Wall clock time and date at job start Tue Mar 31 2020 13:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99897 * 2 1 4 4 C 1.53000 * 109.46943 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47553 * 65.00035 * 4 3 2 6 6 C 1.36775 * 120.00026 * 263.56149 * 5 4 3 7 7 H 1.07997 * 120.00445 * 138.20102 * 6 5 4 8 8 C 1.39119 * 120.00185 * 318.19941 * 6 5 4 9 9 N 1.31323 * 119.99531 * 344.79539 * 8 6 5 10 10 Si 1.86800 * 120.00060 * 164.79440 * 8 6 5 11 11 H 1.48499 * 109.46908 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46734 * 119.99890 * 10 8 6 13 13 H 1.48495 * 109.46927 * 239.99698 * 10 8 6 14 14 C 1.34778 * 119.99421 * 83.55953 * 5 4 3 15 15 O 1.21537 * 120.00606 * 6.16906 * 14 5 4 16 16 C 1.48192 * 119.99268 * 186.17072 * 14 5 4 17 17 C 1.41958 * 126.85034 * 174.57108 * 16 14 5 18 18 C 1.36692 * 103.82036 * 180.02562 * 17 16 14 19 19 C 1.47860 * 126.80689 * 180.02562 * 18 17 16 20 20 C 1.41042 * 126.06607 * 179.97438 * 19 18 17 21 21 C 1.35003 * 107.84565 * 179.97438 * 20 19 18 22 22 N 1.35088 * 108.03180 * 0.02562 * 21 20 19 23 23 C 1.46506 * 125.91244 * 180.02562 * 22 21 20 24 24 N 1.31814 * 126.06713 * 359.66577 * 19 18 17 25 25 O 1.34475 * 106.38920 * 0.02562 * 18 17 16 26 26 N 1.20879 * 111.75095 * 359.97438 * 25 18 17 27 27 H 1.08996 * 109.47180 * 299.99743 * 1 2 3 28 28 H 1.08996 * 109.47271 * 59.99564 * 1 2 3 29 29 H 1.09007 * 109.47205 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46684 * 60.00283 * 3 2 1 31 31 H 1.08995 * 109.47169 * 300.00225 * 3 2 1 32 32 H 1.09004 * 109.47401 * 304.99376 * 4 3 2 33 33 H 1.09006 * 109.46970 * 185.00352 * 4 3 2 34 34 H 0.97003 * 119.99458 * 180.02562 * 9 8 6 35 35 H 1.07999 * 128.08853 * 0.04218 * 17 16 14 36 36 H 1.08005 * 126.07715 * 359.96192 * 20 19 18 37 37 H 1.07992 * 125.98556 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.47035 * 89.99938 * 23 22 21 39 39 H 1.08997 * 109.46792 * 210.00174 * 23 22 21 40 40 H 1.08999 * 109.46547 * 329.99436 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2235 -0.7799 -1.2999 7 1 3.8963 -1.3599 -2.1501 8 6 4.8972 -1.4002 -0.2526 9 7 5.5525 -0.6771 0.6263 10 14 4.8696 -3.2614 -0.0965 11 1 4.0680 -3.8392 -1.2050 12 1 6.2577 -3.7845 -0.1652 13 1 4.2618 -3.6401 1.2044 14 6 4.1365 1.3186 -2.3581 15 8 4.0257 2.5270 -2.2908 16 6 4.4483 0.6742 -3.6557 17 6 4.5408 1.3100 -4.9215 18 6 4.8457 0.2892 -5.7781 19 6 5.0583 0.3913 -7.2377 20 6 5.3732 -0.6734 -8.1074 21 6 5.4847 -0.1696 -9.3549 22 7 5.2526 1.1597 -9.2913 23 6 5.2739 2.0909 -10.4221 24 7 4.9817 1.4926 -7.9580 25 8 4.9140 -0.8262 -5.0301 26 7 4.6930 -0.5977 -3.8638 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6885 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1766 0.0890 34 1 6.0225 -1.1097 1.3563 35 1 4.4029 2.3557 -5.1535 36 1 5.5024 -1.7080 -7.8255 37 1 5.7184 -0.7308 -10.2475 38 1 4.2774 2.1545 -10.8592 39 1 5.5820 3.0771 -10.0749 40 1 5.9782 1.7338 -11.1735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120656525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:30 Heat of formation + Delta-G solvation = 64.868212 kcal Electronic energy + Delta-G solvation = -26656.668522 eV Core-core repulsion = 22670.450871 eV Total energy + Delta-G solvation = -3986.217651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.94251 -42.08147 -40.58480 -38.60488 -36.76668 -35.20599 -34.69258 -33.63718 -32.46676 -31.10496 -30.96618 -27.62400 -27.33160 -26.95305 -25.59496 -24.18244 -23.57999 -22.24133 -21.75195 -20.80851 -19.31732 -18.78021 -18.18543 -18.03091 -17.35443 -17.17495 -16.91508 -16.39900 -16.35826 -16.16310 -15.83600 -15.48265 -15.16359 -14.86148 -14.62865 -14.57774 -13.70731 -13.69550 -13.67135 -13.43370 -13.23254 -13.07601 -13.00226 -12.80082 -12.57955 -12.16589 -12.06255 -11.82394 -11.77276 -11.43530 -11.29590 -11.17360 -10.76106 -10.54805 -9.99687 -9.52854 -9.44173 -8.33996 -6.07452 -0.10501 0.49081 1.10508 1.25069 1.43450 1.44724 1.58673 1.99197 2.15182 2.25569 2.37753 2.59100 2.95288 3.05775 3.30668 3.58011 3.70473 3.97592 4.14086 4.19066 4.25716 4.31031 4.44591 4.48742 4.50685 4.55805 4.58150 4.67641 4.71766 4.76250 4.80025 4.83031 4.91281 4.98497 5.25722 5.40786 5.55834 5.88311 6.10989 6.35567 6.42468 6.50793 7.00344 7.20989 7.43687 7.81203 8.71046 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.003562 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.553870 B = 7858.041495 C = 8726.423082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.063 3.937 4 C 0.115 3.885 5 N -0.411 5.411 6 C -0.328 4.328 7 H 0.101 0.899 8 C 0.010 3.990 9 N -0.893 5.893 10 Si 0.982 3.018 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.272 1.272 14 C 0.516 3.484 15 O -0.621 6.621 16 C -0.022 4.022 17 C -0.161 4.161 18 C 0.031 3.969 19 C 0.119 3.881 20 C -0.265 4.265 21 C 0.079 3.921 22 N -0.364 5.364 23 C 0.090 3.910 24 N -0.303 5.303 25 O 0.134 5.866 26 N -0.311 5.311 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.274 0.726 35 H 0.181 0.819 36 H 0.170 0.830 37 H 0.234 0.766 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 -0.848 -19.268 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.015 4.015 4 C -0.008 4.008 5 N -0.127 5.127 6 C -0.457 4.457 7 H 0.118 0.882 8 C -0.193 4.193 9 N -0.531 5.531 10 Si 0.805 3.195 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.197 1.197 14 C 0.305 3.695 15 O -0.509 6.509 16 C -0.178 4.178 17 C -0.186 4.186 18 C -0.034 4.034 19 C -0.044 4.044 20 C -0.294 4.294 21 C -0.066 4.066 22 N -0.148 5.148 23 C -0.049 4.049 24 N -0.131 5.131 25 O 0.056 5.944 26 N -0.010 5.010 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.198 0.802 36 H 0.187 0.813 37 H 0.251 0.749 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.797 -0.149 -18.272 18.486 hybrid contribution -0.028 -0.315 0.380 0.494 sum -2.825 -0.464 -17.893 18.121 Atomic orbital electron populations 1.22901 0.80420 1.03452 1.00346 1.88061 1.20690 1.27734 1.95347 1.22833 0.93837 0.84800 0.99982 1.21512 0.91831 0.98223 0.89203 1.43438 1.53655 1.08157 1.07450 1.19912 1.35453 0.82340 1.07959 0.88195 1.26189 0.93129 1.04317 0.95693 1.69945 1.29598 1.38039 1.15479 0.85052 0.78076 0.77712 0.78643 1.18625 1.20269 1.19722 1.17570 0.82473 0.85585 0.83867 1.90562 1.59883 1.14032 1.86391 1.23308 1.07326 0.90185 0.97013 1.22576 1.05067 1.01794 0.89157 1.21123 1.05013 0.85759 0.91462 1.18864 1.03854 0.93953 0.87683 1.21885 1.14621 1.00872 0.92002 1.23251 0.98771 0.84006 1.00604 1.48994 1.52041 1.08198 1.05584 1.22368 1.05489 0.92992 0.84094 1.77605 1.24435 1.21409 0.89660 1.84936 1.63845 1.32608 1.12989 1.74669 1.14422 1.17671 0.94236 0.92554 0.94437 0.88724 0.90453 0.95029 0.88330 0.91653 0.91677 0.80177 0.81267 0.74950 0.89014 0.89505 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -17.34 10.48 -148.98 -1.56 -18.91 16 3 C 0.06 2.70 6.23 71.98 0.45 3.15 16 4 C 0.12 5.87 5.28 86.38 0.46 6.33 16 5 N -0.41 -22.91 2.45 -638.45 -1.57 -24.48 16 6 C -0.33 -18.39 7.88 84.13 0.66 -17.73 16 7 H 0.10 5.68 5.81 -2.91 -0.02 5.67 16 8 C 0.01 0.53 5.01 84.98 0.43 0.96 16 9 N -0.89 -50.09 11.49 21.69 0.25 -49.84 16 10 Si 0.98 43.61 29.58 68.60 2.03 45.64 16 11 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 13 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 14 C 0.52 28.81 7.60 86.89 0.66 29.47 16 15 O -0.62 -35.88 16.60 -3.83 -0.06 -35.94 16 16 C -0.02 -1.10 6.90 42.81 0.30 -0.80 16 17 C -0.16 -6.85 10.95 22.83 0.25 -6.60 16 18 C 0.03 1.17 7.34 24.46 0.18 1.35 16 19 C 0.12 3.63 7.11 42.38 0.30 3.94 16 20 C -0.26 -5.83 10.77 22.21 0.24 -5.59 16 21 C 0.08 1.13 11.46 83.45 0.96 2.09 16 22 N -0.36 -6.62 4.01 -369.71 -1.48 -8.10 16 23 C 0.09 0.67 11.46 127.77 1.46 2.14 16 24 N -0.30 -8.79 12.60 -48.36 -0.61 -9.40 16 25 O 0.13 5.39 11.20 67.49 0.76 6.15 16 26 N -0.31 -14.96 8.90 -48.96 -0.44 -15.39 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 5.32 5.72 -2.38 -0.01 5.30 16 33 H 0.07 3.35 7.54 -2.38 -0.02 3.34 16 34 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.18 7.23 8.06 -2.91 -0.02 7.21 16 36 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.23 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 Total: -1.00 -79.27 354.32 5.98 -73.30 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.08 Total: 16.24 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 7.59 Total: 20.72 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -3.85 Total: -107.20 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -0.87 Total: -48.70 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -79.27 5.98 -73.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120656525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.164 kcal (2) G-P(sol) polarization free energy of solvation -79.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds