Wall clock time and date at job start Tue Mar 31 2020 13:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.88915 * 322.56925 * 10 9 7 12 12 C 1.55160 * 111.00678 * 198.64617 * 10 9 7 13 13 C 1.54317 * 102.94328 * 206.42332 * 12 10 9 14 14 N 1.47018 * 107.27559 * 22.19141 * 13 12 10 15 15 C 1.34777 * 125.65083 * 181.09544 * 14 13 12 16 16 O 1.21704 * 120.00030 * 179.97438 * 15 14 13 17 17 C 1.46580 * 119.99656 * 359.95730 * 15 14 13 18 18 C 1.36121 * 125.45073 * 179.71352 * 17 15 14 19 19 C 1.38274 * 114.09568 * 179.85915 * 18 17 15 20 20 C 1.35238 * 113.93110 * 0.42217 * 19 18 17 21 21 S 1.70762 * 111.10473 * 359.77973 * 20 19 18 22 22 C 1.51713 * 124.33970 * 179.80520 * 20 19 18 23 23 C 1.53107 * 108.74336 * 343.40483 * 22 20 19 24 24 C 1.53141 * 108.98434 * 50.10738 * 23 22 20 25 25 C 1.52331 * 123.07642 * 180.19217 * 19 18 17 26 26 C 1.47429 * 108.70189 * 1.05641 * 14 13 12 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.09002 * 110.71833 * 324.78918 * 12 10 9 30 30 H 1.09000 * 110.72096 * 88.05277 * 12 10 9 31 31 H 1.09003 * 109.88379 * 262.77417 * 13 12 10 32 32 H 1.08999 * 109.88009 * 141.61258 * 13 12 10 33 33 H 1.07994 * 122.95317 * 0.04492 * 18 17 15 34 34 H 1.09003 * 109.58674 * 103.23140 * 22 20 19 35 35 H 1.08999 * 109.59116 * 223.66851 * 22 20 19 36 36 H 1.08999 * 109.57041 * 290.24798 * 23 22 20 37 37 H 1.09002 * 109.54579 * 169.95232 * 23 22 20 38 38 H 1.08996 * 109.51329 * 169.21068 * 24 23 22 39 39 H 1.09001 * 109.55251 * 49.08671 * 24 23 22 40 40 H 1.09004 * 109.57984 * 282.67872 * 25 19 18 41 41 H 1.09003 * 109.58243 * 43.08370 * 25 19 18 42 42 H 1.08995 * 110.36765 * 217.02980 * 26 14 13 43 43 H 1.09007 * 110.45679 * 94.75599 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9531 -3.5888 -0.6198 12 6 1.1478 -4.8245 -0.4659 13 6 1.7840 -6.0521 0.2193 14 7 2.5581 -5.5587 1.3677 15 6 3.2820 -6.3197 2.2123 16 8 3.8862 -5.8011 3.1328 17 6 3.3414 -7.7720 2.0224 18 6 4.0396 -8.6423 2.8021 19 6 3.9284 -9.9641 2.4118 20 6 3.1526 -10.1503 1.3199 21 16 2.5295 -8.6667 0.7482 22 6 2.8737 -11.5012 0.6884 23 6 3.9061 -12.5076 1.2037 24 6 3.9621 -12.4257 2.7318 25 6 4.6212 -11.1076 3.1418 26 6 2.4121 -4.0936 1.4418 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 0.1247 -4.6769 -0.1202 30 1 1.1781 -4.9293 -1.5505 31 1 2.4441 -6.5661 -0.4794 32 1 1.0033 -6.7309 0.5626 33 1 4.6262 -8.3283 3.6527 34 1 1.8716 -11.8323 0.9611 35 1 2.9520 -11.4210 -0.3959 36 1 4.8859 -12.2700 0.7895 37 1 3.6158 -13.5143 0.9028 38 1 4.5452 -13.2606 3.1201 39 1 2.9510 -12.4683 3.1367 40 1 5.6769 -11.1274 2.8710 41 1 4.5207 -10.9681 4.2182 42 1 3.3488 -3.6346 1.7581 43 1 1.6083 -3.8250 2.1274 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970642228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:03 Heat of formation + Delta-G solvation = -23.088417 kcal Electronic energy + Delta-G solvation = -24056.426727 eV Core-core repulsion = 20612.688205 eV Total energy + Delta-G solvation = -3443.738522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27406 -40.15014 -38.81436 -36.35534 -35.93349 -33.50495 -31.84377 -31.20467 -30.60336 -28.87890 -26.27102 -25.16182 -24.65491 -23.87651 -22.36337 -21.75913 -20.66100 -19.59657 -19.17240 -18.92480 -17.52238 -17.26586 -16.89780 -16.39694 -16.05119 -15.77214 -15.53078 -15.46882 -14.92165 -14.73310 -14.60744 -14.18355 -14.09976 -13.88471 -13.73731 -13.63614 -13.46100 -13.10273 -12.79710 -12.72152 -12.43137 -12.37644 -12.06703 -11.89866 -11.86519 -11.72875 -11.52683 -11.38577 -11.29796 -11.15531 -11.02258 -10.06299 -9.53794 -9.32427 -9.22448 -8.43164 -5.39790 -0.55406 0.42660 0.91691 1.23610 1.57814 1.66672 1.72287 1.83580 2.02136 2.68021 3.26222 3.39475 3.41119 3.65967 3.75155 3.86297 3.94770 4.02185 4.03014 4.12234 4.16195 4.26444 4.34536 4.42280 4.44453 4.61931 4.65909 4.66623 4.76109 4.80196 4.85258 4.94912 5.02236 5.03320 5.06889 5.12990 5.19639 5.23694 5.37714 5.46179 5.52069 5.56826 6.28766 6.47158 6.85645 7.02530 7.91641 8.01152 9.08443 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.035555 B = 0.002545 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.332806 B =11001.008736 C =11553.685395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.097 4.097 3 Si 1.125 2.875 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.338 4.338 8 H 0.064 0.936 9 N -0.733 5.733 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.122 4.122 13 C 0.094 3.906 14 N -0.610 5.610 15 C 0.593 3.407 16 O -0.586 6.586 17 C -0.300 4.300 18 C -0.053 4.053 19 C -0.134 4.134 20 C -0.203 4.203 21 S 0.255 5.745 22 C -0.052 4.052 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.058 4.058 26 C 0.095 3.905 27 H 0.247 0.753 28 H 0.367 0.633 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 -31.063 -1.012 31.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.289 4.289 3 Si 0.949 3.051 4 H -0.217 1.217 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.082 0.918 9 N -0.374 5.374 10 C 0.061 3.939 11 H 0.081 0.919 12 C -0.160 4.160 13 C -0.029 4.029 14 N -0.343 5.343 15 C 0.384 3.616 16 O -0.469 6.469 17 C -0.420 4.420 18 C -0.088 4.088 19 C -0.146 4.146 20 C -0.322 4.322 21 S 0.527 5.473 22 C -0.091 4.091 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.097 4.097 26 C -0.031 4.031 27 H 0.058 0.942 28 H 0.200 0.800 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.156 0.844 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.935 -28.732 -1.756 29.205 hybrid contribution 0.832 -1.313 1.788 2.369 sum 5.766 -30.045 0.033 30.593 Atomic orbital electron populations 1.70998 1.07035 1.28125 1.55587 1.27138 0.97127 1.04502 1.00102 0.82667 0.73465 0.71843 0.77096 1.21676 1.20980 1.20040 1.20335 0.92289 0.86913 1.47401 0.91778 1.42399 1.04795 1.01137 1.89075 1.21382 0.95296 0.85461 0.91757 0.91920 1.22828 0.99234 0.91660 1.02289 1.22327 0.95802 0.97497 0.87317 1.48378 1.48286 1.08144 1.29458 1.17127 0.78062 0.85551 0.80875 1.90779 1.47624 1.74750 1.33751 1.24016 1.14221 0.95667 1.08095 1.20719 0.96996 0.92092 0.98955 1.19660 1.02622 0.94192 0.98090 1.25500 1.03118 1.02844 1.00773 1.82931 1.45485 0.93288 1.25585 1.20592 1.01083 0.87260 1.00171 1.21588 0.98939 0.99251 0.95517 1.21556 1.01343 0.96383 0.96263 1.20623 0.98955 0.91065 0.99028 1.23004 1.00006 0.78609 1.01457 0.94237 0.79996 0.90016 0.87169 0.88650 0.88789 0.84446 0.88647 0.88837 0.91686 0.89056 0.89727 0.91780 0.90095 0.90478 0.93561 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.87 13.70 21.65 0.30 -59.57 16 2 C -0.10 -5.58 5.50 84.86 0.47 -5.12 16 3 Si 1.12 52.21 29.92 68.60 2.05 54.26 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.34 -18.89 9.98 84.03 0.84 -18.05 16 8 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 9 N -0.73 -35.92 5.27 -316.39 -1.67 -37.59 16 10 C 0.17 6.69 3.69 46.39 0.17 6.86 16 11 H 0.06 2.50 8.13 -2.39 -0.02 2.48 16 12 C -0.12 -3.36 6.58 31.78 0.21 -3.16 16 13 C 0.09 2.31 5.17 86.73 0.45 2.76 16 14 N -0.61 -20.74 3.33 -816.60 -2.72 -23.45 16 15 C 0.59 21.61 7.82 86.42 0.68 22.29 16 16 O -0.59 -26.32 17.09 -4.36 -0.07 -26.39 16 17 C -0.30 -8.44 6.36 23.95 0.15 -8.28 16 18 C -0.05 -1.36 9.80 21.79 0.21 -1.15 16 19 C -0.13 -2.60 5.75 -20.02 -0.12 -2.71 16 20 C -0.20 -3.38 6.15 25.32 0.16 -3.22 16 21 S 0.26 4.76 18.36 -56.49 -1.04 3.73 16 22 C -0.05 -0.51 6.22 30.21 0.19 -0.32 16 23 C -0.11 -0.91 5.93 30.68 0.18 -0.73 16 24 C -0.12 -1.09 5.89 30.63 0.18 -0.91 16 25 C -0.06 -0.78 6.13 30.36 0.19 -0.60 16 26 C 0.10 3.86 6.60 86.85 0.57 4.44 16 27 H 0.25 15.01 6.77 -92.71 -0.63 14.38 16 28 H 0.37 18.36 6.54 -92.71 -0.61 17.75 16 29 H 0.08 2.26 8.00 -2.39 -0.02 2.24 16 30 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.10 1.94 6.83 -2.39 -0.02 1.92 16 32 H 0.09 1.93 6.99 -2.39 -0.02 1.91 16 33 H 0.14 3.68 8.05 -2.91 -0.02 3.66 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.58 8.10 -2.39 -0.02 0.56 16 37 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.63 8.10 -2.39 -0.02 0.61 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 43 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -74.69 355.05 1.93 -72.76 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.56 Total: 24.16 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 4.53 Total: -7.91 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -4.09 Total: -120.61 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.07 Total: -26.39 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.05 Total: 54.26 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.04 Total: 3.73 kcal Total: -74.69 1.93 -72.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970642228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.672 kcal (2) G-P(sol) polarization free energy of solvation -74.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds