Wall clock time and date at job start Tue Mar 31 2020 13:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48496 * 109.46978 * 240.00424 * 3 2 1 5 5 H 1.48510 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47235 * 120.00048 * 3 2 1 7 7 C 1.38806 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00046 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49104 * 180.02562 * 9 7 2 11 11 C 1.53941 * 86.11624 * 155.35315 * 10 9 7 12 12 N 1.46505 * 113.74283 * 137.95144 * 11 10 9 13 13 C 1.34768 * 119.99960 * 156.92605 * 12 11 10 14 14 O 1.21703 * 120.00559 * 359.97438 * 13 12 11 15 15 C 1.46588 * 119.99689 * 180.02562 * 13 12 11 16 16 C 1.36277 * 125.48991 * 179.97438 * 15 13 12 17 17 C 1.38437 * 113.81510 * 180.02562 * 16 15 13 18 18 C 1.33812 * 114.17235 * 359.66695 * 17 16 15 19 19 S 1.70755 * 111.45287 * 0.46444 * 18 17 16 20 20 C 1.52630 * 124.26521 * 180.51108 * 18 17 16 21 21 C 1.53116 * 107.66735 * 293.46864 * 20 18 17 22 22 C 1.51152 * 111.12111 * 80.63823 * 21 20 18 23 23 C 1.50972 * 115.84229 * 288.24662 * 22 21 20 24 24 C 1.52922 * 111.54530 * 72.35750 * 23 22 21 25 25 C 1.47807 * 134.45590 * 359.86368 * 9 7 2 26 26 H 0.97009 * 119.99756 * 359.97438 * 1 2 3 27 27 H 1.08998 * 113.77028 * 41.05259 * 10 9 7 28 28 H 1.08999 * 113.76983 * 269.65874 * 10 9 7 29 29 H 1.09006 * 113.74742 * 269.15323 * 11 10 9 30 30 H 0.97000 * 119.99666 * 336.92934 * 12 11 10 31 31 H 1.08007 * 123.08789 * 0.04285 * 16 15 13 32 32 H 1.09002 * 109.83034 * 53.03099 * 20 18 17 33 33 H 1.09002 * 109.83060 * 173.90711 * 20 18 17 34 34 H 1.08999 * 109.13601 * 201.16529 * 21 20 18 35 35 H 1.08998 * 109.14143 * 320.29270 * 21 20 18 36 36 H 1.09006 * 108.19098 * 166.59481 * 22 21 20 37 37 H 1.08997 * 108.18677 * 49.90602 * 22 21 20 38 38 H 1.08999 * 109.06710 * 311.82509 * 23 22 21 39 39 H 1.09001 * 109.06367 * 192.88390 * 23 22 21 40 40 H 1.08999 * 109.82671 * 159.23489 * 24 23 22 41 41 H 1.09007 * 109.82824 * 38.30833 * 24 23 22 42 42 H 1.09001 * 113.76780 * 90.38442 * 25 9 7 43 43 H 1.09005 * 113.83959 * 318.92220 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7201 -3.8101 -0.0005 11 6 0.3471 -4.0829 0.6400 12 7 -0.3334 -5.2613 0.0972 13 6 -1.2732 -5.8930 0.8279 14 8 -1.5564 -5.4848 1.9390 15 6 -1.9537 -7.0724 0.2850 16 6 -2.9167 -7.7943 0.9241 17 6 -3.3952 -8.8639 0.1869 18 6 -2.8328 -8.9924 -1.0205 19 16 -1.6594 -7.7827 -1.2949 20 6 -3.1954 -10.0822 -2.0258 21 6 -2.7546 -11.4244 -1.4354 22 6 -3.7645 -11.9371 -0.4345 23 6 -3.8232 -11.1962 0.8796 24 6 -4.4673 -9.8185 0.7192 25 6 -0.1058 -2.7570 0.0024 26 1 -0.4850 0.8401 0.0004 27 1 2.5624 -4.0324 0.6546 28 1 1.8318 -4.2351 -0.9981 29 1 0.3595 -4.0638 1.7298 30 1 -0.1075 -5.5869 -0.7882 31 1 -3.2739 -7.5539 1.9147 32 1 -4.2726 -10.0876 -2.1928 33 1 -2.6763 -9.9040 -2.9676 34 1 -2.6465 -12.1508 -2.2408 35 1 -1.7928 -11.2976 -0.9384 36 1 -3.5366 -12.9826 -0.2263 37 1 -4.7516 -11.8939 -0.8946 38 1 -2.8109 -11.0733 1.2646 39 1 -4.4053 -11.7806 1.5921 40 1 -4.8303 -9.4655 1.6845 41 1 -5.2943 -9.8772 0.0115 42 1 -0.5319 -2.8717 -0.9942 43 1 -0.7184 -2.1401 0.6600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031348983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:21 Heat of formation + Delta-G solvation = 12.731325 kcal Electronic energy + Delta-G solvation = -23823.457021 eV Core-core repulsion = 20381.271760 eV Total energy + Delta-G solvation = -3442.185261 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13778 -40.18197 -39.17050 -36.45379 -35.24305 -33.83620 -33.15447 -31.34536 -29.48936 -26.82936 -26.67078 -26.13702 -24.93613 -23.33399 -21.78226 -21.45224 -21.07822 -19.50862 -18.98898 -18.77829 -17.50202 -17.10046 -16.97049 -16.26537 -16.11511 -15.75882 -15.60610 -15.18521 -14.79910 -14.71911 -14.51593 -14.25092 -14.01408 -13.71888 -13.39783 -13.27221 -13.13840 -12.90019 -12.78878 -12.66166 -12.53691 -12.36376 -12.14957 -11.98193 -11.76832 -11.57344 -11.48449 -11.46849 -11.34423 -11.14545 -10.90344 -10.14946 -9.62225 -9.30708 -9.01448 -7.93829 -5.30206 -0.48074 0.47016 0.90790 1.34452 1.44568 1.49236 1.55327 2.00960 2.12911 2.47910 3.21309 3.35701 3.61638 3.71695 3.78008 3.95495 4.01281 4.11784 4.13873 4.26446 4.42060 4.43892 4.44852 4.57853 4.68445 4.68936 4.81875 4.84877 4.91638 4.97287 5.00883 5.05635 5.18560 5.22507 5.27319 5.31550 5.34337 5.40624 5.43938 5.55317 5.57419 5.60209 5.85448 6.41750 6.84976 7.07868 7.55395 8.47561 9.22907 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.036570 B = 0.002391 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.462356 B =11707.487282 C =11992.439443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.986 3.014 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.237 4.237 8 H 0.093 0.907 9 N -0.637 5.637 10 C 0.123 3.877 11 C 0.118 3.882 12 N -0.700 5.700 13 C 0.586 3.414 14 O -0.579 6.579 15 C -0.297 4.297 16 C -0.051 4.051 17 C -0.129 4.129 18 C -0.182 4.182 19 S 0.224 5.776 20 C -0.047 4.047 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.051 4.051 25 C 0.153 3.847 26 H 0.249 0.751 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.409 0.591 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.026 0.974 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.136 -28.892 -5.637 30.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.813 3.187 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.365 4.365 8 H 0.110 0.890 9 N -0.364 5.364 10 C -0.002 4.002 11 C 0.013 3.987 12 N -0.350 5.350 13 C 0.374 3.626 14 O -0.460 6.460 15 C -0.417 4.417 16 C -0.086 4.086 17 C -0.141 4.141 18 C -0.302 4.302 19 S 0.495 5.505 20 C -0.086 4.086 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.091 4.091 25 C 0.026 3.974 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.245 0.755 31 H 0.158 0.842 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.044 0.956 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.241 -27.885 -6.093 29.447 hybrid contribution -0.554 1.144 1.054 1.652 sum -7.796 -26.741 -5.038 28.306 Atomic orbital electron populations 1.70048 1.06747 1.25879 1.57806 1.25772 0.96595 1.01380 1.02605 0.85045 0.77032 0.78111 0.78478 1.19817 1.22220 1.20005 1.19414 0.91031 0.82749 1.43293 0.88974 1.46028 1.03157 1.00839 1.86418 1.23010 0.94761 0.83652 0.98776 1.23291 0.93385 0.83272 0.98802 1.45760 1.39381 1.29835 1.20073 1.17424 0.78840 0.81943 0.84355 1.90793 1.65798 1.67857 1.21590 1.24184 1.09694 1.04662 1.03161 1.20931 0.93751 0.93249 1.00645 1.19522 1.02570 0.98125 0.93899 1.24941 1.01980 1.02795 1.00514 1.82795 1.36190 1.20035 1.11497 1.20825 1.03069 0.90110 0.94560 1.21213 0.99038 0.95483 0.99224 1.20831 1.00110 0.99758 0.94935 1.21117 1.00762 0.94950 0.98261 1.20825 0.94389 0.92541 1.01303 1.22582 0.87503 0.90828 0.96487 0.94214 0.91294 0.91600 0.88646 0.75488 0.84200 0.88311 0.89417 0.89391 0.92885 0.91465 0.91175 0.93350 0.90361 0.90620 0.89359 0.95643 0.94699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.02 11.39 21.65 0.25 -59.78 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 3 Si 0.99 46.52 29.55 68.60 2.03 48.55 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.24 -13.51 10.70 84.03 0.90 -12.61 16 8 H 0.09 4.91 7.83 -2.91 -0.02 4.88 16 9 N -0.64 -33.60 3.70 -716.80 -2.65 -36.25 16 10 C 0.12 4.89 8.69 86.48 0.75 5.64 16 11 C 0.12 4.87 4.40 46.74 0.21 5.08 16 12 N -0.70 -23.57 5.37 -451.50 -2.42 -26.00 16 13 C 0.59 21.06 7.78 86.42 0.67 21.73 16 14 O -0.58 -25.70 16.46 -4.36 -0.07 -25.77 16 15 C -0.30 -8.35 6.44 23.99 0.15 -8.19 16 16 C -0.05 -1.31 9.78 21.86 0.21 -1.10 16 17 C -0.13 -2.48 5.06 -20.04 -0.10 -2.58 16 18 C -0.18 -3.09 5.46 25.30 0.14 -2.96 16 19 S 0.22 4.41 22.10 -56.49 -1.25 3.17 16 20 C -0.05 -0.48 5.86 30.51 0.18 -0.30 16 21 C -0.11 -0.99 5.61 30.03 0.17 -0.82 16 22 C -0.12 -0.99 5.14 29.33 0.15 -0.84 16 23 C -0.11 -1.26 5.56 29.91 0.17 -1.10 16 24 C -0.05 -0.69 5.81 30.60 0.18 -0.51 16 25 C 0.15 7.79 7.32 86.44 0.63 8.43 16 26 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.07 2.27 8.11 -2.39 -0.02 2.25 16 29 H 0.10 4.31 7.50 -2.38 -0.02 4.30 16 30 H 0.41 11.17 7.83 -92.71 -0.73 10.44 16 31 H 0.14 3.72 8.05 -2.91 -0.02 3.70 16 32 H 0.10 0.82 7.87 -2.39 -0.02 0.80 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.05 0.63 7.91 -2.39 -0.02 0.61 16 36 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.07 0.46 7.71 -2.39 -0.02 0.44 16 38 H 0.05 0.70 7.89 -2.39 -0.02 0.68 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 41 H 0.09 0.95 7.88 -2.38 -0.02 0.94 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.03 2.06 7.17 -2.38 -0.02 2.04 16 Total: -1.00 -74.94 360.00 1.05 -73.90 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.29 Total: 15.99 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.88 Total: 6.21 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -4.83 Total: -122.03 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.07 Total: -25.77 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.25 Total: 3.17 kcal Total: -74.94 1.05 -73.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031348983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.627 kcal (2) G-P(sol) polarization free energy of solvation -74.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds