Wall clock time and date at job start Tue Mar 31 2020 13:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47512 * 5.28213 * 3 2 1 5 5 H 1.48508 * 109.47127 * 125.28124 * 3 2 1 6 6 H 1.48495 * 109.47289 * 245.27790 * 3 2 1 7 7 C 1.38813 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00116 * 345.68521 * 7 2 1 9 9 N 1.36935 * 119.99633 * 165.68026 * 7 2 1 10 10 C 1.47020 * 125.64918 * 348.93623 * 9 7 2 11 11 C 1.54334 * 107.26790 * 181.02250 * 10 9 7 12 12 C 1.55154 * 102.94217 * 22.19151 * 11 10 9 13 13 H 1.09003 * 111.00101 * 82.61306 * 12 11 10 14 14 N 1.46501 * 111.00325 * 206.41962 * 12 11 10 15 15 C 1.34771 * 120.00244 * 205.00052 * 14 12 11 16 16 O 1.21703 * 119.99884 * 0.02562 * 15 14 12 17 17 C 1.46576 * 120.00090 * 180.02562 * 15 14 12 18 18 C 1.36121 * 125.45822 * 179.72151 * 17 15 14 19 19 C 1.38279 * 114.09982 * 179.85735 * 18 17 15 20 20 C 1.35238 * 113.92968 * 0.41933 * 19 18 17 21 21 S 1.70758 * 111.10576 * 359.77679 * 20 19 18 22 22 C 1.51703 * 124.33630 * 179.79640 * 20 19 18 23 23 C 1.53113 * 108.74570 * 343.39660 * 22 20 19 24 24 C 1.53145 * 108.97713 * 50.10890 * 23 22 20 25 25 C 1.52334 * 123.07113 * 180.16218 * 19 18 17 26 26 C 1.47431 * 125.64442 * 168.63009 * 9 7 2 27 27 H 0.97003 * 119.99939 * 174.92863 * 1 2 3 28 28 H 1.09000 * 109.88648 * 300.43561 * 10 9 7 29 29 H 1.08994 * 109.88344 * 61.45505 * 10 9 7 30 30 H 1.09000 * 110.71694 * 140.55842 * 11 10 9 31 31 H 1.09001 * 110.71400 * 263.65148 * 11 10 9 32 32 H 0.97002 * 119.99662 * 25.00694 * 14 12 11 33 33 H 1.08001 * 122.94908 * 0.02562 * 18 17 15 34 34 H 1.09003 * 109.59006 * 103.23319 * 22 20 19 35 35 H 1.08996 * 109.59088 * 223.66947 * 22 20 19 36 36 H 1.08994 * 109.57219 * 290.24801 * 23 22 20 37 37 H 1.09000 * 109.53916 * 169.95081 * 23 22 20 38 38 H 1.09009 * 109.50519 * 169.21338 * 24 23 22 39 39 H 1.09001 * 109.55526 * 49.09134 * 24 23 22 40 40 H 1.08992 * 109.58349 * 282.68517 * 25 19 18 41 41 H 1.09000 * 109.58189 * 42.96850 * 25 19 18 42 42 H 1.08998 * 110.35883 * 274.74557 * 26 9 7 43 43 H 1.09000 * 110.36735 * 37.06529 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2903 2.7435 0.1289 5 1 3.1980 1.6421 1.1430 6 1 3.0047 1.7537 -1.2717 7 6 2.0102 -1.2022 0.0005 8 1 1.4954 -2.1228 0.2322 9 7 3.3477 -1.2206 -0.2928 10 6 4.1196 -0.0973 -0.8439 11 6 5.5709 -0.5875 -1.0323 12 6 5.4101 -2.1288 -1.1076 13 1 5.1307 -2.4438 -2.1130 14 7 6.6327 -2.8064 -0.6689 15 6 6.9078 -4.0508 -1.1071 16 8 6.1407 -4.6116 -1.8676 17 6 8.1308 -4.7289 -0.6677 18 6 8.5141 -5.9823 -1.0350 19 6 9.7145 -6.3901 -0.4827 20 6 10.2848 -5.4715 0.3296 21 16 9.3324 -4.0573 0.4226 22 6 11.5987 -5.6738 1.0604 23 6 11.9329 -7.1680 1.0674 24 6 11.8119 -7.7121 -0.3590 25 6 10.3360 -7.7532 -0.7589 26 6 4.2533 -2.3683 -0.1022 27 1 -0.4850 -0.8368 -0.0743 28 1 3.7023 0.2032 -1.8050 29 1 4.0970 0.7435 -0.1508 30 1 5.9923 -0.1979 -1.9590 31 1 6.1877 -0.3025 -0.1800 32 1 7.2442 -2.3593 -0.0630 33 1 7.9332 -6.6027 -1.7014 34 1 12.3893 -5.1239 0.5498 35 1 11.5054 -5.3161 2.0858 36 1 11.2361 -7.6950 1.7192 37 1 12.9515 -7.3121 1.4276 38 1 12.2287 -8.7184 -0.4013 39 1 12.3570 -7.0632 -1.0445 40 1 9.8203 -8.5151 -0.1745 41 1 10.2495 -7.9859 -1.8203 42 1 4.6330 -2.3862 0.9193 43 1 3.7378 -3.3007 -0.3326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016174669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:55 Heat of formation + Delta-G solvation = -9.189318 kcal Electronic energy + Delta-G solvation = -23946.051994 eV Core-core repulsion = 20502.916182 eV Total energy + Delta-G solvation = -3443.135812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18145 -40.11487 -39.16775 -35.98795 -35.80040 -34.21918 -31.84688 -31.47672 -30.46480 -29.33003 -26.27059 -25.09715 -24.64363 -22.82436 -22.66597 -21.81100 -21.33141 -19.85042 -19.39663 -18.89290 -17.68675 -17.28780 -16.95504 -16.29821 -16.19648 -15.84966 -15.53703 -15.44576 -15.18350 -14.73086 -14.43708 -14.32871 -14.06723 -13.97625 -13.75087 -13.64650 -13.47682 -13.24960 -13.09257 -12.60929 -12.38778 -12.36406 -12.19350 -11.80622 -11.72890 -11.53068 -11.44448 -11.33490 -11.29483 -11.08066 -10.74809 -10.34710 -9.65414 -9.32996 -9.15120 -8.70665 -5.53981 -0.55966 0.41024 0.86052 1.25238 1.40443 1.51535 1.73023 1.89102 2.05819 2.55612 3.08945 3.26772 3.47585 3.62780 3.72803 3.78145 3.92158 4.02121 4.02966 4.11732 4.25407 4.26103 4.41472 4.42836 4.62002 4.64719 4.65371 4.75082 4.78376 4.81781 4.85644 4.90829 5.01480 5.03815 5.10617 5.12797 5.23331 5.30901 5.36966 5.46567 5.49407 5.51229 6.04055 6.32402 6.77072 6.99723 7.36278 8.01834 8.81874 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.033946 B = 0.002544 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.629454 B =11003.651930 C =11364.409337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.081 4.081 3 Si 1.115 2.885 4 H -0.312 1.312 5 H -0.277 1.277 6 H -0.244 1.244 7 C -0.318 4.318 8 H 0.037 0.963 9 N -0.632 5.632 10 C 0.098 3.902 11 C -0.116 4.116 12 C 0.144 3.856 13 H 0.086 0.914 14 N -0.699 5.699 15 C 0.589 3.411 16 O -0.576 6.576 17 C -0.299 4.299 18 C -0.053 4.053 19 C -0.133 4.133 20 C -0.188 4.188 21 S 0.240 5.760 22 C -0.053 4.053 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.058 4.058 26 C 0.126 3.874 27 H 0.245 0.755 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.413 0.587 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.558 -11.309 1.660 36.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.273 4.273 3 Si 0.940 3.060 4 H -0.241 1.241 5 H -0.204 1.204 6 H -0.169 1.169 7 C -0.446 4.446 8 H 0.055 0.945 9 N -0.360 5.360 10 C -0.026 4.026 11 C -0.154 4.154 12 C 0.038 3.962 13 H 0.104 0.896 14 N -0.350 5.350 15 C 0.377 3.623 16 O -0.457 6.457 17 C -0.419 4.419 18 C -0.088 4.088 19 C -0.145 4.145 20 C -0.308 4.308 21 S 0.511 5.489 22 C -0.092 4.092 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.097 4.097 26 C -0.001 4.001 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.250 0.750 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 33.872 -8.654 1.979 35.016 hybrid contribution -1.215 -3.325 -0.559 3.584 sum 32.657 -11.979 1.420 34.813 Atomic orbital electron populations 1.71005 1.07045 1.28354 1.54125 1.27406 0.96494 1.04918 0.98517 0.83372 0.72600 0.71125 0.78857 1.24122 1.20387 1.16884 1.20044 0.83947 0.94731 1.45909 0.94499 1.44765 1.04979 1.11000 1.75260 1.22223 0.92330 0.91211 0.96837 1.22859 0.95190 0.91982 1.05404 1.21950 0.83308 0.93185 0.97762 0.89611 1.45570 1.24029 1.15708 1.49715 1.17361 0.84262 0.81070 0.79617 1.90821 1.50737 1.66308 1.37856 1.24086 1.02669 1.01950 1.13201 1.20758 0.95822 0.93750 0.98425 1.19685 0.95020 0.99465 1.00356 1.25139 1.03550 0.98395 1.03722 1.82618 1.10247 1.15175 1.40900 1.20604 0.89974 0.98893 0.99683 1.21594 1.02916 0.93674 0.97172 1.21559 0.94686 1.02424 0.96880 1.20625 0.96154 0.90770 1.02151 1.22004 0.90960 0.90058 0.97082 0.94582 0.94063 0.94491 0.86986 0.87605 0.75010 0.84313 0.88403 0.88944 0.91805 0.89037 0.89801 0.91545 0.90238 0.90280 0.94553 0.96298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.01 13.70 21.65 0.30 -63.71 16 2 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 3 Si 1.11 53.63 24.53 68.60 1.68 55.31 16 4 H -0.31 -15.48 7.11 99.48 0.71 -14.78 16 5 H -0.28 -12.26 6.84 99.48 0.68 -11.58 16 6 H -0.24 -10.10 5.43 99.48 0.54 -9.56 16 7 C -0.32 -19.50 10.56 84.03 0.89 -18.62 16 8 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 9 N -0.63 -32.04 3.32 -691.55 -2.30 -34.33 16 10 C 0.10 4.01 4.62 86.73 0.40 4.41 16 11 C -0.12 -3.30 6.59 31.79 0.21 -3.09 16 12 C 0.14 4.85 3.44 46.46 0.16 5.01 16 13 H 0.09 3.26 7.54 -2.39 -0.02 3.24 16 14 N -0.70 -19.10 5.19 -439.66 -2.28 -21.38 16 15 C 0.59 18.41 7.78 86.42 0.67 19.08 16 16 O -0.58 -23.28 16.47 -4.36 -0.07 -23.35 16 17 C -0.30 -7.34 6.43 23.95 0.15 -7.18 16 18 C -0.05 -1.23 9.80 21.79 0.21 -1.02 16 19 C -0.13 -2.33 5.75 -20.02 -0.12 -2.44 16 20 C -0.19 -2.78 6.15 25.31 0.16 -2.63 16 21 S 0.24 3.85 22.09 -56.49 -1.25 2.60 16 22 C -0.05 -0.44 6.22 30.21 0.19 -0.25 16 23 C -0.11 -0.79 5.93 30.68 0.18 -0.61 16 24 C -0.12 -0.94 5.89 30.63 0.18 -0.76 16 25 C -0.06 -0.71 6.13 30.36 0.19 -0.52 16 26 C 0.13 5.43 6.93 86.93 0.60 6.03 16 27 H 0.25 16.54 8.73 -92.71 -0.81 15.73 16 28 H 0.04 1.76 6.78 -2.39 -0.02 1.74 16 29 H 0.04 1.52 3.81 -2.39 -0.01 1.51 16 30 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.11 2.35 8.01 -2.39 -0.02 2.33 16 32 H 0.41 8.36 7.68 -92.71 -0.71 7.64 16 33 H 0.14 3.40 8.05 -2.91 -0.02 3.38 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.53 8.10 -2.39 -0.02 0.51 16 37 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.07 0.55 8.10 -2.39 -0.02 0.53 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -81.03 350.54 0.71 -80.32 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.08 Total: 11.69 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 4.54 Total: -7.14 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -4.28 Total: -119.42 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.07 Total: -23.35 kcal Atomic # 14 Polarization: 53.63 SS G_CDS: 1.68 Total: 55.31 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.25 Total: 2.60 kcal Total: -81.03 0.71 -80.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016174669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.133 kcal (2) G-P(sol) polarization free energy of solvation -81.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds