1.01724 1.83315 1.46757 0.93867 1.27772 1.20362 0.99946 0.88989 0.99431 1.21558 0.99375 0.98487 0.95999 1.21540 1.01365 0.97005 0.95811 1.20532 0.98735 0.91127 0.99178 1.23423 1.02244 0.76427 1.01892 0.93351 0.79546 0.90301 0.89794 0.91046 0.91172 0.83343 0.90125 0.90382 0.91417 0.91171 0.91365 0.91612 0.90613 0.90578 0.90707 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.46 13.70 55.49 0.76 -27.70 16 2 C -0.04 -1.14 5.50 -17.43 -0.10 -1.23 16 3 Si 1.08 25.70 29.92 -169.99 -5.09 20.61 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.34 -9.33 9.98 -15.06 -0.15 -9.48 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.39 5.27 -51.35 -0.27 -17.66 16 10 C 0.18 3.43 3.69 -65.79 -0.24 3.19 16 11 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 12 C -0.14 -1.99 6.58 -24.90 -0.16 -2.16 16 13 C 0.09 1.23 5.17 -3.07 -0.02 1.21 16 14 N -0.61 -10.25 3.33 -172.10 -0.57 -10.82 16 15 C 0.60 10.56 7.82 -12.90 -0.10 10.46 16 16 O -0.53 -11.29 17.09 5.19 0.09 -11.20 16 17 C -0.26 -3.63 6.36 -36.98 -0.24 -3.87 16 18 C -0.06 -0.71 9.80 -40.33 -0.40 -1.10 16 19 C -0.12 -1.25 5.75 -104.87 -0.60 -1.85 16 20 C -0.22 -2.13 6.15 -34.88 -0.21 -2.34 16 21 S 0.21 2.26 18.36 -107.50 -1.97 0.28 16 22 C -0.05 -0.34 6.22 -27.33 -0.17 -0.51 16 23 C -0.12 -0.69 5.93 -26.60 -0.16 -0.85 16 24 C -0.12 -0.75 5.89 -26.68 -0.16 -0.90 16 25 C -0.06 -0.44 6.13 -27.09 -0.17 -0.61 16 26 C 0.09 1.65 6.60 -2.53 -0.02 1.64 16 27 H 0.26 7.55 6.77 -40.82 -0.28 7.27 16 28 H 0.37 9.08 6.54 -40.82 -0.27 8.81 16 29 H 0.08 1.16 8.00 -51.93 -0.42 0.74 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.84 6.83 -51.93 -0.35 0.48 16 32 H 0.07 0.82 6.99 -51.93 -0.36 0.46 16 33 H 0.15 1.88 8.05 -52.49 -0.42 1.45 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.59 8.04 -51.93 -0.42 1.17 16 43 H 0.07 1.43 8.14 -51.92 -0.42 1.00 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -33.05 355.05 -10.96 -44.00 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.37 Total: 5.54 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.88 Total: -8.40 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.08 Total: -56.19 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.09 Total: 20.61 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.97 Total: 0.28 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.05 -10.96 -44.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970642228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.760 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds