Wall clock time and date at job start Tue Mar 31 2020 13:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35766 * 117.00019 * 2 1 4 4 C 1.38922 * 119.91787 * 0.02562 * 3 2 1 5 5 C 1.37742 * 120.11595 * 179.71942 * 4 3 2 6 6 C 1.39724 * 119.94766 * 0.51174 * 5 4 3 7 7 C 1.47607 * 120.07732 * 179.76505 * 6 5 4 8 8 O 1.21581 * 119.99455 * 185.80220 * 7 6 5 9 9 N 1.34772 * 119.99876 * 5.80821 * 7 6 5 10 10 C 1.47870 * 126.94808 * 354.12047 * 9 7 6 11 11 C 1.56019 * 105.10357 * 182.00814 * 10 9 7 12 12 H 1.08998 * 116.24657 * 159.68585 * 11 10 9 13 13 C 1.57082 * 99.61009 * 32.80726 * 11 10 9 14 14 C 1.49292 * 126.94252 * 174.13098 * 9 7 6 15 15 H 1.08996 * 116.15249 * 15.83115 * 14 9 7 16 16 C 1.56025 * 104.08791 * 246.69316 * 14 9 7 17 17 N 1.47866 * 105.10331 * 288.76465 * 16 14 9 18 18 C 1.36938 * 126.94476 * 182.02584 * 17 16 14 19 19 H 1.08001 * 120.00386 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99684 * 359.97438 * 18 17 16 21 21 N 1.31610 * 120.00122 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99684 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46757 * 89.99650 * 22 20 18 24 24 H 1.48504 * 109.46681 * 209.99724 * 22 20 18 25 25 H 1.48495 * 109.46979 * 329.99408 * 22 20 18 26 26 C 1.39735 * 119.84099 * 359.48955 * 6 5 4 27 27 C 1.37905 * 119.87964 * 0.24982 * 26 6 5 28 28 F 1.35101 * 119.96986 * 179.97438 * 27 26 6 29 29 H 1.08998 * 109.46840 * 59.99925 * 1 2 3 30 30 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46907 * 300.00265 * 1 2 3 32 32 H 1.07996 * 119.94394 * 359.95255 * 4 3 2 33 33 H 1.07991 * 120.02526 * 180.25423 * 5 4 3 34 34 H 1.08998 * 110.31344 * 300.91606 * 10 9 7 35 35 H 1.08998 * 110.31196 * 63.09923 * 10 9 7 36 36 H 1.09000 * 112.36690 * 191.71816 * 13 11 10 37 37 H 1.08998 * 112.36554 * 64.27270 * 13 11 10 38 38 H 1.08994 * 110.31500 * 47.67236 * 16 14 9 39 39 H 1.09005 * 110.30991 * 169.86324 * 16 14 9 40 40 H 0.97002 * 120.00394 * 180.02562 * 21 20 18 41 41 H 1.07991 * 120.06232 * 180.23251 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2871 2.3737 0.0005 5 6 1.9082 3.6031 0.0064 6 6 3.3033 3.6798 0.0010 7 6 3.9718 4.9959 0.0019 8 8 5.1806 5.0636 -0.1092 9 7 3.2422 6.1222 0.1262 10 6 1.7675 6.2279 0.1494 11 6 1.4711 7.7557 0.2591 12 1 0.4759 8.0770 -0.0480 13 6 2.6903 8.3186 -0.5559 14 6 3.7597 7.5154 0.2680 15 1 4.8069 7.6678 0.0068 16 6 3.3413 7.9307 1.7125 17 7 1.8741 8.1049 1.6536 18 6 1.0513 8.5058 2.6722 19 1 -0.0117 8.5962 2.5040 20 6 1.5836 8.7962 3.9209 21 7 2.8788 8.6855 4.1261 22 14 0.4610 9.3425 5.3106 23 1 -0.0102 8.1523 6.0631 24 1 1.2080 10.2428 6.2253 25 1 -0.7068 10.0668 4.7478 26 6 4.0641 2.5078 0.0004 27 6 3.4352 1.2805 0.0000 28 9 4.1690 0.1461 -0.0010 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2087 2.3146 0.0002 33 1 1.3173 4.5070 0.0109 34 1 1.3448 5.8255 -0.7712 35 1 1.3639 5.7010 1.0140 36 1 2.8031 9.3967 -0.4421 37 1 2.6628 8.0186 -1.6035 38 1 3.6010 7.1454 2.4223 39 1 3.8227 8.8682 1.9911 40 1 3.2508 8.8881 4.9988 41 1 5.1426 2.5629 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032457574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:09 Heat of formation + Delta-G solvation = -23.320265 kcal Electronic energy + Delta-G solvation = -27213.533972 eV Core-core repulsion = 23203.572220 eV Total energy + Delta-G solvation = -4009.961752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.95595 -41.97984 -40.94503 -39.57777 -38.06363 -35.53864 -33.58434 -32.00428 -31.68196 -30.39145 -30.25712 -28.30986 -27.08052 -25.87263 -24.16820 -23.82221 -22.20102 -21.42956 -20.58371 -19.35281 -19.09489 -18.42412 -18.11171 -17.36006 -17.25625 -16.88491 -16.42702 -16.25310 -16.12083 -15.88787 -15.68804 -15.29891 -15.08481 -14.80467 -14.36729 -14.05869 -13.65811 -13.45439 -13.37549 -13.16317 -13.04076 -12.90155 -12.80293 -12.68959 -12.40509 -12.19710 -12.11554 -12.10101 -11.95854 -11.60197 -11.49369 -11.12349 -10.68522 -10.16134 -9.63981 -9.34751 -8.87936 -7.82014 -5.17558 -0.36270 -0.02422 1.49593 1.50342 1.59074 1.63826 1.86535 2.06237 2.50808 2.58404 3.05175 3.32315 3.36525 3.48836 3.56584 3.77421 3.80285 3.89635 4.01578 4.05007 4.23135 4.31727 4.37465 4.41869 4.49915 4.54987 4.66693 4.73444 4.80172 4.85631 4.91851 4.98176 5.05201 5.10063 5.16944 5.25348 5.39473 5.48142 5.55662 5.68600 6.11942 6.14601 6.57523 7.04842 7.06054 7.74021 8.43909 9.29277 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.003768 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.754440 B = 7429.149378 C = 8244.411201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.325 6.325 3 C 0.123 3.877 4 C -0.177 4.177 5 C -0.075 4.075 6 C -0.155 4.155 7 C 0.568 3.432 8 O -0.592 6.592 9 N -0.601 5.601 10 C 0.074 3.926 11 C 0.137 3.863 12 H 0.144 0.856 13 C -0.129 4.129 14 C 0.100 3.900 15 H 0.113 0.887 16 C 0.186 3.814 17 N -0.616 5.616 18 C -0.227 4.227 19 H 0.101 0.899 20 C -0.071 4.071 21 N -0.958 5.958 22 Si 0.974 3.026 23 H -0.291 1.291 24 H -0.305 1.305 25 H -0.260 1.260 26 C -0.067 4.067 27 C 0.038 3.962 28 F -0.140 7.140 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.184 0.816 33 H 0.186 0.814 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.104 0.896 38 H -0.004 1.004 39 H 0.019 0.981 40 H 0.242 0.758 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 -12.413 -13.235 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.238 6.238 3 C 0.076 3.924 4 C -0.195 4.195 5 C -0.092 4.092 6 C -0.158 4.158 7 C 0.360 3.640 8 O -0.475 6.475 9 N -0.332 5.332 10 C -0.049 4.049 11 C 0.030 3.970 12 H 0.162 0.838 13 C -0.168 4.168 14 C -0.003 4.003 15 H 0.131 0.869 16 C 0.060 3.940 17 N -0.340 5.340 18 C -0.355 4.355 19 H 0.118 0.882 20 C -0.263 4.263 21 N -0.608 5.608 22 Si 0.803 3.197 23 H -0.219 1.219 24 H -0.233 1.233 25 H -0.184 1.184 26 C -0.086 4.086 27 C 0.018 3.982 28 F -0.119 7.119 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.202 0.798 33 H 0.203 0.797 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.014 0.986 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.153 -12.616 -13.046 20.326 hybrid contribution 0.507 0.152 1.593 1.679 sum -8.647 -12.463 -11.453 19.007 Atomic orbital electron populations 1.23582 0.74950 1.06378 1.03376 1.86096 1.24763 1.25366 1.87579 1.19375 0.90250 0.86863 0.95941 1.21500 1.02277 0.89542 1.06196 1.22818 0.93001 1.01076 0.92320 1.19530 0.94832 0.91615 1.09868 1.18081 0.85881 0.83820 0.76240 1.90712 1.15483 1.87531 1.53766 1.49083 1.08759 1.05816 1.69588 1.23771 0.78746 1.00477 1.01946 1.23703 0.98664 0.90791 0.83820 0.83825 1.24069 0.94354 0.99600 0.98757 1.24239 0.99115 0.80029 0.96919 0.86919 1.21531 0.84907 0.96512 0.91057 1.45501 1.02616 1.78312 1.07560 1.19565 0.90905 1.36118 0.88936 0.88175 1.25634 0.97087 1.03175 1.00441 1.70154 1.11906 1.56503 1.22218 0.85134 0.78081 0.77278 0.79182 1.21878 1.23275 1.18433 1.20982 1.01415 0.89440 0.96805 1.16852 0.86924 0.82263 1.12141 1.91473 1.76999 1.48720 1.94694 0.90181 0.85919 0.90874 0.79846 0.79720 0.86593 0.91011 0.89950 0.87720 0.98554 0.96333 0.94865 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.32 -6.65 10.35 -90.93 -0.94 -7.59 16 3 C 0.12 2.85 6.70 22.66 0.15 3.00 16 4 C -0.18 -3.28 9.01 22.32 0.20 -3.08 16 5 C -0.07 -1.71 8.76 22.51 0.20 -1.51 16 6 C -0.16 -4.75 5.87 -20.08 -0.12 -4.87 16 7 C 0.57 21.19 7.85 86.72 0.68 21.87 16 8 O -0.59 -26.22 16.70 -3.97 -0.07 -26.28 16 9 N -0.60 -20.81 2.95 -775.93 -2.29 -23.10 16 10 C 0.07 2.02 4.23 87.16 0.37 2.39 16 11 C 0.14 4.17 5.53 46.93 0.26 4.43 16 12 H 0.14 3.44 8.14 -2.39 -0.02 3.42 16 13 C -0.13 -3.71 6.81 33.46 0.23 -3.48 16 14 C 0.10 3.73 5.26 46.93 0.25 3.98 16 15 H 0.11 4.25 8.03 -2.39 -0.02 4.24 16 16 C 0.19 8.98 4.76 87.17 0.42 9.40 16 17 N -0.62 -27.69 3.02 -648.53 -1.96 -29.65 16 18 C -0.23 -11.34 10.38 84.03 0.87 -10.47 16 19 H 0.10 4.54 7.83 -2.91 -0.02 4.51 16 20 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 21 N -0.96 -57.34 10.56 21.65 0.23 -57.12 16 22 Si 0.97 43.85 29.55 68.60 2.03 45.87 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.31 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 C -0.07 -2.03 9.56 22.55 0.22 -1.82 16 27 C 0.04 1.07 7.30 22.41 0.16 1.23 16 28 F -0.14 -4.18 17.10 44.97 0.77 -3.41 16 29 H 0.08 0.48 7.65 -2.39 -0.02 0.46 16 30 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 32 H 0.18 1.86 6.27 -2.91 -0.02 1.85 16 33 H 0.19 3.62 2.79 -4.50 -0.01 3.61 16 34 H 0.12 2.07 6.88 -2.39 -0.02 2.05 16 35 H 0.07 2.17 6.86 -2.39 -0.02 2.16 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.00 -0.22 7.68 -2.39 -0.02 -0.24 16 39 H 0.02 1.02 7.46 -2.38 -0.02 1.00 16 40 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.14 4.51 7.66 -2.92 -0.02 4.49 16 Total: -1.00 -75.48 336.50 4.30 -71.17 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.07 Total: 11.19 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 5.46 Total: 18.90 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -4.02 Total: -109.86 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.01 Total: -33.87 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.77 Total: -3.41 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -75.48 4.30 -71.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032457574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.854 kcal (2) G-P(sol) polarization free energy of solvation -75.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds