Wall clock time and date at job start Tue Mar 31 2020 13:26:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86802 * 119.99892 * 2 1
4 4 H 1.48502 * 109.47011 * 179.97438 * 3 2 1
5 5 H 1.48496 * 109.47225 * 299.99516 * 3 2 1
6 6 H 1.48502 * 109.47181 * 59.99992 * 3 2 1
7 7 C 1.38809 * 119.99754 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99594 * 180.02562 * 7 2 1
9 9 N 1.36933 * 120.00491 * 0.02562 * 7 2 1
10 10 C 1.47588 * 134.49029 * 359.97438 * 9 7 2
11 11 C 1.53947 * 86.11590 * 155.36252 * 10 9 7
12 12 C 1.47580 * 134.49629 * 180.02562 * 9 7 2
13 13 H 1.09006 * 113.87183 * 90.31999 * 12 9 7
14 14 C 1.52998 * 113.76882 * 318.93762 * 12 9 7
15 15 N 1.46503 * 109.47133 * 78.50105 * 14 12 9
16 16 C 1.34779 * 119.99998 * 179.97438 * 15 14 12
17 17 O 1.21635 * 119.99972 * 0.02562 * 16 15 14
18 18 C 1.47188 * 119.99948 * 180.02562 * 16 15 14
19 19 C 1.35624 * 123.19143 * 359.97438 * 18 16 15
20 20 S 1.70264 * 110.84664 * 180.02562 * 19 18 16
21 21 C 1.75594 * 92.62595 * 359.97438 * 20 19 18
22 22 C 1.34016 * 110.59565 * 0.02562 * 21 20 19
23 23 C 1.52016 * 123.46057 * 179.97438 * 22 21 20
24 24 C 1.53048 * 108.75383 * 342.85907 * 23 22 21
25 25 C 1.53166 * 109.20118 * 50.66975 * 24 23 22
26 26 C 1.51612 * 125.05299 * 179.97438 * 21 20 19
27 27 H 0.97000 * 119.99892 * 0.02562 * 1 2 3
28 28 H 1.08997 * 113.76862 * 41.06125 * 10 9 7
29 29 H 1.09001 * 113.86527 * 269.67869 * 10 9 7
30 30 H 1.08994 * 113.74303 * 269.26556 * 11 10 9
31 31 H 1.08999 * 113.83898 * 137.96155 * 11 10 9
32 32 H 1.09000 * 109.47232 * 318.51117 * 14 12 9
33 33 H 1.08997 * 109.47647 * 198.50658 * 14 12 9
34 34 H 0.97004 * 120.00039 * 0.02562 * 15 14 12
35 35 H 1.08002 * 124.57705 * 0.05751 * 19 18 16
36 36 H 1.09001 * 109.58971 * 223.08119 * 23 22 21
37 37 H 1.09000 * 109.58840 * 102.63788 * 23 22 21
38 38 H 1.08996 * 109.51869 * 290.74873 * 24 23 22
39 39 H 1.09002 * 109.51686 * 170.58397 * 24 23 22
40 40 H 1.09000 * 109.53916 * 49.49490 * 25 24 23
41 41 H 1.09002 * 109.54047 * 169.74625 * 25 24 23
42 42 H 1.09000 * 109.59063 * 43.66094 * 26 21 20
43 43 H 1.09005 * 109.59498 * 283.20956 * 26 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3464 0.0006
5 1 1.8915 2.3964 -1.2125
6 1 1.8914 2.3965 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 -0.1033 -2.7574 0.0005
11 6 0.3470 -4.0830 -0.6398
12 6 1.7201 -3.8101 0.0015
13 1 1.8319 -4.2363 0.9985
14 6 2.9030 -4.1225 -0.9172
15 7 4.1498 -3.7189 -0.2624
16 6 5.3294 -3.9002 -0.8888
17 8 5.3586 -4.3985 -1.9980
18 6 6.5820 -3.4952 -0.2306
19 6 6.6247 -2.9339 1.0033
20 16 8.2292 -2.5901 1.4574
21 6 8.8756 -3.2165 -0.0502
22 6 7.8868 -3.6583 -0.8397
23 6 8.1186 -4.2603 -2.2161
24 6 9.5247 -3.8824 -2.6880
25 6 10.5342 -4.2251 -1.5882
26 6 10.3459 -3.2555 -0.4178
27 1 -0.4850 0.8401 -0.0004
28 1 -0.7169 -2.1391 -0.6547
29 1 -0.5289 -2.8732 0.9973
30 1 0.3591 -4.0622 -1.7294
31 1 -0.1583 -4.9608 -0.2371
32 1 2.7906 -3.5752 -1.8531
33 1 2.9306 -5.1925 -1.1231
34 1 4.1265 -3.3219 0.6224
35 1 5.7579 -2.7327 1.6154
36 1 7.3806 -3.8678 -2.9157
37 1 8.0314 -5.3453 -2.1599
38 1 9.5634 -2.8135 -2.8976
39 1 9.7677 -4.4406 -3.5921
40 1 10.3681 -5.2467 -1.2464
41 1 11.5468 -4.1306 -1.9805
42 1 10.9276 -3.5984 0.4378
43 1 10.6759 -2.2589 -0.7112
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001038993807.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:26:13
Heat of formation + Delta-G solvation = 30.948488 kcal
Electronic energy + Delta-G solvation = -24583.216078 eV
Core-core repulsion = 21141.820772 eV
Total energy + Delta-G solvation = -3441.395306 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-39.89621 -38.51061 -37.72328 -35.00385 -34.01842 -32.19473 -30.85500 -29.46283
-27.98551 -27.51557 -24.60091 -23.39307 -23.38150 -22.42387 -21.53789 -19.83095
-19.06540 -18.27093 -17.67090 -16.92685 -16.37853 -15.46893 -15.29810 -14.87014
-14.55286 -14.44053 -14.19025 -13.94604 -13.79176 -13.42136 -13.31119 -13.02707
-12.81112 -12.68987 -12.24587 -11.90050 -11.58632 -11.50485 -11.43116 -11.12023
-11.03596 -10.97147 -10.80000 -10.75852 -10.53683 -10.44893 -10.01055 -9.75941
-9.62725 -9.31737 -8.81932 -8.70148 -8.57759 -8.26337 -6.91033 -5.78288
-3.10724 0.79987 1.48867 1.91380 2.03232 3.36197 3.42170 3.44282
3.52831 3.64873 4.41090 4.45050 4.68768 4.73507 4.85723 5.03686
5.10411 5.17459 5.28065 5.38257 5.41136 5.46328 5.50089 5.60471
5.65090 5.69960 5.79881 5.80367 5.90547 5.95312 6.06507 6.09029
6.19234 6.22061 6.31003 6.39449 6.57264 6.61021 6.70796 6.88888
7.23574 7.39701 7.58176 7.89715 7.96939 8.56333 9.02760 9.69482
10.57656 11.38462
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.014620 B = 0.003727 C = 0.003302
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1914.690961 B = 7511.945640 C = 8478.141749
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.006 4.006
3 Si 0.905 3.095
4 H -0.280 1.280
5 H -0.290 1.290
6 H -0.291 1.291
7 C -0.219 4.219
8 H 0.078 0.922
9 N -0.602 5.602
10 C 0.159 3.841
11 C -0.155 4.155
12 C 0.125 3.875
13 H 0.049 0.951
14 C 0.125 3.875
15 N -0.708 5.708
16 C 0.572 3.428
17 O -0.544 6.544
18 C -0.143 4.143
19 C -0.210 4.210
20 S 0.173 5.827
21 C -0.214 4.214
22 C -0.050 4.050
23 C -0.052 4.052
24 C -0.123 4.123
25 C -0.115 4.115
26 C -0.042 4.042
27 H 0.252 0.748
28 H 0.074 0.926
29 H 0.026 0.974
30 H 0.077 0.923
31 H 0.053 0.947
32 H 0.073 0.927
33 H 0.061 0.939
34 H 0.400 0.600
35 H 0.171 0.829
36 H 0.092 0.908
37 H 0.078 0.922
38 H 0.064 0.936
39 H 0.068 0.932
40 H 0.066 0.934
41 H 0.069 0.931
42 H 0.075 0.925
43 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.916 -9.427 1.168 20.279
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.203 4.203
3 Si 0.736 3.264
4 H -0.205 1.205
5 H -0.217 1.217
6 H -0.218 1.218
7 C -0.346 4.346
8 H 0.096 0.904
9 N -0.329 5.329
10 C 0.034 3.966
11 C -0.194 4.194
12 C 0.017 3.983
13 H 0.066 0.934
14 C 0.000 4.000
15 N -0.358 5.358
16 C 0.357 3.643
17 O -0.423 6.423
18 C -0.161 4.161
19 C -0.348 4.348
20 S 0.442 5.558
21 C -0.330 4.330
22 C -0.061 4.061
23 C -0.091 4.091
24 C -0.160 4.160
25 C -0.154 4.154
26 C -0.081 4.081
27 H 0.063 0.937
28 H 0.092 0.908
29 H 0.044 0.956
30 H 0.095 0.905
31 H 0.072 0.928
32 H 0.092 0.908
33 H 0.079 0.921
34 H 0.235 0.765
35 H 0.189 0.811
36 H 0.110 0.890
37 H 0.096 0.904
38 H 0.083 0.917
39 H 0.087 0.913
40 H 0.085 0.915
41 H 0.087 0.913
42 H 0.093 0.907
43 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 18.564 -8.756 1.714 20.597
hybrid contribution -0.535 0.730 -0.422 0.998
sum 18.029 -8.027 1.292 19.778
Atomic orbital electron populations
1.69827 1.04946 1.25129 1.56697 1.24746 0.95606 0.97372 1.02578
0.86146 0.78795 0.84133 0.77322 1.20537 1.21665 1.21768 1.18977
0.90139 0.81922 1.43593 0.90401 1.46082 1.02300 0.98549 1.85932
1.22196 0.87925 0.89627 0.96893 1.23774 0.96079 0.98957 1.00602
1.22519 0.92408 0.87693 0.95634 0.93381 1.21771 0.82077 0.98758
0.97362 1.45844 1.05949 1.62764 1.21232 1.17584 0.82871 0.78660
0.85218 1.90725 1.87291 1.44983 1.19349 1.20212 0.94470 1.06392
0.94988 1.25478 1.03562 1.05214 1.00570 1.82798 0.95934 1.59843
1.17210 1.24646 0.99663 1.10040 0.98670 1.20393 0.89258 0.99267
0.97182 1.20517 0.96770 1.00315 0.91542 1.21639 0.94600 1.01804
0.97986 1.21586 0.99249 0.99323 0.95279 1.20282 0.88674 1.00561
0.98592 0.93740 0.90810 0.95591 0.90469 0.92797 0.90841 0.92061
0.76545 0.81146 0.88986 0.90409 0.91691 0.91297 0.91475 0.91281
0.90671 0.90393
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.95 11.38 55.49 0.63 -26.32 16
2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16
3 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16
4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
7 C -0.22 -5.88 10.51 -15.06 -0.16 -6.04 16
8 H 0.08 2.03 7.80 -52.48 -0.41 1.63 16
9 N -0.60 -14.66 3.57 -170.71 -0.61 -15.27 16
10 C 0.16 3.64 7.51 -2.97 -0.02 3.61 16
11 C -0.16 -2.83 7.86 -25.78 -0.20 -3.03 16
12 C 0.13 2.41 4.33 -66.85 -0.29 2.12 16
13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
14 C 0.12 2.29 5.54 -4.04 -0.02 2.26 16
15 N -0.71 -12.42 5.49 -61.46 -0.34 -12.76 16
16 C 0.57 10.27 7.79 -12.62 -0.10 10.17 16
17 O -0.54 -10.95 14.61 5.25 0.08 -10.88 16
18 C -0.14 -2.22 5.97 -104.56 -0.62 -2.84 16
19 C -0.21 -2.83 10.35 29.80 0.31 -2.52 16
20 S 0.17 1.93 22.99 -107.50 -2.47 -0.54 16
21 C -0.21 -2.53 6.32 -35.34 -0.22 -2.75 16
22 C -0.05 -0.70 5.95 -102.82 -0.61 -1.31 16
23 C -0.05 -0.68 5.07 -27.21 -0.14 -0.82 16
24 C -0.12 -1.20 5.90 -26.62 -0.16 -1.36 16
25 C -0.12 -0.95 5.93 -26.57 -0.16 -1.11 16
26 C -0.04 -0.37 6.26 -27.36 -0.17 -0.54 16
27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16
28 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16
29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16
31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
32 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16
33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
34 H 0.40 6.62 6.94 -40.82 -0.28 6.34 16
35 H 0.17 2.10 6.97 -52.49 -0.37 1.73 16
36 H 0.09 1.39 6.94 -51.93 -0.36 1.03 16
37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
38 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16
39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16
41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16
42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
LS Contribution 359.57 15.07 5.42 5.42
Total: -1.00 -31.72 359.57 -11.40 -43.12
By element:
Atomic # 1 Polarization: 10.95 SS G_CDS: -6.41 Total: 4.53 kcal
Atomic # 6 Polarization: -1.79 SS G_CDS: -2.66 Total: -4.45 kcal
Atomic # 7 Polarization: -54.03 SS G_CDS: -0.32 Total: -54.35 kcal
Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.88 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal
Atomic # 16 Polarization: 1.93 SS G_CDS: -2.47 Total: -0.54 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -31.72 -11.40 -43.12 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001038993807.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.069 kcal
(2) G-P(sol) polarization free energy of solvation -31.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.344 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.396 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds