Wall clock time and date at job start Tue Mar 31 2020 13:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35712 * 116.99831 * 2 1 4 4 C 1.39101 * 119.88753 * 179.97438 * 3 2 1 5 5 C 1.37598 * 120.16280 * 180.02562 * 4 3 2 6 6 C 1.39815 * 119.93450 * 0.02562 * 5 4 3 7 7 C 1.47451 * 120.11569 * 179.97438 * 6 5 4 8 8 O 1.21599 * 120.00494 * 139.01852 * 7 6 5 9 9 N 1.34777 * 119.99529 * 319.02721 * 7 6 5 10 10 C 1.49761 * 127.90721 * 355.01719 * 9 7 6 11 11 C 1.56017 * 105.32068 * 181.26290 * 10 9 7 12 12 H 1.08998 * 116.25270 * 160.01254 * 11 10 9 13 13 C 1.57084 * 99.60688 * 33.13271 * 11 10 9 14 14 C 1.49294 * 126.94220 * 174.74379 * 9 7 6 15 15 H 1.09003 * 116.15434 * 16.69242 * 14 9 7 16 16 C 1.56028 * 104.08763 * 247.55549 * 14 9 7 17 17 N 1.47870 * 105.10209 * 287.91795 * 16 14 9 18 18 C 1.36938 * 126.94289 * 182.03970 * 17 16 14 19 19 H 1.07998 * 119.99815 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00174 * 359.97438 * 18 17 16 21 21 N 1.31627 * 119.99746 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00071 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47163 * 60.00468 * 22 20 18 24 24 H 1.48503 * 109.47194 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47447 * 300.00111 * 22 20 18 26 26 C 1.39988 * 119.77915 * 0.26741 * 6 5 4 27 27 F 1.35101 * 120.08347 * 179.72525 * 26 6 5 28 28 C 1.38065 * 119.83518 * 359.45368 * 26 6 5 29 29 H 1.09004 * 109.47535 * 300.00428 * 1 2 3 30 30 H 1.09006 * 109.47711 * 60.00274 * 1 2 3 31 31 H 1.09007 * 109.47454 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.91799 * 0.04792 * 4 3 2 33 33 H 1.08003 * 120.03595 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.93350 * 62.43002 * 10 9 7 35 35 H 1.08998 * 110.57370 * 300.42452 * 10 9 7 36 36 H 1.09001 * 112.36970 * 191.71748 * 13 11 10 37 37 H 1.08998 * 112.37019 * 64.27592 * 13 11 10 38 38 H 1.08993 * 110.31629 * 46.82332 * 16 14 9 39 39 H 1.08996 * 110.31211 * 168.91547 * 16 14 9 40 40 H 0.96996 * 119.99508 * 179.97438 * 21 20 18 41 41 H 1.08001 * 119.96546 * 180.29876 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4343 1.2793 0.0005 5 6 4.0648 2.5023 0.0011 6 6 3.3076 3.6777 0.0016 7 6 3.9791 4.9904 0.0028 8 8 3.5486 5.8943 -0.6874 9 7 5.0703 5.1884 0.7687 10 6 5.6864 4.2438 1.7541 11 6 6.8987 5.0153 2.3620 12 1 7.2717 4.6501 3.3189 13 6 6.3239 6.4767 2.3264 14 6 5.9301 6.4082 0.8073 15 1 5.5014 7.3122 0.3745 16 6 7.2899 5.9337 0.2070 17 7 7.8901 5.0710 1.2472 18 6 9.1094 4.4495 1.1982 19 1 9.4391 3.8413 2.0275 20 6 9.9214 4.6013 0.0827 21 7 9.5193 5.3422 -0.9282 22 14 11.5842 3.7530 0.0156 23 1 11.3953 2.2840 0.1245 24 1 12.2514 4.0725 -1.2721 25 1 12.4283 4.2283 1.1411 26 6 1.9096 3.6041 0.0073 27 9 1.1720 4.7359 0.0134 28 6 1.2866 2.3721 0.0009 29 1 -0.3634 0.5139 0.8899 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0195 0.3716 0.0002 33 1 5.1436 2.5544 0.0011 34 1 6.0285 3.3441 1.2427 35 1 4.9718 3.9857 2.5356 36 1 7.0886 7.2281 2.5232 37 1 5.4560 6.5971 2.9748 38 1 7.1218 5.3636 -0.7066 39 1 7.9337 6.7897 0.0053 40 1 10.0869 5.4485 -1.7075 41 1 0.2082 2.3129 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032502218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:12 Heat of formation + Delta-G solvation = -19.726886 kcal Electronic energy + Delta-G solvation = -27323.974335 eV Core-core repulsion = 23314.168404 eV Total energy + Delta-G solvation = -4009.805931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.93367 -40.49331 -39.86164 -38.09147 -36.87741 -33.60424 -31.81863 -30.94054 -30.42349 -28.87678 -28.55653 -27.68456 -25.25984 -24.15326 -22.91549 -22.75430 -20.75465 -19.85412 -18.93106 -18.48103 -17.57198 -17.13317 -16.45422 -16.22322 -16.06684 -15.77485 -15.42770 -15.12267 -14.77113 -14.56833 -14.24519 -13.99406 -13.59367 -13.18047 -13.06038 -12.74933 -12.61564 -12.25463 -12.06303 -11.81047 -11.70984 -11.44202 -11.25011 -11.23166 -10.99332 -10.85943 -10.73657 -10.61370 -10.27197 -10.10401 -9.65520 -9.57107 -9.13870 -8.72897 -8.46660 -8.00889 -6.95666 -5.78802 -3.13857 0.81290 1.00034 2.86920 2.93974 3.27294 3.36210 3.40670 3.42891 3.60605 4.04250 4.39900 4.49299 4.61566 4.66237 4.80129 4.82117 5.01235 5.05207 5.14112 5.16761 5.33558 5.37453 5.53859 5.62297 5.70858 5.77152 5.84226 5.87968 5.92096 6.10366 6.17839 6.28212 6.38241 6.39238 6.51059 6.57368 6.66330 6.99860 7.40097 7.46218 7.69608 8.02219 8.07982 8.53374 9.07802 9.68729 10.37758 11.33036 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.003832 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.119630 B = 7306.072778 C = 8322.493157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.172 3.828 4 C -0.166 4.166 5 C -0.017 4.017 6 C -0.191 4.191 7 C 0.577 3.423 8 O -0.544 6.544 9 N -0.603 5.603 10 C 0.082 3.918 11 C 0.141 3.859 12 H 0.108 0.892 13 C -0.150 4.150 14 C 0.098 3.902 15 H 0.113 0.887 16 C 0.174 3.826 17 N -0.597 5.597 18 C -0.234 4.234 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.187 3.813 27 F -0.121 7.121 28 C -0.258 4.258 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.255 0.745 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 -8.258 5.419 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.221 6.221 3 C 0.126 3.874 4 C -0.184 4.184 5 C -0.035 4.035 6 C -0.195 4.195 7 C 0.366 3.634 8 O -0.423 6.423 9 N -0.336 5.336 10 C -0.043 4.043 11 C 0.032 3.968 12 H 0.126 0.874 13 C -0.190 4.190 14 C -0.005 4.005 15 H 0.131 0.869 16 C 0.049 3.951 17 N -0.321 5.321 18 C -0.362 4.362 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.167 3.833 27 F -0.099 7.099 28 C -0.278 4.278 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.082 -7.977 4.799 18.582 hybrid contribution 0.429 -0.213 -0.232 0.532 sum -15.653 -8.191 4.567 18.247 Atomic orbital electron populations 1.23154 0.77952 1.04299 1.01785 1.86077 1.21803 1.26341 1.87862 1.18900 0.92071 0.83591 0.92870 1.20442 0.91003 0.99044 1.07945 1.21312 1.01053 0.89573 0.91594 1.19990 0.92046 0.95408 1.12082 1.17402 0.79467 0.86646 0.79917 1.90787 1.64831 1.43929 1.42707 1.49513 1.25806 1.18486 1.39804 1.23811 0.95895 0.93644 0.90920 1.23185 0.88028 0.92646 0.92975 0.87395 1.24142 1.00185 0.99374 0.95272 1.24346 0.91168 0.88026 0.96945 0.86899 1.21944 0.87448 0.94699 0.91021 1.45252 1.16163 1.56338 1.14394 1.18998 0.91460 1.23814 1.01897 0.90165 1.24821 0.98804 1.00039 0.96490 1.69908 1.37162 1.42246 1.07184 0.86198 0.83582 0.79028 0.76894 1.21132 1.21641 1.21127 1.17269 0.87619 0.81861 0.96577 1.91561 1.76376 1.49093 1.92855 1.21017 1.01151 0.90793 1.14818 0.92280 0.92259 0.87881 0.83827 0.82860 0.90682 0.92506 0.89641 0.91618 0.93427 0.92517 0.93492 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.80 101.05 0.99 1.13 16 2 O -0.31 -3.10 10.48 -18.84 -0.20 -3.30 16 3 C 0.17 1.99 6.69 -39.04 -0.26 1.73 16 4 C -0.17 -1.99 9.96 -39.50 -0.39 -2.39 16 5 C -0.02 -0.24 8.56 -39.23 -0.34 -0.58 16 6 C -0.19 -3.13 5.52 -104.90 -0.58 -3.71 16 7 C 0.58 11.36 7.33 -12.51 -0.09 11.27 16 8 O -0.54 -12.43 16.66 5.28 0.09 -12.34 16 9 N -0.60 -11.33 3.01 -156.47 -0.47 -11.80 16 10 C 0.08 1.36 5.36 -0.61 0.00 1.36 16 11 C 0.14 2.52 5.53 -62.55 -0.35 2.18 16 12 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 13 C -0.15 -2.52 6.82 -22.30 -0.15 -2.68 16 14 C 0.10 1.90 5.20 -62.54 -0.33 1.58 16 15 H 0.11 2.17 8.04 -51.93 -0.42 1.75 16 16 C 0.17 4.10 4.76 -1.67 -0.01 4.09 16 17 N -0.60 -13.91 3.02 -156.34 -0.47 -14.38 16 18 C -0.23 -6.03 10.37 -15.06 -0.16 -6.19 16 19 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 20 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -26.26 10.56 55.49 0.59 -25.68 16 22 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 C 0.19 2.83 7.24 -38.99 -0.28 2.54 16 27 F -0.12 -2.00 16.28 2.25 0.04 -1.97 16 28 C -0.26 -3.06 8.99 -39.43 -0.35 -3.42 16 29 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 30 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.15 2.25 5.86 -52.48 -0.31 1.94 16 34 H 0.08 1.29 5.86 -51.93 -0.30 0.99 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 1.29 7.67 -51.93 -0.40 0.89 16 39 H 0.06 1.48 7.46 -51.93 -0.39 1.09 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.14 1.32 6.27 -52.49 -0.33 0.99 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -32.27 339.89 -7.75 -40.02 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.02 Total: 1.38 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -2.39 Total: 6.71 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.36 Total: -51.85 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.11 Total: -15.65 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.27 -7.75 -40.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032502218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.290 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds