Wall clock time and date at job start Tue Mar 31 2020 13:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00371 * 2 1 4 4 H 1.48504 * 109.47239 * 264.67360 * 3 2 1 5 5 H 1.48504 * 109.46709 * 24.67178 * 3 2 1 6 6 H 1.48495 * 109.47274 * 144.67050 * 3 2 1 7 7 C 1.38818 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99831 * 336.23836 * 7 2 1 9 9 N 1.36937 * 119.99892 * 156.24071 * 7 2 1 10 10 C 1.47427 * 125.64276 * 162.04863 * 9 7 2 11 11 C 1.54910 * 104.82909 * 155.90704 * 10 9 7 12 12 C 1.55163 * 101.57982 * 37.00782 * 11 10 9 13 13 H 1.09003 * 110.71612 * 83.04282 * 12 11 10 14 14 C 1.53001 * 110.71873 * 206.13140 * 12 11 10 15 15 N 1.46503 * 109.47055 * 182.55948 * 14 12 11 16 16 C 1.34780 * 119.99912 * 179.97438 * 15 14 12 17 17 O 1.21701 * 119.99867 * 0.02562 * 16 15 14 18 18 C 1.46585 * 119.99764 * 180.02562 * 16 15 14 19 19 C 1.35869 * 125.41414 * 180.02562 * 18 16 15 20 20 C 1.39171 * 114.00009 * 179.97438 * 19 18 16 21 21 C 1.34371 * 113.99589 * 0.02562 * 20 19 18 22 22 S 1.71480 * 111.07671 * 359.97438 * 21 20 19 23 23 C 1.52369 * 110.38587 * 179.97438 * 21 20 19 24 24 C 1.54160 * 104.90405 * 342.46064 * 23 21 20 25 25 C 1.52812 * 136.19228 * 180.02562 * 20 19 18 26 26 C 1.47318 * 125.61739 * 342.27588 * 9 7 2 27 27 H 0.97005 * 119.99378 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.36905 * 37.07090 * 10 9 7 29 29 H 1.09001 * 110.46096 * 274.78636 * 10 9 7 30 30 H 1.09003 * 111.00570 * 278.93860 * 11 10 9 31 31 H 1.08998 * 111.03665 * 155.09595 * 11 10 9 32 32 H 1.09005 * 109.46793 * 62.56488 * 14 12 11 33 33 H 1.09000 * 109.47628 * 302.56032 * 14 12 11 34 34 H 0.96992 * 119.99806 * 0.02562 * 15 14 12 35 35 H 1.08000 * 123.00290 * 359.95365 * 19 18 16 36 36 H 1.09000 * 110.35640 * 223.59925 * 23 21 20 37 37 H 1.09006 * 110.44246 * 101.36051 * 23 21 20 38 38 H 1.09004 * 110.95851 * 268.59534 * 24 23 21 39 39 H 1.09001 * 110.99631 * 144.86107 * 24 23 21 40 40 H 1.09002 * 110.33110 * 316.51541 * 25 20 19 41 41 H 1.09005 * 110.32948 * 78.63196 * 25 20 19 42 42 H 1.08998 * 110.06486 * 61.67621 * 26 9 7 43 43 H 1.09001 * 109.84665 * 300.41577 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6104 1.9814 -1.3940 5 1 1.3960 2.6825 0.5844 6 1 3.4870 1.4752 0.8096 7 6 2.0103 -1.2022 -0.0005 8 1 1.5389 -2.0980 0.3759 9 7 3.2926 -1.2523 -0.4784 10 6 4.2677 -2.3251 -0.2110 11 6 5.2608 -2.2631 -1.3983 12 6 5.3570 -0.7342 -1.6444 13 1 6.0753 -0.2784 -0.9629 14 6 5.7332 -0.4425 -3.0985 15 7 5.8762 1.0035 -3.2853 16 6 6.2065 1.4973 -4.4951 17 8 6.3857 0.7419 -5.4324 18 6 6.3501 2.9441 -4.6819 19 6 6.6776 3.5587 -5.8485 20 6 6.7484 4.9456 -5.7572 21 6 6.4807 5.4269 -4.5316 22 16 6.1261 4.1576 -3.4345 23 6 6.5817 6.9472 -4.5247 24 6 7.3801 7.2973 -5.7961 25 6 7.0591 6.0990 -6.7102 26 6 3.9269 -0.2402 -1.3407 27 1 -0.4849 0.8401 0.0004 28 1 3.7684 -3.2937 -0.1844 29 1 4.7883 -2.1414 0.7288 30 1 4.8575 -2.7748 -2.2722 31 1 6.2304 -2.6757 -1.1194 32 1 4.9514 -0.8186 -3.7584 33 1 6.6766 -0.9345 -3.3355 34 1 5.7338 1.6054 -2.5382 35 1 6.8664 3.0191 -6.7648 36 1 7.1144 7.2878 -3.6368 37 1 5.5887 7.3950 -4.5653 38 1 8.4479 7.3500 -5.5839 39 1 7.0253 8.2295 -6.2357 40 1 7.9206 5.8551 -7.3318 41 1 6.1927 6.3186 -7.3342 42 1 3.9677 0.7187 -0.8242 43 1 3.3645 -0.1400 -2.2690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028972621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:46 Heat of formation + Delta-G solvation = 2.183467 kcal Electronic energy + Delta-G solvation = -24118.550374 eV Core-core repulsion = 20675.907724 eV Total energy + Delta-G solvation = -3442.642651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13415 -40.27819 -39.46801 -36.19603 -35.38730 -34.53023 -32.33744 -30.46874 -29.53933 -29.13082 -27.37993 -25.66581 -24.20905 -22.77520 -22.08912 -21.84483 -21.12003 -19.74834 -19.09049 -18.91685 -17.84996 -17.44587 -16.91080 -16.72992 -16.34510 -16.11860 -15.57135 -15.40481 -15.09777 -14.97923 -14.44403 -14.24236 -13.82866 -13.78880 -13.48563 -13.39945 -13.28413 -13.03923 -13.00960 -12.75176 -12.68040 -12.43441 -12.16771 -12.07998 -11.94754 -11.86244 -11.73853 -11.63096 -11.32400 -11.22922 -10.78879 -10.34826 -9.73894 -9.40443 -9.10353 -8.21939 -5.46222 -0.59135 0.24733 0.84038 1.20783 1.24353 1.32703 1.43674 1.92724 2.02940 2.38052 2.97777 3.26666 3.39632 3.52181 3.63508 3.74173 3.79689 3.84766 4.12018 4.15629 4.31256 4.32698 4.43540 4.50716 4.58926 4.59997 4.69619 4.77491 4.78928 4.82884 4.87361 4.94414 5.00322 5.07158 5.11470 5.13355 5.20380 5.23065 5.33330 5.34429 5.41551 5.65897 6.06916 6.22657 6.73292 6.90856 7.51222 8.07911 8.98384 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.003521 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.616423 B = 7950.201001 C = 9216.314334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.041 4.041 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.308 1.308 6 H -0.265 1.265 7 C -0.237 4.237 8 H 0.061 0.939 9 N -0.631 5.631 10 C 0.122 3.878 11 C -0.106 4.106 12 C -0.101 4.101 13 H 0.106 0.894 14 C 0.138 3.862 15 N -0.721 5.721 16 C 0.591 3.409 17 O -0.567 6.567 18 C -0.296 4.296 19 C -0.037 4.037 20 C -0.154 4.154 21 C -0.217 4.217 22 S 0.219 5.781 23 C -0.049 4.049 24 C -0.110 4.110 25 C -0.057 4.057 26 C 0.118 3.882 27 H 0.262 0.738 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.403 0.597 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.016 0.984 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.937 14.745 -10.685 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.236 4.236 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.237 1.237 6 H -0.191 1.191 7 C -0.366 4.366 8 H 0.079 0.921 9 N -0.358 5.358 10 C -0.002 4.002 11 C -0.144 4.144 12 C -0.121 4.121 13 H 0.124 0.876 14 C 0.015 3.985 15 N -0.371 5.371 16 C 0.379 3.621 17 O -0.448 6.448 18 C -0.416 4.416 19 C -0.071 4.071 20 C -0.166 4.166 21 C -0.337 4.337 22 S 0.489 5.511 23 C -0.088 4.088 24 C -0.148 4.148 25 C -0.096 4.096 26 C -0.007 4.007 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.238 0.762 35 H 0.167 0.833 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.033 0.967 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 20.449 14.148 -9.697 26.690 hybrid contribution -0.386 0.715 -0.831 1.162 sum 20.063 14.863 -10.527 27.097 Atomic orbital electron populations 1.69996 1.07232 1.27236 1.55730 1.25646 0.95848 1.00908 1.01190 0.85905 0.77821 0.80249 0.78319 1.19885 1.23668 1.19117 1.18655 0.87315 0.94564 1.36054 0.92130 1.45014 1.10476 1.24134 1.56136 1.21892 0.90077 0.91307 0.96914 1.22711 1.00433 0.93075 0.98183 1.22411 0.95090 0.98793 0.95766 0.87586 1.21426 1.02388 0.79246 0.95420 1.45936 1.70433 1.09556 1.11188 1.17120 0.76058 0.86290 0.82636 1.90786 1.52964 1.59695 1.41404 1.24130 1.20243 0.96762 1.00425 1.20393 0.95665 0.93377 0.97666 1.20742 1.05554 0.93274 0.97033 1.26205 1.05666 1.03588 0.98202 1.82941 1.65114 0.93157 1.09844 1.21105 1.02493 0.84377 1.00806 1.22324 1.00884 0.98229 0.93393 1.21127 1.02668 0.89702 0.96106 1.21856 0.93647 0.92154 0.93019 0.92919 0.93492 0.94427 0.90712 0.86699 0.92360 0.88686 0.76182 0.83325 0.89130 0.88673 0.89881 0.87670 0.89623 0.89402 0.96662 0.96279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.54 13.97 21.65 0.30 -61.24 16 2 C -0.04 -2.49 5.43 84.86 0.46 -2.03 16 3 Si 0.95 47.35 24.38 68.60 1.67 49.02 16 4 H -0.27 -12.88 6.83 99.48 0.68 -12.20 16 5 H -0.31 -15.49 7.11 99.48 0.71 -14.79 16 6 H -0.27 -12.49 6.87 99.48 0.68 -11.81 16 7 C -0.24 -13.91 10.56 84.03 0.89 -13.02 16 8 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 9 N -0.63 -30.29 3.22 -691.23 -2.22 -32.51 16 10 C 0.12 4.47 7.23 86.85 0.63 5.10 16 11 C -0.11 -2.84 6.54 31.99 0.21 -2.63 16 12 C -0.10 -2.96 2.98 -9.61 -0.03 -2.99 16 13 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 14 C 0.14 3.86 5.00 86.38 0.43 4.30 16 15 N -0.72 -20.77 5.43 -467.15 -2.53 -23.30 16 16 C 0.59 18.58 7.78 86.42 0.67 19.25 16 17 O -0.57 -21.02 16.83 -4.35 -0.07 -21.09 16 18 C -0.30 -8.01 6.41 23.90 0.15 -7.86 16 19 C -0.04 -0.90 9.99 21.94 0.22 -0.68 16 20 C -0.15 -3.02 6.49 -19.84 -0.13 -3.15 16 21 C -0.22 -4.11 7.10 25.34 0.18 -3.93 16 22 S 0.22 4.89 22.15 -56.49 -1.25 3.64 16 23 C -0.05 -0.57 6.81 30.78 0.21 -0.36 16 24 C -0.11 -0.90 7.10 31.35 0.22 -0.67 16 25 C -0.06 -0.69 6.81 30.90 0.21 -0.48 16 26 C 0.12 4.91 4.55 86.67 0.39 5.31 16 27 H 0.26 16.01 8.31 -92.70 -0.77 15.24 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 2.03 8.05 -2.39 -0.02 2.01 16 31 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 1.86 8.00 -2.38 -0.02 1.84 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.40 10.76 7.51 -92.71 -0.70 10.06 16 35 H 0.15 3.55 8.05 -2.91 -0.02 3.52 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 41 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.02 0.69 3.55 -2.39 -0.01 0.68 16 43 H 0.02 0.88 7.73 -2.39 -0.02 0.87 16 Total: -1.00 -76.40 356.38 0.89 -75.51 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.28 Total: 13.84 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 4.72 Total: -3.86 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -4.46 Total: -117.05 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.07 Total: -21.09 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.67 Total: 49.02 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -1.25 Total: 3.64 kcal Total: -76.40 0.89 -75.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028972621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.692 kcal (2) G-P(sol) polarization free energy of solvation -76.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds