Wall clock time and date at job start Tue Mar 31 2020 13:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99685 * 2 1 4 4 H 1.48504 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47433 * 299.99557 * 3 2 1 6 6 H 1.48500 * 109.47201 * 60.00048 * 3 2 1 7 7 C 1.38809 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99506 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00066 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99680 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.78129 * 323.21218 * 10 9 7 12 12 C 1.55155 * 110.71610 * 199.97668 * 10 9 7 13 13 C 1.55136 * 101.48547 * 205.96942 * 12 10 9 14 14 N 1.47424 * 104.71736 * 37.29670 * 13 12 10 15 15 C 1.34775 * 125.64453 * 155.81859 * 14 13 12 16 16 O 1.21641 * 120.00099 * 184.95252 * 15 14 13 17 17 C 1.47191 * 120.00044 * 5.22330 * 15 14 13 18 18 C 1.35620 * 123.18801 * 24.91421 * 17 15 14 19 19 S 1.70272 * 110.84396 * 179.97438 * 18 17 15 20 20 C 1.75596 * 92.62455 * 359.97438 * 19 18 17 21 21 C 1.34007 * 110.59710 * 359.73903 * 20 19 18 22 22 C 1.52020 * 123.45461 * 179.67395 * 21 20 19 23 23 C 1.53049 * 108.82354 * 343.38275 * 22 21 20 24 24 C 1.53156 * 109.20735 * 50.43160 * 23 22 21 25 25 C 1.51605 * 125.04533 * 180.02562 * 20 19 18 26 26 C 1.47021 * 108.70684 * 335.55438 * 14 13 12 27 27 H 0.97003 * 120.00406 * 0.02562 * 1 2 3 28 28 H 0.96994 * 120.00055 * 359.97438 * 9 7 2 29 29 H 1.09000 * 111.01226 * 324.21121 * 12 10 9 30 30 H 1.09005 * 111.00407 * 88.06101 * 12 10 9 31 31 H 1.09005 * 110.49597 * 278.45534 * 13 12 10 32 32 H 1.09004 * 110.34106 * 156.06125 * 13 12 10 33 33 H 1.08005 * 124.58184 * 359.97438 * 18 17 15 34 34 H 1.09009 * 109.73752 * 223.47640 * 22 21 20 35 35 H 1.08993 * 109.50182 * 103.15015 * 22 21 20 36 36 H 1.09008 * 109.51109 * 290.51345 * 23 22 21 37 37 H 1.08995 * 109.51562 * 170.35470 * 23 22 21 38 38 H 1.08997 * 109.54458 * 169.75149 * 24 23 22 39 39 H 1.09005 * 109.60913 * 49.53242 * 24 23 22 40 40 H 1.09004 * 109.59492 * 283.14767 * 25 20 19 41 41 H 1.08997 * 109.59875 * 43.60724 * 25 20 19 42 42 H 1.08994 * 109.88206 * 120.70732 * 26 14 13 43 43 H 1.09000 * 109.88247 * 241.71683 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9583 -3.5836 -0.6097 12 6 1.1514 -4.8141 -0.4953 13 6 1.8067 -6.0381 0.1969 14 7 2.2230 -5.5412 1.5210 15 6 2.4085 -6.2976 2.6209 16 8 2.6661 -5.7693 3.6859 17 6 2.3054 -7.7632 2.5323 18 6 2.5153 -8.4541 1.3844 19 16 2.3154 -10.1259 1.6382 20 6 1.9377 -9.9044 3.3387 21 6 1.9769 -8.6053 3.6650 22 6 1.6890 -8.0834 5.0635 23 6 0.9718 -9.1757 5.8603 24 6 1.7567 -10.4853 5.7394 25 6 1.6173 -11.0217 4.3120 26 6 2.4083 -4.0849 1.4412 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 0.1233 -4.6759 -0.1607 30 1 1.1980 -4.9096 -1.5801 31 1 2.6731 -6.3786 -0.3702 32 1 1.0820 -6.8451 0.3051 33 1 2.7744 -8.0047 0.4370 34 1 1.0547 -7.1989 5.0030 35 1 2.6268 -7.8275 5.5565 36 1 -0.0335 -9.3157 5.4628 37 1 0.9122 -8.8823 6.9083 38 1 1.3586 -11.2154 6.4439 39 1 2.8087 -10.3028 5.9588 40 1 0.5961 -11.3666 4.1494 41 1 2.3127 -11.8476 4.1623 42 1 1.7440 -3.5875 2.1477 43 1 3.4444 -3.8303 1.6645 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970661371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:57 Heat of formation + Delta-G solvation = -18.793177 kcal Electronic energy + Delta-G solvation = -24424.552838 eV Core-core repulsion = 20981.000572 eV Total energy + Delta-G solvation = -3443.552266 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40156 -39.69844 -38.49980 -36.24828 -35.71657 -33.34987 -31.72967 -31.17630 -30.42946 -28.85101 -26.60047 -25.31853 -24.34388 -23.77236 -22.49199 -21.59428 -20.40936 -19.29877 -19.24957 -18.20072 -17.86020 -17.47222 -16.56810 -16.30151 -15.71204 -15.47816 -15.42432 -15.23275 -15.00968 -14.74095 -14.46634 -14.30442 -13.99213 -13.79250 -13.61747 -13.47563 -13.31810 -13.01267 -12.92632 -12.57745 -12.50403 -12.38026 -12.34305 -12.10614 -11.78173 -11.75237 -11.63223 -11.60665 -11.27921 -11.09301 -10.92244 -9.78050 -9.57102 -9.20627 -9.12949 -7.99706 -5.30133 -0.20476 0.58496 0.89145 0.96966 1.45343 1.46997 1.56352 1.89387 2.19437 2.53247 3.30961 3.53413 3.57895 3.64828 3.86137 3.87572 3.99841 4.05587 4.08731 4.22860 4.28476 4.30315 4.36532 4.48343 4.57806 4.58632 4.62942 4.69931 4.83708 4.84980 4.94238 4.96407 4.98635 5.08235 5.13403 5.17242 5.23747 5.32491 5.34681 5.42902 5.49471 5.56797 6.21995 6.47785 7.06245 7.28859 8.00292 8.23683 9.23447 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.002783 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.409682 B =10059.386249 C =10746.756995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.297 1.297 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.726 5.726 10 C 0.167 3.833 11 H 0.076 0.924 12 C -0.129 4.129 13 C 0.102 3.898 14 N -0.608 5.608 15 C 0.576 3.424 16 O -0.586 6.586 17 C -0.170 4.170 18 C -0.217 4.217 19 S 0.249 5.751 20 C -0.208 4.208 21 C -0.085 4.085 22 C -0.051 4.051 23 C -0.117 4.117 24 C -0.113 4.113 25 C -0.045 4.045 26 C 0.095 3.905 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.194 0.806 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.032 0.968 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 -29.639 3.164 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.225 1.225 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.364 5.364 10 C 0.057 3.943 11 H 0.094 0.906 12 C -0.168 4.168 13 C -0.020 4.020 14 N -0.341 5.341 15 C 0.365 3.635 16 O -0.468 6.468 17 C -0.188 4.188 18 C -0.355 4.355 19 S 0.518 5.482 20 C -0.325 4.325 21 C -0.096 4.096 22 C -0.090 4.090 23 C -0.154 4.154 24 C -0.152 4.152 25 C -0.084 4.084 26 C -0.031 4.031 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.211 0.789 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.051 0.949 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.840 -30.541 2.752 30.904 hybrid contribution -0.075 3.370 1.129 3.555 sum 3.765 -27.170 3.882 27.703 Atomic orbital electron populations 1.69814 1.06600 1.26137 1.59146 1.25569 0.96376 1.01145 1.03363 0.85105 0.78328 0.79869 0.76642 1.18997 1.21596 1.22451 1.19668 0.91544 0.85089 1.41439 0.90412 1.42536 1.05502 1.00638 1.87764 1.21419 0.95798 0.85778 0.91336 0.90621 1.23069 0.98751 0.92841 1.02115 1.22824 1.00174 0.97337 0.81629 1.48464 1.66585 1.08054 1.10997 1.17984 0.76467 0.86804 0.82215 1.90740 1.51482 1.75199 1.29400 1.19945 1.11819 0.92137 0.94886 1.26067 1.05564 1.01297 1.02549 1.82563 1.63941 0.99897 1.01757 1.25100 1.09865 0.97710 0.99799 1.20426 1.02027 0.91772 0.95349 1.20362 1.00254 0.97894 0.90538 1.21604 0.99178 0.94628 1.00035 1.21583 1.00649 0.96740 0.96189 1.20481 1.03337 0.93323 0.91210 1.22828 0.99385 0.79509 1.01373 0.93913 0.79142 0.91662 0.87085 0.88025 0.88454 0.78888 0.93384 0.91893 0.91398 0.90543 0.88617 0.92107 0.88636 0.88393 0.94949 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 7 C -0.25 -13.57 9.98 84.03 0.84 -12.73 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.73 -36.12 5.18 -317.33 -1.64 -37.76 16 10 C 0.17 6.37 3.59 46.18 0.17 6.54 16 11 H 0.08 2.76 8.12 -2.39 -0.02 2.74 16 12 C -0.13 -3.65 6.71 32.07 0.22 -3.43 16 13 C 0.10 2.38 5.10 86.93 0.44 2.83 16 14 N -0.61 -20.40 3.32 -815.46 -2.71 -23.11 16 15 C 0.58 20.87 7.64 86.60 0.66 21.53 16 16 O -0.59 -26.21 15.76 -4.16 -0.07 -26.28 16 17 C -0.17 -4.72 5.72 -19.82 -0.11 -4.83 16 18 C -0.22 -4.22 8.96 67.21 0.60 -3.62 16 19 S 0.25 3.49 22.99 -56.49 -1.30 2.19 16 20 C -0.21 -3.77 6.32 25.01 0.16 -3.61 16 21 C -0.09 -2.17 5.93 -18.70 -0.11 -2.29 16 22 C -0.05 -1.35 4.95 30.29 0.15 -1.20 16 23 C -0.12 -2.06 5.91 30.66 0.18 -1.88 16 24 C -0.11 -1.43 5.93 30.69 0.18 -1.25 16 25 C -0.04 -0.52 6.26 30.18 0.19 -0.33 16 26 C 0.10 3.85 6.62 86.73 0.57 4.42 16 27 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.38 20.12 7.71 -92.71 -0.72 19.41 16 29 H 0.06 2.03 8.00 -2.39 -0.02 2.01 16 30 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.10 1.73 7.08 -2.38 -0.02 1.71 16 32 H 0.10 1.90 6.86 -2.38 -0.02 1.88 16 33 H 0.19 2.90 5.31 -2.91 -0.02 2.88 16 34 H 0.05 1.53 7.71 -2.38 -0.02 1.51 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.15 8.10 -2.38 -0.02 1.13 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.87 8.11 -2.38 -0.02 0.85 16 40 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.03 1.56 8.03 -2.39 -0.02 1.54 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -74.60 354.47 1.51 -73.09 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.31 Total: 25.84 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 4.60 Total: -3.52 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -4.07 Total: -119.80 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.07 Total: -26.28 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.30 Total: 2.19 kcal Total: -74.60 1.51 -73.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970661371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.297 kcal (2) G-P(sol) polarization free energy of solvation -74.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds