Wall clock time and date at job start Tue Mar 31 2020 13:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47512 * 5.28213 * 3 2 1 5 5 H 1.48508 * 109.47127 * 125.28124 * 3 2 1 6 6 H 1.48495 * 109.47289 * 245.27790 * 3 2 1 7 7 C 1.38813 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00116 * 345.68521 * 7 2 1 9 9 N 1.36935 * 119.99633 * 165.68026 * 7 2 1 10 10 C 1.47020 * 125.64918 * 348.93623 * 9 7 2 11 11 C 1.54334 * 107.26790 * 181.02250 * 10 9 7 12 12 C 1.55154 * 102.94217 * 22.19151 * 11 10 9 13 13 H 1.09003 * 111.00101 * 82.61306 * 12 11 10 14 14 N 1.46501 * 111.00325 * 206.41962 * 12 11 10 15 15 C 1.34771 * 120.00244 * 205.00052 * 14 12 11 16 16 O 1.21703 * 119.99884 * 0.02562 * 15 14 12 17 17 C 1.46576 * 120.00090 * 180.02562 * 15 14 12 18 18 C 1.36121 * 125.45822 * 179.72151 * 17 15 14 19 19 C 1.38279 * 114.09982 * 179.85735 * 18 17 15 20 20 C 1.35238 * 113.92968 * 0.41933 * 19 18 17 21 21 S 1.70758 * 111.10576 * 359.77679 * 20 19 18 22 22 C 1.51703 * 124.33630 * 179.79640 * 20 19 18 23 23 C 1.53113 * 108.74570 * 343.39660 * 22 20 19 24 24 C 1.53145 * 108.97713 * 50.10890 * 23 22 20 25 25 C 1.52334 * 123.07113 * 180.16218 * 19 18 17 26 26 C 1.47431 * 125.64442 * 168.63009 * 9 7 2 27 27 H 0.97003 * 119.99939 * 174.92863 * 1 2 3 28 28 H 1.09000 * 109.88648 * 300.43561 * 10 9 7 29 29 H 1.08994 * 109.88344 * 61.45505 * 10 9 7 30 30 H 1.09000 * 110.71694 * 140.55842 * 11 10 9 31 31 H 1.09001 * 110.71400 * 263.65148 * 11 10 9 32 32 H 0.97002 * 119.99662 * 25.00694 * 14 12 11 33 33 H 1.08001 * 122.94908 * 0.02562 * 18 17 15 34 34 H 1.09003 * 109.59006 * 103.23319 * 22 20 19 35 35 H 1.08996 * 109.59088 * 223.66947 * 22 20 19 36 36 H 1.08994 * 109.57219 * 290.24801 * 23 22 20 37 37 H 1.09000 * 109.53916 * 169.95081 * 23 22 20 38 38 H 1.09009 * 109.50519 * 169.21338 * 24 23 22 39 39 H 1.09001 * 109.55526 * 49.09134 * 24 23 22 40 40 H 1.08992 * 109.58349 * 282.68517 * 25 19 18 41 41 H 1.09000 * 109.58189 * 42.96850 * 25 19 18 42 42 H 1.08998 * 110.35883 * 274.74557 * 26 9 7 43 43 H 1.09000 * 110.36735 * 37.06529 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2903 2.7435 0.1289 5 1 3.1980 1.6421 1.1430 6 1 3.0047 1.7537 -1.2717 7 6 2.0102 -1.2022 0.0005 8 1 1.4954 -2.1228 0.2322 9 7 3.3477 -1.2206 -0.2928 10 6 4.1196 -0.0973 -0.8439 11 6 5.5709 -0.5875 -1.0323 12 6 5.4101 -2.1288 -1.1076 13 1 5.1307 -2.4438 -2.1130 14 7 6.6327 -2.8064 -0.6689 15 6 6.9078 -4.0508 -1.1071 16 8 6.1407 -4.6116 -1.8676 17 6 8.1308 -4.7289 -0.6677 18 6 8.5141 -5.9823 -1.0350 19 6 9.7145 -6.3901 -0.4827 20 6 10.2848 -5.4715 0.3296 21 16 9.3324 -4.0573 0.4226 22 6 11.5987 -5.6738 1.0604 23 6 11.9329 -7.1680 1.0674 24 6 11.8119 -7.7121 -0.3590 25 6 10.3360 -7.7532 -0.7589 26 6 4.2533 -2.3683 -0.1022 27 1 -0.4850 -0.8368 -0.0743 28 1 3.7023 0.2032 -1.8050 29 1 4.0970 0.7435 -0.1508 30 1 5.9923 -0.1979 -1.9590 31 1 6.1877 -0.3025 -0.1800 32 1 7.2442 -2.3593 -0.0630 33 1 7.9332 -6.6027 -1.7014 34 1 12.3893 -5.1239 0.5498 35 1 11.5054 -5.3161 2.0858 36 1 11.2361 -7.6950 1.7192 37 1 12.9515 -7.3121 1.4276 38 1 12.2287 -8.7184 -0.4013 39 1 12.3570 -7.0632 -1.0445 40 1 9.8203 -8.5151 -0.1745 41 1 10.2495 -7.9859 -1.8203 42 1 4.6330 -2.3862 0.9193 43 1 3.7378 -3.3007 -0.3326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016174669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:55 Heat of formation + Delta-G solvation = 14.440970 kcal Electronic energy + Delta-G solvation = -23945.027308 eV Core-core repulsion = 20502.916182 eV Total energy + Delta-G solvation = -3442.111126 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00459 -39.28647 -37.61503 -35.27094 -34.24033 -32.20002 -31.33283 -29.94653 -29.22455 -27.88407 -24.86799 -24.15578 -23.60526 -21.87755 -21.04048 -20.43940 -20.18821 -18.76699 -18.08131 -17.46563 -16.35744 -16.23889 -15.47607 -15.23388 -15.12153 -14.69635 -14.53287 -14.29432 -13.76758 -13.56404 -13.37446 -13.13771 -12.99737 -12.82865 -12.76133 -12.55988 -12.18231 -11.79919 -11.55234 -11.44965 -11.32198 -11.10054 -11.08765 -11.06482 -10.78998 -10.67072 -10.13877 -9.96578 -9.31860 -9.08069 -8.97368 -8.85301 -8.67786 -8.58424 -7.03301 -6.29283 -3.21188 0.30510 1.19993 1.64024 2.10582 3.09008 3.17849 3.41594 3.49179 3.72275 4.18615 4.35248 4.42722 4.61944 4.63674 4.73282 4.79192 4.93364 5.02761 5.07869 5.12798 5.20031 5.31288 5.31444 5.37858 5.38412 5.48695 5.52231 5.55947 5.63326 5.73679 5.84010 5.85453 5.88350 6.02247 6.07897 6.18882 6.32054 6.36989 6.54939 6.71778 6.75565 7.47926 7.67761 8.17161 8.35470 9.06107 9.56271 10.22786 11.21451 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.033946 B = 0.002544 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.629454 B =11003.651930 C =11364.409337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.023 4.023 3 Si 1.072 2.928 4 H -0.301 1.301 5 H -0.298 1.298 6 H -0.286 1.286 7 C -0.320 4.320 8 H 0.079 0.921 9 N -0.611 5.611 10 C 0.112 3.888 11 C -0.135 4.135 12 C 0.129 3.871 13 H 0.104 0.896 14 N -0.713 5.713 15 C 0.589 3.411 16 O -0.526 6.526 17 C -0.259 4.259 18 C -0.052 4.052 19 C -0.118 4.118 20 C -0.198 4.198 21 S 0.193 5.807 22 C -0.049 4.049 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.057 4.057 26 C 0.129 3.871 27 H 0.262 0.738 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.395 0.605 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.026 0.974 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.486 -12.390 0.935 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.222 4.222 3 Si 0.907 3.093 4 H -0.230 1.230 5 H -0.227 1.227 6 H -0.213 1.213 7 C -0.447 4.447 8 H 0.096 0.904 9 N -0.339 5.339 10 C -0.013 4.013 11 C -0.174 4.174 12 C 0.024 3.976 13 H 0.122 0.878 14 N -0.363 5.363 15 C 0.375 3.625 16 O -0.404 6.404 17 C -0.379 4.379 18 C -0.085 4.085 19 C -0.130 4.130 20 C -0.317 4.317 21 S 0.464 5.536 22 C -0.088 4.088 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.096 4.096 26 C 0.001 3.999 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.229 0.771 33 H 0.169 0.831 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.043 0.957 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 28.724 -9.715 1.241 30.348 hybrid contribution 0.330 -2.798 -0.390 2.844 sum 29.054 -12.514 0.851 31.645 Atomic orbital electron populations 1.70885 1.05665 1.29275 1.51161 1.25881 0.96526 1.00921 0.98896 0.83810 0.73138 0.76184 0.76202 1.22969 1.22734 1.21330 1.20194 0.81490 0.96164 1.46895 0.90355 1.44739 1.05790 1.08486 1.74865 1.21986 0.89565 0.92073 0.97673 1.22867 0.98295 0.94191 1.02001 1.22387 0.83604 0.91518 1.00120 0.87766 1.45820 1.24935 1.15974 1.49596 1.16929 0.83818 0.81196 0.80561 1.90852 1.48775 1.65199 1.35555 1.24334 1.02223 1.01069 1.10300 1.20609 0.95092 0.94011 0.98741 1.19498 0.95572 0.97992 0.99978 1.24612 1.02962 0.99125 1.05022 1.82897 1.12141 1.15654 1.42948 1.20392 0.91338 0.97861 0.99239 1.21566 1.01852 0.94530 0.97494 1.21550 0.96093 1.01439 0.96690 1.20542 0.95008 0.92147 1.01868 1.21904 0.90214 0.92450 0.95296 0.92828 0.93197 0.95056 0.90533 0.91042 0.77064 0.83123 0.89985 0.90250 0.91312 0.91043 0.91248 0.91561 0.90456 0.90425 0.95671 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.75 13.70 55.49 0.76 -28.99 16 2 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 3 Si 1.07 27.05 24.53 -169.99 -4.17 22.88 16 4 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.30 -7.22 6.84 56.52 0.39 -6.83 16 6 H -0.29 -6.53 5.43 56.52 0.31 -6.22 16 7 C -0.32 -9.46 10.56 -15.06 -0.16 -9.62 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 N -0.61 -15.43 3.32 -169.93 -0.56 -15.99 16 10 C 0.11 2.44 4.62 -3.06 -0.01 2.43 16 11 C -0.14 -2.20 6.59 -24.89 -0.16 -2.36 16 12 C 0.13 2.25 3.44 -65.67 -0.23 2.02 16 13 H 0.10 1.98 7.54 -51.93 -0.39 1.59 16 14 N -0.71 -10.33 5.19 -52.95 -0.27 -10.60 16 15 C 0.59 9.22 7.78 -12.90 -0.10 9.12 16 16 O -0.53 -10.20 16.47 5.19 0.09 -10.12 16 17 C -0.26 -3.27 6.43 -36.98 -0.24 -3.50 16 18 C -0.05 -0.60 9.80 -40.33 -0.40 -0.99 16 19 C -0.12 -1.11 5.75 -104.86 -0.60 -1.72 16 20 C -0.20 -1.73 6.15 -34.88 -0.21 -1.95 16 21 S 0.19 1.81 22.09 -107.50 -2.37 -0.56 16 22 C -0.05 -0.30 6.22 -27.33 -0.17 -0.47 16 23 C -0.12 -0.60 5.93 -26.60 -0.16 -0.76 16 24 C -0.12 -0.65 5.89 -26.67 -0.16 -0.81 16 25 C -0.06 -0.39 6.13 -27.09 -0.17 -0.56 16 26 C 0.13 2.75 6.93 -2.41 -0.02 2.73 16 27 H 0.26 8.32 8.73 -40.82 -0.36 7.96 16 28 H 0.05 1.13 6.78 -51.93 -0.35 0.78 16 29 H 0.03 0.72 3.81 -51.93 -0.20 0.52 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.01 8.01 -51.93 -0.42 0.59 16 32 H 0.40 4.63 7.68 -40.82 -0.31 4.32 16 33 H 0.15 1.74 8.05 -52.49 -0.42 1.31 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 39 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -34.82 350.54 -10.56 -45.38 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.42 Total: -0.05 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.88 Total: -7.23 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.08 Total: -55.58 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 27.05 SS G_CDS: -4.17 Total: 22.88 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.37 Total: -0.56 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.82 -10.56 -45.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016174669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.822 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds