Wall clock time and date at job start Tue Mar 31 2020 13:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86795 * 120.00191 * 2 1 4 4 H 1.48499 * 109.46998 * 269.99678 * 3 2 1 5 5 H 1.48498 * 109.47377 * 29.99786 * 3 2 1 6 6 H 1.48502 * 109.47203 * 150.00004 * 3 2 1 7 7 C 1.38655 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00254 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.35746 * 116.99856 * 185.05633 * 9 7 2 11 11 C 1.38876 * 120.07131 * 354.46695 * 10 9 7 12 12 C 1.38103 * 119.93550 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06571 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.93270 * 179.97438 * 13 12 11 15 15 N 1.46493 * 109.47027 * 90.00072 * 14 13 12 16 16 C 1.34777 * 119.99828 * 180.02562 * 15 14 13 17 17 S 1.71198 * 120.00289 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99980 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00213 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47279 * 180.02562 * 19 18 16 21 21 C 1.53783 * 113.61067 * 85.86894 * 20 19 18 22 22 C 1.54057 * 86.98427 * 140.02094 * 21 20 19 23 23 C 1.53782 * 87.07643 * 334.56598 * 22 21 20 24 24 C 1.38305 * 120.14042 * 0.25326 * 13 12 11 25 25 C 1.38108 * 120.06574 * 359.44804 * 24 13 12 26 26 H 0.97000 * 119.99533 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.03350 * 0.02562 * 11 10 9 28 28 H 1.07999 * 119.96960 * 180.02562 * 12 11 10 29 29 H 1.09008 * 109.46866 * 330.00310 * 14 13 12 30 30 H 1.09001 * 109.47468 * 210.00546 * 14 13 12 31 31 H 0.97003 * 120.00531 * 359.97438 * 15 14 13 32 32 H 0.97001 * 120.00175 * 0.02562 * 18 16 15 33 33 H 1.09004 * 109.46735 * 60.00083 * 19 18 16 34 34 H 1.08999 * 109.47156 * 300.00760 * 19 18 16 35 35 H 1.08997 * 112.85162 * 314.66869 * 20 19 18 36 36 H 1.09002 * 113.61042 * 254.60909 * 21 20 19 37 37 H 1.08997 * 113.61799 * 25.51728 * 21 20 19 38 38 H 1.08998 * 113.61331 * 220.02287 * 22 21 20 39 39 H 1.08994 * 113.61353 * 89.11676 * 22 21 20 40 40 H 1.09000 * 113.61326 * 270.88406 * 23 22 21 41 41 H 1.08994 * 113.69102 * 139.99113 * 23 22 21 42 42 H 1.07990 * 119.96757 * 179.70199 * 24 13 12 43 43 H 1.07995 * 120.03609 * 180.27683 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0016 10 6 2.0698 -3.5045 0.1087 11 6 3.4570 -3.4396 0.0952 12 6 4.2023 -4.5972 0.2037 13 6 3.5685 -5.8204 0.3253 14 6 4.3846 -7.0818 0.4430 15 7 4.6562 -7.3576 1.8559 16 6 5.3755 -8.4427 2.2045 17 16 5.9725 -9.4984 0.9962 18 7 5.6259 -8.6962 3.5044 19 6 6.4073 -9.8760 3.8834 20 6 6.5439 -9.9296 5.4063 21 6 5.3633 -10.6228 6.1066 22 6 6.4028 -11.2673 7.0432 23 6 7.4220 -11.0892 5.9056 24 6 2.1871 -5.8891 0.3333 25 6 1.4364 -4.7344 0.2313 26 1 -0.4849 0.8401 -0.0004 27 1 3.9525 -2.4847 -0.0002 28 1 5.2810 -4.5472 0.1937 29 1 5.3270 -6.9559 -0.0903 30 1 3.8307 -7.9148 0.0102 31 1 4.3190 -6.7588 2.5406 32 1 5.2880 -8.0978 4.1890 33 1 7.3974 -9.8166 3.4312 34 1 5.9011 -10.7752 3.5324 35 1 6.8050 -8.9653 5.8421 36 1 4.6881 -9.9316 6.6112 37 1 4.8409 -11.3406 5.4743 38 1 6.1903 -12.3099 7.2797 39 1 6.6251 -10.6687 7.9265 40 1 7.4614 -11.9343 5.2184 41 1 8.4083 -10.7745 6.2465 42 1 1.6952 -6.8462 0.4235 43 1 0.3578 -4.7882 0.2420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115966233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:00 Heat of formation + Delta-G solvation = 24.318546 kcal Electronic energy + Delta-G solvation = -22882.412542 eV Core-core repulsion = 19440.729740 eV Total energy + Delta-G solvation = -3441.682802 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.85298 -39.33799 -38.41431 -36.86898 -34.95407 -32.47471 -30.55568 -30.32732 -28.49662 -26.12294 -25.92614 -24.81757 -23.60718 -23.15332 -22.14929 -20.82096 -19.99387 -18.45903 -18.14673 -17.49338 -16.99383 -16.10758 -15.51438 -15.42185 -14.89415 -14.74059 -14.62560 -14.59347 -14.21000 -13.90456 -13.75834 -13.44046 -12.91146 -12.87824 -12.69265 -12.45078 -12.31475 -11.83029 -11.46587 -11.40558 -11.15210 -11.07375 -11.00644 -10.90133 -10.82328 -10.77925 -10.65653 -10.54814 -9.51057 -9.12577 -8.99292 -8.38304 -7.86326 -7.54981 -7.33488 -6.60303 -4.19241 1.43794 1.79053 2.04127 2.10232 2.66943 3.03839 3.04629 3.09550 3.54076 3.84238 4.09431 4.15161 4.21482 4.38755 4.41437 4.73591 4.94237 4.99817 5.03062 5.11279 5.24758 5.29087 5.34005 5.35822 5.46306 5.49320 5.54374 5.57661 5.70963 5.72242 5.79927 5.90315 6.02104 6.03449 6.25903 6.42245 6.50467 6.70979 6.76898 6.87339 7.04851 7.17029 7.26700 7.27806 7.61966 7.84118 8.84766 9.51741 10.56869 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.002081 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.583573 B =13450.712622 C =14032.919574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.162 3.838 11 C -0.238 4.238 12 C -0.047 4.047 13 C -0.224 4.224 14 C 0.184 3.816 15 N -0.671 5.671 16 C 0.561 3.439 17 S -0.661 6.661 18 N -0.690 5.690 19 C 0.137 3.863 20 C -0.130 4.130 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.128 4.128 24 C -0.051 4.051 25 C -0.196 4.196 26 H 0.272 0.728 27 H 0.129 0.871 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.398 0.602 32 H 0.396 0.604 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.929 -16.039 12.723 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.107 3.893 11 C -0.257 4.257 12 C -0.066 4.066 13 C -0.225 4.225 14 C 0.062 3.938 15 N -0.299 5.299 16 C 0.199 3.801 17 S -0.538 6.538 18 N -0.321 5.321 19 C 0.014 3.986 20 C -0.149 4.149 21 C -0.176 4.176 22 C -0.180 4.180 23 C -0.166 4.166 24 C -0.070 4.070 25 C -0.215 4.215 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.235 0.765 32 H 0.232 0.768 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.902 -16.559 11.790 23.067 hybrid contribution -0.175 2.062 1.221 2.403 sum 10.727 -14.497 13.011 22.238 Atomic orbital electron populations 1.70039 1.06027 1.27997 1.45022 1.25344 0.95889 0.99008 0.96236 0.85679 0.78905 0.79795 0.78892 1.19699 1.20133 1.19126 1.21372 0.91899 0.80663 1.53096 0.88849 1.83978 1.34573 1.11617 1.77105 1.19454 0.90324 0.88056 0.91444 1.21163 0.93767 0.98992 1.11804 1.20668 0.98438 0.91598 0.95930 1.19200 0.93557 0.93450 1.16340 1.20394 1.00014 0.95515 0.77829 1.45625 1.50058 1.22771 1.11471 1.22206 0.82681 0.86907 0.88307 1.93433 1.68098 1.49135 1.43106 1.44988 1.54434 1.28532 1.04134 1.21715 0.96703 0.86877 0.93327 1.22894 0.98534 0.99531 0.93892 1.23084 0.96137 0.99870 0.98554 1.22855 0.96747 1.01340 0.97101 1.22847 0.97827 0.97885 0.98007 1.20555 0.92724 0.96883 0.96855 1.20228 0.99742 0.90215 1.11354 0.91780 0.85340 0.87305 0.89620 0.89578 0.76541 0.76815 0.89653 0.89587 0.88722 0.91442 0.89626 0.91183 0.90160 0.89388 0.91055 0.86866 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.19 13.67 55.48 0.76 -23.43 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.39 -10.50 9.49 30.89 0.29 -10.21 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 9 O -0.17 -4.63 9.76 0.05 0.00 -4.63 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 C -0.24 -4.76 9.17 -39.39 -0.36 -5.13 16 12 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 13 C -0.22 -3.38 5.25 -104.57 -0.55 -3.93 16 14 C 0.18 2.42 5.25 -5.20 -0.03 2.40 16 15 N -0.67 -7.50 5.55 -63.22 -0.35 -7.85 16 16 C 0.56 6.65 7.98 -86.92 -0.69 5.96 16 17 S -0.66 -10.70 27.77 -107.50 -2.99 -13.68 16 18 N -0.69 -5.77 5.56 -62.03 -0.34 -6.12 16 19 C 0.14 1.07 4.95 -4.04 -0.02 1.05 16 20 C -0.13 -0.70 3.75 -89.80 -0.34 -1.04 16 21 C -0.14 -0.74 7.65 -25.77 -0.20 -0.94 16 22 C -0.14 -0.69 8.09 -25.77 -0.21 -0.90 16 23 C -0.13 -0.64 7.64 -25.92 -0.20 -0.84 16 24 C -0.05 -0.82 9.69 -39.60 -0.38 -1.21 16 25 C -0.20 -3.81 9.99 -39.39 -0.39 -4.21 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 28 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.09 1.20 7.93 -51.92 -0.41 0.79 16 30 H 0.09 1.19 7.93 -51.93 -0.41 0.78 16 31 H 0.40 3.79 8.48 -40.82 -0.35 3.44 16 32 H 0.40 2.35 8.49 -40.82 -0.35 2.01 16 33 H 0.09 0.78 7.99 -51.93 -0.41 0.37 16 34 H 0.09 0.78 7.72 -51.93 -0.40 0.38 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.50 7.92 -51.93 -0.41 0.09 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -31.48 372.53 -12.40 -43.87 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.25 Total: 7.38 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -3.82 Total: -15.78 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.06 Total: -37.40 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: 0.00 Total: -4.63 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -2.99 Total: -13.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.48 -12.40 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115966233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.193 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds