Wall clock time and date at job start Tue Mar 31 2020 13:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00371 * 2 1 4 4 H 1.48504 * 109.47239 * 264.67360 * 3 2 1 5 5 H 1.48504 * 109.46709 * 24.67178 * 3 2 1 6 6 H 1.48495 * 109.47274 * 144.67050 * 3 2 1 7 7 C 1.38818 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99831 * 336.23836 * 7 2 1 9 9 N 1.36937 * 119.99892 * 156.24071 * 7 2 1 10 10 C 1.47427 * 125.64276 * 162.04863 * 9 7 2 11 11 C 1.54910 * 104.82909 * 155.90704 * 10 9 7 12 12 C 1.55163 * 101.57982 * 37.00782 * 11 10 9 13 13 H 1.09003 * 110.71612 * 83.04282 * 12 11 10 14 14 C 1.53001 * 110.71873 * 206.13140 * 12 11 10 15 15 N 1.46503 * 109.47055 * 182.55948 * 14 12 11 16 16 C 1.34780 * 119.99912 * 179.97438 * 15 14 12 17 17 O 1.21701 * 119.99867 * 0.02562 * 16 15 14 18 18 C 1.46585 * 119.99764 * 180.02562 * 16 15 14 19 19 C 1.35869 * 125.41414 * 180.02562 * 18 16 15 20 20 C 1.39171 * 114.00009 * 179.97438 * 19 18 16 21 21 C 1.34371 * 113.99589 * 0.02562 * 20 19 18 22 22 S 1.71480 * 111.07671 * 359.97438 * 21 20 19 23 23 C 1.52369 * 110.38587 * 179.97438 * 21 20 19 24 24 C 1.54160 * 104.90405 * 342.46064 * 23 21 20 25 25 C 1.52812 * 136.19228 * 180.02562 * 20 19 18 26 26 C 1.47318 * 125.61739 * 342.27588 * 9 7 2 27 27 H 0.97005 * 119.99378 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.36905 * 37.07090 * 10 9 7 29 29 H 1.09001 * 110.46096 * 274.78636 * 10 9 7 30 30 H 1.09003 * 111.00570 * 278.93860 * 11 10 9 31 31 H 1.08998 * 111.03665 * 155.09595 * 11 10 9 32 32 H 1.09005 * 109.46793 * 62.56488 * 14 12 11 33 33 H 1.09000 * 109.47628 * 302.56032 * 14 12 11 34 34 H 0.96992 * 119.99806 * 0.02562 * 15 14 12 35 35 H 1.08000 * 123.00290 * 359.95365 * 19 18 16 36 36 H 1.09000 * 110.35640 * 223.59925 * 23 21 20 37 37 H 1.09006 * 110.44246 * 101.36051 * 23 21 20 38 38 H 1.09004 * 110.95851 * 268.59534 * 24 23 21 39 39 H 1.09001 * 110.99631 * 144.86107 * 24 23 21 40 40 H 1.09002 * 110.33110 * 316.51541 * 25 20 19 41 41 H 1.09005 * 110.32948 * 78.63196 * 25 20 19 42 42 H 1.08998 * 110.06486 * 61.67621 * 26 9 7 43 43 H 1.09001 * 109.84665 * 300.41577 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6104 1.9814 -1.3940 5 1 1.3960 2.6825 0.5844 6 1 3.4870 1.4752 0.8096 7 6 2.0103 -1.2022 -0.0005 8 1 1.5389 -2.0980 0.3759 9 7 3.2926 -1.2523 -0.4784 10 6 4.2677 -2.3251 -0.2110 11 6 5.2608 -2.2631 -1.3983 12 6 5.3570 -0.7342 -1.6444 13 1 6.0753 -0.2784 -0.9629 14 6 5.7332 -0.4425 -3.0985 15 7 5.8762 1.0035 -3.2853 16 6 6.2065 1.4973 -4.4951 17 8 6.3857 0.7419 -5.4324 18 6 6.3501 2.9441 -4.6819 19 6 6.6776 3.5587 -5.8485 20 6 6.7484 4.9456 -5.7572 21 6 6.4807 5.4269 -4.5316 22 16 6.1261 4.1576 -3.4345 23 6 6.5817 6.9472 -4.5247 24 6 7.3801 7.2973 -5.7961 25 6 7.0591 6.0990 -6.7102 26 6 3.9269 -0.2402 -1.3407 27 1 -0.4849 0.8401 0.0004 28 1 3.7684 -3.2937 -0.1844 29 1 4.7883 -2.1414 0.7288 30 1 4.8575 -2.7748 -2.2722 31 1 6.2304 -2.6757 -1.1194 32 1 4.9514 -0.8186 -3.7584 33 1 6.6766 -0.9345 -3.3355 34 1 5.7338 1.6054 -2.5382 35 1 6.8664 3.0191 -6.7648 36 1 7.1144 7.2878 -3.6368 37 1 5.5887 7.3950 -4.5653 38 1 8.4479 7.3500 -5.5839 39 1 7.0253 8.2295 -6.2357 40 1 7.9206 5.8551 -7.3318 41 1 6.1927 6.3186 -7.3342 42 1 3.9677 0.7187 -0.8242 43 1 3.3645 -0.1400 -2.2690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028972621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:46 Heat of formation + Delta-G solvation = 24.295639 kcal Electronic energy + Delta-G solvation = -24117.591519 eV Core-core repulsion = 20675.907724 eV Total energy + Delta-G solvation = -3441.683795 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.05862 -39.35832 -37.98330 -34.85855 -34.53164 -32.59390 -30.62690 -29.10627 -28.79496 -28.15135 -25.84605 -24.14443 -23.03880 -22.00271 -20.75928 -20.32915 -20.00579 -18.83025 -18.04350 -16.98006 -16.44617 -16.22159 -16.00060 -15.69123 -15.10173 -14.79226 -14.45165 -13.86721 -13.54375 -13.45090 -13.27107 -13.03307 -12.75361 -12.66328 -12.49195 -12.27834 -12.06494 -11.97108 -11.60105 -11.57258 -11.32582 -11.19862 -11.09764 -10.97016 -10.72912 -10.59401 -10.25436 -10.06172 -9.88881 -9.36649 -9.13857 -8.83076 -8.64392 -8.56225 -7.08412 -5.96488 -3.24701 0.34901 1.13681 1.72337 2.11429 3.05859 3.14667 3.30458 3.42081 3.47030 4.12218 4.16126 4.52601 4.58690 4.62551 4.78617 4.91243 5.00822 5.04336 5.09632 5.14379 5.22930 5.29789 5.37437 5.42521 5.48971 5.53967 5.60513 5.68891 5.76182 5.78542 5.85403 5.99603 6.04142 6.06090 6.12880 6.25190 6.31020 6.43614 6.57567 6.71518 6.77172 7.39145 7.69346 8.08847 8.29903 8.81920 9.67624 10.16486 11.20114 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.003521 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.616423 B = 7950.201001 C = 9216.314334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.094 0.906 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.120 4.120 12 C -0.118 4.118 13 H 0.081 0.919 14 C 0.133 3.867 15 N -0.722 5.722 16 C 0.592 3.408 17 O -0.532 6.532 18 C -0.264 4.264 19 C -0.037 4.037 20 C -0.140 4.140 21 C -0.222 4.222 22 S 0.220 5.780 23 C -0.045 4.045 24 C -0.118 4.118 25 C -0.057 4.057 26 C 0.124 3.876 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.398 0.602 35 H 0.151 0.849 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.023 0.977 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.837 12.680 -10.171 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.111 0.889 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.159 4.159 12 C -0.137 4.137 13 H 0.099 0.901 14 C 0.010 3.990 15 N -0.373 5.373 16 C 0.378 3.622 17 O -0.410 6.410 18 C -0.384 4.384 19 C -0.071 4.071 20 C -0.153 4.153 21 C -0.341 4.341 22 S 0.491 5.509 23 C -0.084 4.084 24 C -0.156 4.156 25 C -0.096 4.096 26 C -0.001 4.001 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.169 0.831 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.041 0.959 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.300 12.097 -9.198 23.026 hybrid contribution 0.605 1.420 -0.978 1.827 sum 17.905 13.517 -10.175 24.634 Atomic orbital electron populations 1.69863 1.05515 1.26549 1.53040 1.24959 0.95144 0.97348 1.00319 0.86941 0.78988 0.84966 0.77618 1.21229 1.23131 1.20647 1.18679 0.85225 0.95654 1.37397 0.88890 1.44860 1.10896 1.22147 1.55788 1.21616 0.90140 0.93093 0.94453 1.22730 0.99547 0.93628 1.00031 1.22479 0.98321 0.98226 0.94679 0.90107 1.21487 1.01915 0.79014 0.96589 1.45937 1.70805 1.09412 1.11141 1.16845 0.76832 0.85496 0.83001 1.90819 1.51164 1.58590 1.40455 1.24254 1.17715 0.97371 0.99043 1.20180 0.96594 0.92226 0.98051 1.20384 1.05614 0.93468 0.95843 1.25685 1.07457 1.02093 0.98868 1.83052 1.64884 0.93015 1.09991 1.20884 1.01402 0.86844 0.99300 1.22283 1.00567 0.98065 0.94727 1.20989 1.01900 0.90477 0.96197 1.21769 0.90732 0.92808 0.94819 0.92721 0.93089 0.95746 0.90805 0.91150 0.90568 0.90940 0.76747 0.83136 0.90421 0.89643 0.90609 0.89961 0.90605 0.90149 0.95931 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.16 13.97 55.49 0.78 -27.39 16 2 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 3 Si 0.88 22.60 24.38 -169.99 -4.15 18.46 16 4 H -0.28 -6.98 6.83 56.52 0.39 -6.60 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.28 -6.98 6.87 56.52 0.39 -6.59 16 7 C -0.24 -6.93 10.56 -15.06 -0.16 -7.09 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.61 -14.74 3.22 -169.83 -0.55 -15.28 16 10 C 0.13 2.54 7.23 -2.53 -0.02 2.52 16 11 C -0.12 -1.83 6.54 -24.58 -0.16 -1.99 16 12 C -0.12 -1.89 2.98 -88.78 -0.26 -2.15 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 14 C 0.13 1.99 5.00 -4.04 -0.02 1.97 16 15 N -0.72 -10.85 5.43 -61.64 -0.33 -11.18 16 16 C 0.59 9.40 7.78 -12.89 -0.10 9.30 16 17 O -0.53 -9.81 16.83 5.19 0.09 -9.72 16 18 C -0.26 -3.63 6.41 -37.07 -0.24 -3.87 16 19 C -0.04 -0.47 9.99 -40.08 -0.40 -0.87 16 20 C -0.14 -1.50 6.49 -104.59 -0.68 -2.18 16 21 C -0.22 -2.33 7.10 -34.84 -0.25 -2.58 16 22 S 0.22 2.60 22.15 -107.50 -2.38 0.22 16 23 C -0.05 -0.34 6.81 -26.45 -0.18 -0.52 16 24 C -0.12 -0.70 7.10 -25.56 -0.18 -0.88 16 25 C -0.06 -0.42 6.81 -26.26 -0.18 -0.60 16 26 C 0.12 2.65 4.55 -2.91 -0.01 2.63 16 27 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.40 5.63 7.51 -40.82 -0.31 5.32 16 35 H 0.15 1.78 8.05 -52.49 -0.42 1.36 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.52 3.55 -51.93 -0.18 0.34 16 43 H 0.04 0.99 7.73 -51.93 -0.40 0.59 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -33.85 356.38 -10.49 -44.34 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.38 Total: 0.96 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.94 Total: -5.77 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.11 Total: -53.85 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.15 Total: 18.46 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.38 Total: 0.22 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.85 -10.49 -44.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028972621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.638 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds