Wall clock time and date at job start Tue Mar 31 2020 13:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35712 * 116.99831 * 2 1 4 4 C 1.39101 * 119.88753 * 179.97438 * 3 2 1 5 5 C 1.37598 * 120.16280 * 180.02562 * 4 3 2 6 6 C 1.39815 * 119.93450 * 0.02562 * 5 4 3 7 7 C 1.47451 * 120.11569 * 179.97438 * 6 5 4 8 8 O 1.21599 * 120.00494 * 139.01852 * 7 6 5 9 9 N 1.34777 * 119.99529 * 319.02721 * 7 6 5 10 10 C 1.49761 * 127.90721 * 355.01719 * 9 7 6 11 11 C 1.56017 * 105.32068 * 181.26290 * 10 9 7 12 12 H 1.08998 * 116.25270 * 160.01254 * 11 10 9 13 13 C 1.57084 * 99.60688 * 33.13271 * 11 10 9 14 14 C 1.49294 * 126.94220 * 174.74379 * 9 7 6 15 15 H 1.09003 * 116.15434 * 16.69242 * 14 9 7 16 16 C 1.56028 * 104.08763 * 247.55549 * 14 9 7 17 17 N 1.47870 * 105.10209 * 287.91795 * 16 14 9 18 18 C 1.36938 * 126.94289 * 182.03970 * 17 16 14 19 19 H 1.07998 * 119.99815 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00174 * 359.97438 * 18 17 16 21 21 N 1.31627 * 119.99746 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00071 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47163 * 60.00468 * 22 20 18 24 24 H 1.48503 * 109.47194 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47447 * 300.00111 * 22 20 18 26 26 C 1.39988 * 119.77915 * 0.26741 * 6 5 4 27 27 F 1.35101 * 120.08347 * 179.72525 * 26 6 5 28 28 C 1.38065 * 119.83518 * 359.45368 * 26 6 5 29 29 H 1.09004 * 109.47535 * 300.00428 * 1 2 3 30 30 H 1.09006 * 109.47711 * 60.00274 * 1 2 3 31 31 H 1.09007 * 109.47454 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.91799 * 0.04792 * 4 3 2 33 33 H 1.08003 * 120.03595 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.93350 * 62.43002 * 10 9 7 35 35 H 1.08998 * 110.57370 * 300.42452 * 10 9 7 36 36 H 1.09001 * 112.36970 * 191.71748 * 13 11 10 37 37 H 1.08998 * 112.37019 * 64.27592 * 13 11 10 38 38 H 1.08993 * 110.31629 * 46.82332 * 16 14 9 39 39 H 1.08996 * 110.31211 * 168.91547 * 16 14 9 40 40 H 0.96996 * 119.99508 * 179.97438 * 21 20 18 41 41 H 1.08001 * 119.96546 * 180.29876 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4343 1.2793 0.0005 5 6 4.0648 2.5023 0.0011 6 6 3.3076 3.6777 0.0016 7 6 3.9791 4.9904 0.0028 8 8 3.5486 5.8943 -0.6874 9 7 5.0703 5.1884 0.7687 10 6 5.6864 4.2438 1.7541 11 6 6.8987 5.0153 2.3620 12 1 7.2717 4.6501 3.3189 13 6 6.3239 6.4767 2.3264 14 6 5.9301 6.4082 0.8073 15 1 5.5014 7.3122 0.3745 16 6 7.2899 5.9337 0.2070 17 7 7.8901 5.0710 1.2472 18 6 9.1094 4.4495 1.1982 19 1 9.4391 3.8413 2.0275 20 6 9.9214 4.6013 0.0827 21 7 9.5193 5.3422 -0.9282 22 14 11.5842 3.7530 0.0156 23 1 11.3953 2.2840 0.1245 24 1 12.2514 4.0725 -1.2721 25 1 12.4283 4.2283 1.1411 26 6 1.9096 3.6041 0.0073 27 9 1.1720 4.7359 0.0134 28 6 1.2866 2.3721 0.0009 29 1 -0.3634 0.5139 0.8899 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0195 0.3716 0.0002 33 1 5.1436 2.5544 0.0011 34 1 6.0285 3.3441 1.2427 35 1 4.9718 3.9857 2.5356 36 1 7.0886 7.2281 2.5232 37 1 5.4560 6.5971 2.9748 38 1 7.1218 5.3636 -0.7066 39 1 7.9337 6.7897 0.0053 40 1 10.0869 5.4485 -1.7075 41 1 0.2082 2.3129 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032502218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:12 Heat of formation + Delta-G solvation = -39.988365 kcal Electronic energy + Delta-G solvation = -27324.852938 eV Core-core repulsion = 23314.168404 eV Total energy + Delta-G solvation = -4010.684535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.11656 -41.74467 -41.03233 -39.50395 -38.01825 -35.41756 -33.44579 -31.99797 -31.68985 -30.40184 -30.21720 -28.35411 -26.98208 -25.65898 -24.25220 -23.78893 -22.21954 -21.41045 -20.36716 -19.56780 -19.07970 -18.22077 -18.03485 -17.45318 -17.16775 -16.91311 -16.75381 -16.45182 -16.09998 -15.81733 -15.63955 -15.34745 -15.08097 -14.68485 -14.32928 -13.87944 -13.70531 -13.55092 -13.44617 -13.32721 -13.08392 -12.84664 -12.76708 -12.64365 -12.34744 -12.26322 -12.16171 -12.07402 -11.99782 -11.82028 -11.50678 -11.13147 -10.69973 -10.15380 -9.67177 -9.38657 -8.89905 -7.81680 -5.17789 -0.28956 -0.01269 1.50026 1.52451 1.58570 1.60402 1.84669 2.13462 2.44207 2.51138 2.99140 3.28700 3.36653 3.44993 3.54889 3.75682 3.78736 3.88874 3.99473 4.03538 4.20153 4.32452 4.34480 4.40058 4.53614 4.62466 4.67599 4.77469 4.83698 4.87760 4.94171 4.95140 5.00849 5.07607 5.13400 5.23634 5.42065 5.46642 5.53032 5.67256 6.11152 6.18525 6.54193 7.02272 7.04865 7.73182 8.43674 9.29315 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.003832 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.119630 B = 7306.072778 C = 8322.493157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.312 6.312 3 C 0.186 3.814 4 C -0.159 4.159 5 C -0.017 4.017 6 C -0.216 4.216 7 C 0.571 3.429 8 O -0.589 6.589 9 N -0.604 5.604 10 C 0.088 3.912 11 C 0.138 3.862 12 H 0.141 0.859 13 C -0.129 4.129 14 C 0.097 3.903 15 H 0.109 0.891 16 C 0.189 3.811 17 N -0.614 5.614 18 C -0.229 4.229 19 H 0.098 0.902 20 C -0.070 4.070 21 N -0.957 5.957 22 Si 0.977 3.023 23 H -0.274 1.274 24 H -0.305 1.305 25 H -0.275 1.275 26 C 0.172 3.828 27 F -0.135 7.135 28 C -0.244 4.244 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.165 0.835 33 H 0.143 0.857 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.099 0.901 38 H -0.001 1.001 39 H 0.019 0.981 40 H 0.243 0.757 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 -10.983 7.921 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.225 6.225 3 C 0.138 3.862 4 C -0.177 4.177 5 C -0.036 4.036 6 C -0.220 4.220 7 C 0.361 3.639 8 O -0.471 6.471 9 N -0.336 5.336 10 C -0.035 4.035 11 C 0.031 3.969 12 H 0.158 0.842 13 C -0.168 4.168 14 C -0.006 4.006 15 H 0.127 0.873 16 C 0.063 3.937 17 N -0.339 5.339 18 C -0.358 4.358 19 H 0.116 0.884 20 C -0.262 4.262 21 N -0.607 5.607 22 Si 0.806 3.194 23 H -0.200 1.200 24 H -0.232 1.232 25 H -0.201 1.201 26 C 0.151 3.849 27 F -0.114 7.114 28 C -0.263 4.263 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.183 0.817 33 H 0.160 0.840 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.017 0.983 39 H 0.037 0.963 40 H 0.052 0.948 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.786 -10.745 7.376 22.050 hybrid contribution 0.826 0.508 -0.991 1.387 sum -16.960 -10.237 6.385 20.813 Atomic orbital electron populations 1.23543 0.75631 1.06412 1.02847 1.86099 1.24132 1.25148 1.87091 1.18933 0.91969 0.84171 0.91091 1.20623 0.91700 0.98783 1.06591 1.21148 1.00392 0.89766 0.92293 1.19804 0.92792 0.94119 1.15296 1.17997 0.79399 0.87559 0.78958 1.90742 1.66239 1.45758 1.44393 1.49585 1.25490 1.18508 1.40049 1.23782 0.96056 0.92519 0.91102 1.23601 0.86930 0.93690 0.92636 0.84182 1.24049 1.01172 0.98504 0.93064 1.24192 0.89133 0.88386 0.98918 0.87308 1.21507 0.89204 0.92808 0.90152 1.45484 1.16545 1.55939 1.15919 1.19509 0.92002 1.22590 1.01707 0.88418 1.25648 1.02419 1.01520 0.96651 1.70159 1.38125 1.44649 1.07721 0.85170 0.79676 0.78410 0.76172 1.20027 1.23240 1.20104 1.17498 0.87161 0.82512 0.97693 1.91521 1.76537 1.50139 1.93155 1.21231 1.02641 0.89379 1.13052 0.90980 0.91374 0.85448 0.81697 0.83982 0.91367 0.88652 0.89763 0.88252 0.98277 0.96269 0.94780 0.80890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.80 113.37 1.11 1.19 16 2 O -0.31 -5.06 10.48 -90.33 -0.95 -6.01 16 3 C 0.19 3.70 6.69 22.62 0.15 3.86 16 4 C -0.16 -3.43 9.96 22.33 0.22 -3.20 16 5 C -0.02 -0.48 8.56 22.50 0.19 -0.29 16 6 C -0.22 -7.05 5.52 -20.04 -0.11 -7.16 16 7 C 0.57 23.04 7.33 86.67 0.64 23.68 16 8 O -0.59 -28.21 16.66 -4.03 -0.07 -28.28 16 9 N -0.60 -22.86 3.01 -767.20 -2.31 -25.17 16 10 C 0.09 2.79 5.36 86.79 0.47 3.25 16 11 C 0.14 4.65 5.53 46.93 0.26 4.91 16 12 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 13 C -0.13 -4.09 6.82 33.46 0.23 -3.86 16 14 C 0.10 3.87 5.20 46.93 0.24 4.11 16 15 H 0.11 4.40 8.04 -2.39 -0.02 4.38 16 16 C 0.19 9.43 4.76 87.17 0.41 9.84 16 17 N -0.61 -28.78 3.02 -648.53 -1.96 -30.73 16 18 C -0.23 -11.81 10.37 84.03 0.87 -10.94 16 19 H 0.10 4.59 7.83 -2.91 -0.02 4.57 16 20 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 21 N -0.96 -57.70 10.56 21.65 0.23 -57.47 16 22 Si 0.98 44.40 29.55 68.60 2.03 46.42 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.31 -14.49 7.11 99.48 0.71 -13.79 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 26 C 0.17 5.02 7.24 22.65 0.16 5.18 16 27 F -0.14 -4.47 16.28 44.97 0.73 -3.74 16 28 C -0.24 -5.11 8.99 22.37 0.20 -4.91 16 29 H 0.07 0.44 7.65 -2.39 -0.02 0.42 16 30 H 0.07 0.47 7.65 -2.38 -0.02 0.45 16 31 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.14 4.18 5.86 -2.91 -0.02 4.17 16 34 H 0.07 2.28 5.86 -2.39 -0.01 2.27 16 35 H 0.10 2.34 8.14 -2.39 -0.02 2.33 16 36 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.00 -0.06 7.67 -2.39 -0.02 -0.08 16 39 H 0.02 1.08 7.46 -2.39 -0.02 1.06 16 40 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.17 2.51 6.27 -2.91 -0.02 2.49 16 Total: -1.00 -74.91 339.89 4.29 -70.62 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.07 Total: 12.05 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 5.52 Total: 22.30 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.04 Total: -113.37 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -1.01 Total: -34.28 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.73 Total: -3.74 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -74.91 4.29 -70.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032502218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.628 kcal (2) G-P(sol) polarization free energy of solvation -74.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds