Wall clock time and date at job start Tue Mar 31 2020 13:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86795 * 120.00191 * 2 1 4 4 H 1.48499 * 109.46998 * 269.99678 * 3 2 1 5 5 H 1.48498 * 109.47377 * 29.99786 * 3 2 1 6 6 H 1.48502 * 109.47203 * 150.00004 * 3 2 1 7 7 C 1.38655 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00254 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.35746 * 116.99856 * 185.05633 * 9 7 2 11 11 C 1.38876 * 120.07131 * 354.46695 * 10 9 7 12 12 C 1.38103 * 119.93550 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06571 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.93270 * 179.97438 * 13 12 11 15 15 N 1.46493 * 109.47027 * 90.00072 * 14 13 12 16 16 C 1.34777 * 119.99828 * 180.02562 * 15 14 13 17 17 S 1.71198 * 120.00289 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99980 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00213 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47279 * 180.02562 * 19 18 16 21 21 C 1.53783 * 113.61067 * 85.86894 * 20 19 18 22 22 C 1.54057 * 86.98427 * 140.02094 * 21 20 19 23 23 C 1.53782 * 87.07643 * 334.56598 * 22 21 20 24 24 C 1.38305 * 120.14042 * 0.25326 * 13 12 11 25 25 C 1.38108 * 120.06574 * 359.44804 * 24 13 12 26 26 H 0.97000 * 119.99533 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.03350 * 0.02562 * 11 10 9 28 28 H 1.07999 * 119.96960 * 180.02562 * 12 11 10 29 29 H 1.09008 * 109.46866 * 330.00310 * 14 13 12 30 30 H 1.09001 * 109.47468 * 210.00546 * 14 13 12 31 31 H 0.97003 * 120.00531 * 359.97438 * 15 14 13 32 32 H 0.97001 * 120.00175 * 0.02562 * 18 16 15 33 33 H 1.09004 * 109.46735 * 60.00083 * 19 18 16 34 34 H 1.08999 * 109.47156 * 300.00760 * 19 18 16 35 35 H 1.08997 * 112.85162 * 314.66869 * 20 19 18 36 36 H 1.09002 * 113.61042 * 254.60909 * 21 20 19 37 37 H 1.08997 * 113.61799 * 25.51728 * 21 20 19 38 38 H 1.08998 * 113.61331 * 220.02287 * 22 21 20 39 39 H 1.08994 * 113.61353 * 89.11676 * 22 21 20 40 40 H 1.09000 * 113.61326 * 270.88406 * 23 22 21 41 41 H 1.08994 * 113.69102 * 139.99113 * 23 22 21 42 42 H 1.07990 * 119.96757 * 179.70199 * 24 13 12 43 43 H 1.07995 * 120.03609 * 180.27683 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0016 10 6 2.0698 -3.5045 0.1087 11 6 3.4570 -3.4396 0.0952 12 6 4.2023 -4.5972 0.2037 13 6 3.5685 -5.8204 0.3253 14 6 4.3846 -7.0818 0.4430 15 7 4.6562 -7.3576 1.8559 16 6 5.3755 -8.4427 2.2045 17 16 5.9725 -9.4984 0.9962 18 7 5.6259 -8.6962 3.5044 19 6 6.4073 -9.8760 3.8834 20 6 6.5439 -9.9296 5.4063 21 6 5.3633 -10.6228 6.1066 22 6 6.4028 -11.2673 7.0432 23 6 7.4220 -11.0892 5.9056 24 6 2.1871 -5.8891 0.3333 25 6 1.4364 -4.7344 0.2313 26 1 -0.4849 0.8401 -0.0004 27 1 3.9525 -2.4847 -0.0002 28 1 5.2810 -4.5472 0.1937 29 1 5.3270 -6.9559 -0.0903 30 1 3.8307 -7.9148 0.0102 31 1 4.3190 -6.7588 2.5406 32 1 5.2880 -8.0978 4.1890 33 1 7.3974 -9.8166 3.4312 34 1 5.9011 -10.7752 3.5324 35 1 6.8050 -8.9653 5.8421 36 1 4.6881 -9.9316 6.6112 37 1 4.8409 -11.3406 5.4743 38 1 6.1903 -12.3099 7.2797 39 1 6.6251 -10.6687 7.9265 40 1 7.4614 -11.9343 5.2184 41 1 8.4083 -10.7745 6.2465 42 1 1.6952 -6.8462 0.4235 43 1 0.3578 -4.7882 0.2420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115966233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:59 Heat of formation + Delta-G solvation = 6.096480 kcal Electronic energy + Delta-G solvation = -22883.202710 eV Core-core repulsion = 19440.729740 eV Total energy + Delta-G solvation = -3442.472970 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97816 -40.41755 -39.40128 -38.28404 -35.98181 -34.32454 -31.93259 -31.74345 -29.35300 -27.63423 -26.52896 -26.17167 -24.59583 -23.76896 -23.68410 -22.27733 -20.50801 -19.91484 -19.34324 -18.86775 -18.27711 -16.77084 -16.60104 -16.52505 -16.29494 -16.01546 -15.70840 -15.62490 -15.44746 -15.16633 -15.09852 -14.69633 -14.42121 -14.03598 -13.59918 -13.32436 -13.12829 -13.04668 -12.88412 -12.57000 -12.44502 -12.35181 -12.19765 -12.17186 -12.13243 -11.51772 -11.25652 -11.23067 -11.13897 -10.83980 -10.01716 -9.84769 -9.11215 -9.06102 -8.67050 -8.50476 -6.18823 0.43140 0.43379 0.54543 0.95644 1.35091 1.42613 1.51853 1.67087 2.15375 2.58961 2.85509 3.15173 3.44792 3.63046 3.66701 3.77400 3.78968 3.98874 3.99619 4.14031 4.25048 4.41915 4.50200 4.53167 4.66303 4.72250 4.77553 4.85276 4.89622 4.90341 5.00363 5.02318 5.10327 5.11733 5.14006 5.22788 5.32103 5.44664 5.54590 5.60381 5.66044 5.69896 5.93052 5.98988 6.11980 6.41828 6.94273 7.72665 8.72016 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.002081 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.583573 B =13450.712622 C =14032.919574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.105 0.895 9 O -0.227 6.227 10 C 0.126 3.874 11 C -0.245 4.245 12 C -0.042 4.042 13 C -0.188 4.188 14 C 0.195 3.805 15 N -0.661 5.661 16 C 0.582 3.418 17 S -0.740 6.740 18 N -0.666 5.666 19 C 0.140 3.860 20 C -0.121 4.121 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.129 4.129 24 C -0.040 4.040 25 C -0.205 4.205 26 H 0.273 0.727 27 H 0.121 0.879 28 H 0.140 0.860 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.412 0.588 32 H 0.414 0.586 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.148 0.852 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.089 -17.278 14.452 26.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.133 6.133 10 C 0.074 3.926 11 C -0.264 4.264 12 C -0.060 4.060 13 C -0.189 4.189 14 C 0.072 3.928 15 N -0.290 5.290 16 C 0.216 3.784 17 S -0.618 6.618 18 N -0.296 5.296 19 C 0.017 3.983 20 C -0.139 4.139 21 C -0.177 4.177 22 C -0.178 4.178 23 C -0.167 4.167 24 C -0.058 4.058 25 C -0.225 4.225 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.158 0.842 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.251 0.749 32 H 0.253 0.747 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.166 0.834 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.097 -17.851 13.577 25.972 hybrid contribution -0.702 2.028 0.787 2.286 sum 12.396 -15.822 14.364 24.705 Atomic orbital electron populations 1.70180 1.08012 1.28903 1.48401 1.26589 0.96836 1.02781 0.95769 0.84595 0.77872 0.74608 0.79232 1.18955 1.19682 1.17511 1.21832 0.92584 0.81273 1.53253 0.87820 1.83951 1.36107 1.12713 1.80565 1.20014 0.91640 0.87959 0.92961 1.21248 0.92988 1.00125 1.12024 1.20957 0.99851 0.90670 0.94528 1.19446 0.93388 0.93866 1.12246 1.20197 0.99581 0.94085 0.78896 1.45225 1.49937 1.22792 1.11052 1.21639 0.82183 0.86024 0.88539 1.93672 1.70986 1.51738 1.45369 1.44976 1.52812 1.28525 1.03249 1.21745 0.95658 0.85936 0.94982 1.22876 0.98897 1.00348 0.91823 1.23081 0.96205 0.99866 0.98577 1.22861 0.96229 1.01580 0.97146 1.22872 0.98221 0.97579 0.98054 1.20895 0.93027 0.96998 0.94892 1.20459 1.00145 0.90377 1.11488 0.91770 0.86140 0.84243 0.89613 0.89392 0.74920 0.74676 0.90777 0.90764 0.87430 0.90872 0.90360 0.91081 0.89408 0.89783 0.90459 0.83444 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 13.67 21.61 0.30 -54.30 16 2 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 3 Si 1.02 41.19 29.55 68.60 2.03 43.22 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 7 C -0.41 -22.99 9.49 67.92 0.64 -22.34 16 8 H 0.10 5.24 5.20 -2.91 -0.02 5.23 16 9 O -0.23 -13.03 9.76 -22.74 -0.22 -13.25 16 10 C 0.13 5.78 6.65 22.58 0.15 5.93 16 11 C -0.24 -9.66 9.17 22.39 0.21 -9.46 16 12 C -0.04 -1.25 9.69 22.25 0.22 -1.03 16 13 C -0.19 -5.00 5.25 -19.83 -0.10 -5.10 16 14 C 0.20 4.37 5.25 85.63 0.45 4.82 16 15 N -0.66 -12.09 5.55 -353.91 -1.97 -14.05 16 16 C 0.58 11.98 7.98 179.05 1.43 13.41 16 17 S -0.74 -22.86 27.77 -56.49 -1.57 -24.43 16 18 N -0.67 -8.94 5.56 -350.16 -1.95 -10.88 16 19 C 0.14 1.87 4.95 86.38 0.43 2.30 16 20 C -0.12 -0.97 3.75 -10.27 -0.04 -1.01 16 21 C -0.14 -1.14 7.65 31.22 0.24 -0.90 16 22 C -0.14 -1.02 8.09 31.21 0.25 -0.77 16 23 C -0.13 -1.03 7.64 31.12 0.24 -0.79 16 24 C -0.04 -1.15 9.69 22.25 0.22 -0.94 16 25 C -0.21 -7.92 9.99 22.39 0.22 -7.69 16 26 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.12 4.90 5.64 -2.91 -0.02 4.89 16 28 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.09 2.06 7.93 -2.38 -0.02 2.05 16 30 H 0.09 2.08 7.93 -2.39 -0.02 2.06 16 31 H 0.41 5.86 8.48 -92.71 -0.79 5.08 16 32 H 0.41 3.13 8.49 -92.71 -0.79 2.35 16 33 H 0.07 1.24 7.99 -2.38 -0.02 1.22 16 34 H 0.07 1.24 7.72 -2.39 -0.02 1.22 16 35 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 0.77 7.92 -2.39 -0.02 0.75 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.08 0.74 8.10 -2.39 -0.02 0.72 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.15 3.36 8.06 -2.92 -0.02 3.34 16 43 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -73.71 372.53 1.10 -72.61 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.54 Total: 25.37 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 5.01 Total: -24.29 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -3.62 Total: -79.23 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.22 Total: -13.25 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: -22.86 SS G_CDS: -1.57 Total: -24.43 kcal Total: -73.71 1.10 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115966233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.710 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds