Wall clock time and date at job start Tue Mar 31 2020 13:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99892 * 2 1 4 4 H 1.48497 * 109.47125 * 269.99712 * 3 2 1 5 5 H 1.48496 * 109.47365 * 30.00078 * 3 2 1 6 6 H 1.48504 * 109.46846 * 150.00052 * 3 2 1 7 7 C 1.38808 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00163 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64112 * 0.05504 * 9 7 2 11 11 C 1.54918 * 104.82827 * 204.07745 * 10 9 7 12 12 C 1.55157 * 101.58155 * 322.99497 * 11 10 9 13 13 H 1.09004 * 110.71350 * 154.04091 * 12 11 10 14 14 N 1.46498 * 110.71751 * 277.13480 * 12 11 10 15 15 C 1.34783 * 119.99576 * 205.00331 * 14 12 11 16 16 O 1.21631 * 120.00425 * 359.97438 * 15 14 12 17 17 C 1.47195 * 119.99467 * 180.02562 * 15 14 12 18 18 C 1.35624 * 123.19057 * 359.70730 * 17 15 14 19 19 S 1.70270 * 110.84037 * 179.85922 * 18 17 15 20 20 C 1.75593 * 92.62537 * 0.35194 * 19 18 17 21 21 C 1.34001 * 110.60332 * 359.78856 * 20 19 18 22 22 C 1.52013 * 123.46571 * 180.02562 * 21 20 19 23 23 C 1.53042 * 108.75826 * 342.87274 * 22 21 20 24 24 C 1.53157 * 109.21208 * 50.63842 * 23 22 21 25 25 C 1.51606 * 125.04483 * 179.79483 * 20 19 18 26 26 C 1.47015 * 125.65004 * 179.97438 * 9 7 2 27 27 H 0.96999 * 120.00120 * 0.02562 * 1 2 3 28 28 H 1.08999 * 110.36633 * 85.25018 * 10 9 7 29 29 H 1.08996 * 110.37033 * 322.91399 * 10 9 7 30 30 H 1.09001 * 111.00522 * 204.91555 * 11 10 9 31 31 H 1.09000 * 110.99891 * 81.06585 * 11 10 9 32 32 H 0.96998 * 119.99852 * 25.00356 * 14 12 11 33 33 H 1.07999 * 124.57809 * 0.02562 * 18 17 15 34 34 H 1.09003 * 109.58584 * 102.66330 * 22 21 20 35 35 H 1.08990 * 109.59426 * 223.09653 * 22 21 20 36 36 H 1.09001 * 109.52197 * 290.71437 * 23 22 21 37 37 H 1.09005 * 109.51132 * 170.55723 * 23 22 21 38 38 H 1.08997 * 109.54633 * 169.75177 * 24 23 22 39 39 H 1.09010 * 109.54189 * 49.49664 * 24 23 22 40 40 H 1.09003 * 109.60114 * 283.10423 * 25 20 19 41 41 H 1.09000 * 109.60385 * 43.57021 * 25 20 19 42 42 H 1.09000 * 109.88350 * 59.57113 * 26 9 7 43 43 H 1.08998 * 109.88602 * 298.40779 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1415 -2.5331 0.0011 11 6 -0.4019 -3.9321 0.6136 12 6 0.7784 -4.7524 0.0294 13 1 1.0217 -5.5938 0.6783 14 7 0.4664 -5.2176 -1.3243 15 6 1.0738 -6.3156 -1.8162 16 8 1.8813 -6.9200 -1.1366 17 6 0.7607 -6.7826 -3.1766 18 6 -0.1315 -6.1618 -3.9877 19 16 -0.2469 -6.9621 -5.4862 20 6 0.9291 -8.1791 -5.0182 21 6 1.3720 -7.9530 -3.7738 22 6 2.3993 -8.8306 -3.0772 23 6 2.4880 -10.1670 -3.8178 24 6 2.6832 -9.9022 -5.3137 25 6 1.3866 -9.3295 -5.8932 26 6 1.9318 -3.7275 0.0017 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5269 -2.4874 -1.0175 29 1 -0.5995 -1.7585 0.6162 30 1 -1.3591 -4.3326 0.2800 31 1 -0.3526 -3.8973 1.7019 32 1 -0.1774 -4.7354 -1.8664 33 1 -0.6910 -5.2776 -3.7203 34 1 3.3716 -8.3383 -3.0935 35 1 2.0925 -9.0042 -2.0459 36 1 1.5674 -10.7301 -3.6648 37 1 3.3335 -10.7393 -3.4360 38 1 2.9281 -10.8356 -5.8203 39 1 3.4929 -9.1861 -5.4546 40 1 0.6200 -10.1043 -5.9089 41 1 1.5664 -8.9695 -6.9062 42 1 2.5583 -3.8507 0.8851 43 1 2.5282 -3.8646 -0.9002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016198320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:16 Heat of formation + Delta-G solvation = 6.246290 kcal Electronic energy + Delta-G solvation = -24571.208958 eV Core-core repulsion = 21128.742485 eV Total energy + Delta-G solvation = -3442.466474 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03873 -38.59703 -37.09334 -35.06990 -33.78754 -31.79600 -30.90507 -29.48766 -28.87723 -27.23227 -24.99507 -24.23348 -23.43744 -22.18753 -20.20231 -20.16606 -19.69984 -18.34176 -17.61495 -16.98585 -16.69992 -15.72023 -15.03042 -14.67391 -14.61615 -14.47166 -14.11817 -13.95888 -13.73064 -13.50792 -13.20169 -13.01896 -12.71942 -12.48304 -12.32613 -11.97757 -11.66763 -11.62538 -11.54181 -11.08615 -11.01211 -10.89427 -10.84813 -10.78011 -10.50072 -10.38359 -10.13030 -9.89683 -9.61090 -9.51641 -8.79277 -8.70021 -8.61475 -8.33782 -6.85213 -5.67598 -3.08495 0.72472 1.42056 1.84513 1.96290 3.39120 3.43607 3.45156 3.46554 3.55255 4.38746 4.48534 4.63611 4.69659 4.80200 5.00137 5.09286 5.17365 5.33146 5.38588 5.42060 5.43958 5.45456 5.49679 5.60633 5.73157 5.75568 5.77021 5.86371 5.90648 6.00715 6.13399 6.17881 6.26023 6.36197 6.47495 6.50589 6.57379 6.72846 7.05850 7.40355 7.61089 7.78603 7.84523 8.32928 8.48895 9.20565 9.81208 10.45636 11.36712 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.002979 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.156821 B = 9398.091450 C = 9712.975902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.154 4.154 12 C 0.132 3.868 13 H 0.091 0.909 14 N -0.704 5.704 15 C 0.574 3.426 16 O -0.540 6.540 17 C -0.143 4.143 18 C -0.212 4.212 19 S 0.174 5.826 20 C -0.213 4.213 21 C -0.050 4.050 22 C -0.053 4.053 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.042 4.042 26 C 0.127 3.873 27 H 0.252 0.748 28 H 0.009 0.991 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.398 0.602 33 H 0.171 0.829 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.736 -19.566 -11.287 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.193 4.193 12 C 0.027 3.973 13 H 0.109 0.891 14 N -0.355 5.355 15 C 0.359 3.641 16 O -0.419 6.419 17 C -0.161 4.161 18 C -0.350 4.350 19 S 0.444 5.556 20 C -0.329 4.329 21 C -0.061 4.061 22 C -0.092 4.092 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.081 4.081 26 C 0.000 4.000 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.233 0.767 33 H 0.188 0.812 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.050 0.950 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.077 -19.455 -12.096 23.003 hybrid contribution 0.816 1.233 0.947 1.756 sum -1.261 -18.223 -11.149 21.400 Atomic orbital electron populations 1.69780 1.04861 1.24741 1.57957 1.24770 0.95752 0.97688 1.02537 0.86059 0.78570 0.83272 0.77543 1.21692 1.21646 1.20675 1.19100 0.90563 0.82436 1.42692 0.90509 1.44518 1.01790 0.99781 1.86887 1.21949 0.84959 0.92505 0.97921 1.23354 0.95893 0.99093 1.00961 1.22017 0.96817 0.96445 0.82034 0.89061 1.45867 1.44530 1.27840 1.17227 1.17581 0.80861 0.80380 0.85229 1.90735 1.34272 1.56883 1.59988 1.20208 1.01204 0.98375 0.96267 1.25469 1.04127 1.05559 0.99813 1.82822 1.40129 1.19430 1.13239 1.24652 1.05510 1.03600 0.99179 1.20398 0.98300 0.94712 0.92682 1.20525 0.96644 0.92734 0.99314 1.21630 1.02100 0.97309 0.94898 1.21592 0.96927 1.00883 0.96161 1.20280 0.97655 0.93363 0.96813 1.21693 0.93892 0.85876 0.98517 0.93773 0.97323 0.87354 0.91780 0.90527 0.76721 0.81185 0.90256 0.89038 0.91771 0.91272 0.91242 0.91390 0.90413 0.90615 0.95007 0.95636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.70 16 9 N -0.60 -15.48 3.39 -170.07 -0.58 -16.06 16 10 C 0.15 3.55 5.85 -2.52 -0.01 3.54 16 11 C -0.15 -2.81 6.67 -24.58 -0.16 -2.98 16 12 C 0.13 2.42 3.33 -66.10 -0.22 2.20 16 13 H 0.09 1.65 7.55 -51.93 -0.39 1.26 16 14 N -0.70 -11.73 5.05 -53.17 -0.27 -12.00 16 15 C 0.57 9.72 7.79 -12.62 -0.10 9.62 16 16 O -0.54 -10.37 14.25 5.25 0.07 -10.29 16 17 C -0.14 -2.06 5.97 -104.55 -0.62 -2.68 16 18 C -0.21 -2.58 10.35 29.80 0.31 -2.27 16 19 S 0.17 1.76 22.99 -107.50 -2.47 -0.71 16 20 C -0.21 -2.33 6.32 -35.35 -0.22 -2.55 16 21 C -0.05 -0.65 5.95 -102.82 -0.61 -1.27 16 22 C -0.05 -0.65 5.07 -27.21 -0.14 -0.79 16 23 C -0.12 -1.09 5.90 -26.63 -0.16 -1.25 16 24 C -0.12 -0.91 5.93 -26.58 -0.16 -1.07 16 25 C -0.04 -0.34 6.26 -27.37 -0.17 -0.51 16 26 C 0.13 2.81 6.98 -3.07 -0.02 2.79 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.40 6.07 7.10 -40.82 -0.29 5.78 16 33 H 0.17 1.83 6.97 -52.49 -0.37 1.46 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.26 6.94 -51.93 -0.36 0.90 16 36 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.57 8.11 -51.92 -0.42 0.15 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -31.53 352.89 -11.26 -42.79 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.32 Total: 3.85 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.54 Total: -3.98 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.29 Total: -54.11 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.47 Total: -0.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.53 -11.26 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016198320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.033 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds