Wall clock time and date at job start Tue Mar 31 2020 13:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.20830 * 120.00352 * 0.02562 * 16 15 14 18 18 O 1.34232 * 120.00103 * 179.97438 * 16 15 14 19 19 C 1.45203 * 116.99836 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.46690 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.46814 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.46814 * 179.97438 * 21 20 19 23 23 O 1.43743 * 109.63089 * 294.36344 * 22 21 20 24 24 C 1.44784 * 104.81682 * 215.80781 * 23 22 21 25 25 C 1.54915 * 101.71761 * 36.10461 * 24 23 22 26 26 O 1.43365 * 109.62914 * 174.99583 * 22 21 20 27 27 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 28 28 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 32 32 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 33 33 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 34 34 H 1.09000 * 109.46840 * 299.99723 * 19 18 16 35 35 H 1.08994 * 109.47179 * 60.00517 * 19 18 16 36 36 H 1.09002 * 109.46966 * 299.99905 * 20 19 18 37 37 H 1.09000 * 109.46800 * 59.99840 * 20 19 18 38 38 H 1.09000 * 109.46736 * 299.99584 * 21 20 19 39 39 H 1.08994 * 109.47159 * 60.00301 * 21 20 19 40 40 H 1.09006 * 109.62484 * 54.60807 * 22 21 20 41 41 H 1.09000 * 110.97735 * 277.99995 * 24 23 22 42 42 H 1.08997 * 111.01689 * 154.22530 * 24 23 22 43 43 H 1.09008 * 110.69271 * 206.04269 * 25 24 23 44 44 H 1.08996 * 110.84529 * 82.90925 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3162 -3.6275 0.9029 18 8 5.3562 -3.8391 -1.0354 19 6 6.6215 -3.8004 -0.3242 20 6 7.7727 -3.9238 -1.3246 21 6 9.1060 -3.8836 -0.5752 22 6 10.2571 -4.0076 -1.5754 23 8 10.2233 -5.3056 -2.1921 24 6 11.6138 -5.6660 -2.3728 25 6 12.2627 -5.0640 -1.1014 26 8 11.5078 -3.8534 -0.8919 27 1 -0.4849 -0.8357 -0.0852 28 1 0.0691 -1.3040 1.8430 29 1 -0.9698 -3.3393 2.7431 30 1 -0.2416 -5.5537 1.9556 31 1 1.5304 -5.7534 0.2610 32 1 2.7709 -4.7177 -1.4995 33 1 2.8121 -2.9465 -1.6708 34 1 6.7073 -2.8560 0.2133 35 1 6.6654 -4.6273 0.3845 36 1 7.6869 -4.8679 -1.8625 37 1 7.7285 -3.0966 -2.0331 38 1 9.1919 -2.9396 -0.0370 39 1 9.1498 -4.7110 0.1330 40 1 10.1611 -3.2380 -2.3414 41 1 12.0219 -5.2076 -3.2736 42 1 11.7369 -6.7487 -2.3984 43 1 13.3144 -4.8368 -1.2763 44 1 12.1518 -5.7389 -0.2527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123114693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:13 Heat of formation + Delta-G solvation = -194.438525 kcal Electronic energy + Delta-G solvation = -26088.068576 eV Core-core repulsion = 22161.854134 eV Total energy + Delta-G solvation = -3926.214442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54055 -41.30706 -39.66189 -37.68400 -36.05485 -35.77517 -35.39983 -33.69073 -31.18505 -31.11939 -29.21572 -28.03446 -26.84609 -24.48867 -23.90523 -22.87371 -22.70307 -22.33607 -21.27217 -19.63748 -18.65443 -18.26434 -17.87410 -17.67182 -17.27291 -16.97429 -16.68033 -16.26861 -15.97919 -15.75951 -15.49161 -15.21591 -14.70936 -14.43746 -14.27625 -13.97280 -13.87729 -13.76818 -13.67446 -13.58823 -13.17344 -13.01735 -12.89124 -12.64029 -12.47161 -12.39311 -12.26897 -12.04155 -11.98522 -11.54140 -11.48014 -11.44247 -11.24878 -11.19954 -10.86492 -10.66077 -9.50021 -9.47572 -9.10239 -6.44464 0.80031 0.96466 1.30541 1.47494 1.61908 1.76374 1.78969 2.30464 2.47106 2.68910 2.95716 3.52673 3.65019 3.75159 3.78735 3.91707 4.00853 4.04050 4.12773 4.21704 4.23399 4.24750 4.37793 4.44822 4.46921 4.53241 4.58124 4.63388 4.67938 4.75533 4.77745 4.90574 4.94756 5.04764 5.10025 5.16637 5.27879 5.44006 5.48441 5.76672 5.80900 5.93886 6.02272 6.03624 6.25158 6.41298 6.80497 6.87977 6.97142 8.05748 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.002601 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.458655 B =10762.080002 C =12076.262290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.006 3.994 3 Si 1.106 2.894 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.086 3.914 10 C -0.243 4.243 11 C -0.092 4.092 12 C -0.251 4.251 13 C -0.073 4.073 14 C -0.205 4.205 15 C -0.041 4.041 16 C 0.466 3.534 17 O -0.534 6.534 18 O -0.361 6.361 19 C 0.061 3.939 20 C -0.100 4.100 21 C -0.126 4.126 22 C 0.235 3.765 23 O -0.396 6.396 24 C 0.012 3.988 25 C 0.014 3.986 26 O -0.405 6.405 27 H 0.285 0.715 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.129 0.871 43 H 0.123 0.877 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.436 -8.741 -6.789 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.211 4.211 3 Si 0.924 3.076 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.084 3.916 10 C -0.263 4.263 11 C -0.110 4.110 12 C -0.269 4.269 13 C -0.091 4.091 14 C -0.207 4.207 15 C -0.078 4.078 16 C 0.310 3.690 17 O -0.422 6.422 18 O -0.279 6.279 19 C -0.012 4.012 20 C -0.138 4.138 21 C -0.163 4.163 22 C 0.140 3.860 23 O -0.317 6.317 24 C -0.064 4.064 25 C -0.062 4.062 26 O -0.327 6.327 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.130 0.870 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 21.106 -7.017 -6.321 23.122 hybrid contribution -0.054 -1.626 0.486 1.698 sum 21.052 -8.643 -5.834 23.493 Atomic orbital electron populations 1.70556 1.08816 1.33313 1.31154 1.28235 0.95732 1.07150 0.89971 0.83145 0.74992 0.70535 0.78940 1.19263 1.19858 1.17741 1.20572 1.02724 0.95065 1.38735 0.91492 1.17786 0.90896 0.93119 0.89814 1.21159 1.04894 0.97157 1.03049 1.20939 0.98475 0.93073 0.98491 1.20742 1.04320 0.96531 1.05356 1.20840 0.95539 0.97007 0.95762 1.19446 1.03620 0.93337 1.04279 1.19989 0.84739 1.05799 0.97301 1.24374 0.87108 0.71223 0.86302 1.90626 1.87963 1.45820 1.17806 1.86487 1.15335 1.83793 1.42248 1.23156 0.80435 1.02107 0.95542 1.21319 0.90436 1.04504 0.97511 1.21853 0.92119 1.04185 0.98188 1.24072 0.84790 0.86327 0.90837 1.89253 1.26770 1.34842 1.80831 1.24640 0.79618 1.03901 0.98246 1.24442 0.98060 0.85779 0.97904 1.88885 1.29212 1.38965 1.75608 0.90252 0.89633 0.86985 0.86018 0.85942 0.85614 0.87681 0.92054 0.91680 0.90046 0.89810 0.89159 0.90799 0.88707 0.89230 0.85354 0.85922 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.51 12.32 21.82 0.27 -44.24 16 2 C 0.01 0.30 4.94 85.25 0.42 0.73 16 3 Si 1.11 44.62 30.00 68.60 2.06 46.67 16 4 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.54 -29.43 8.08 23.46 0.19 -29.24 16 8 H 0.07 3.58 6.73 -2.91 -0.02 3.56 16 9 C 0.09 4.69 5.30 -21.29 -0.11 4.58 16 10 C -0.24 -13.10 7.95 22.73 0.18 -12.92 16 11 C -0.09 -4.34 10.02 22.22 0.22 -4.11 16 12 C -0.25 -10.95 10.05 22.46 0.23 -10.73 16 13 C -0.07 -3.21 9.66 22.22 0.21 -3.00 16 14 C -0.21 -9.80 4.43 -19.40 -0.09 -9.89 16 15 C -0.04 -1.64 5.29 29.10 0.15 -1.48 16 16 C 0.47 19.11 7.59 71.23 0.54 19.65 16 17 O -0.53 -25.88 15.78 21.95 0.35 -25.53 16 18 O -0.36 -12.42 10.22 -51.44 -0.53 -12.95 16 19 C 0.06 1.76 5.47 71.98 0.39 2.15 16 20 C -0.10 -2.15 5.50 30.60 0.17 -1.98 16 21 C -0.13 -2.38 5.30 30.60 0.16 -2.22 16 22 C 0.23 4.16 4.01 71.98 0.29 4.45 16 23 O -0.40 -7.12 10.92 -126.22 -1.38 -8.50 16 24 C 0.01 0.12 7.95 72.64 0.58 0.69 16 25 C 0.01 0.15 8.07 72.64 0.59 0.73 16 26 O -0.41 -7.37 11.22 -126.22 -1.42 -8.78 16 27 H 0.29 16.13 6.68 -92.71 -0.62 15.51 16 28 H 0.09 4.84 6.49 -2.91 -0.02 4.82 16 29 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 32 H 0.13 3.97 8.05 -2.39 -0.02 3.96 16 33 H 0.11 4.23 7.06 -2.39 -0.02 4.21 16 34 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 35 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 36 H 0.08 1.77 7.85 -2.39 -0.02 1.75 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -69.00 369.85 4.62 -64.37 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 1.14 Total: 31.53 kcal Atomic # 6 Polarization: -46.71 SS G_CDS: 4.13 Total: -42.58 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.27 Total: -44.24 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -2.97 Total: -55.76 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.06 Total: 46.67 kcal Total: -69.00 4.62 -64.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123114693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.067 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds