Wall clock time and date at job start Tue Mar 31 2020 13:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00186 * 2 1 4 4 H 1.48505 * 109.46953 * 240.00011 * 3 2 1 5 5 H 1.48502 * 109.46872 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47067 * 120.00342 * 3 2 1 7 7 C 1.38807 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99894 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99849 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47259 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99854 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00429 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00553 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47396 * 179.97438 * 14 13 11 16 16 N 1.46903 * 109.47062 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99877 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.47362 * 179.97438 * 17 16 15 19 19 C 1.32562 * 120.00458 * 127.11814 * 18 17 16 20 20 C 1.47820 * 119.99674 * 8.51103 * 19 18 17 21 21 C 1.39528 * 120.13759 * 37.97616 * 20 19 18 22 22 C 1.37975 * 119.85199 * 179.97438 * 21 20 19 23 23 C 1.38346 * 120.14515 * 359.97438 * 22 21 20 24 24 C 1.38343 * 120.28278 * 0.02562 * 23 22 21 25 25 C 1.37977 * 120.14270 * 0.02562 * 24 23 22 26 26 H 0.96996 * 119.99884 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47338 * 59.99506 * 10 9 7 28 28 H 1.09005 * 109.46708 * 299.99536 * 10 9 7 29 29 H 0.97007 * 119.99692 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47038 * 60.00256 * 14 13 11 31 31 H 1.08993 * 109.47234 * 300.00097 * 14 13 11 32 32 H 1.08999 * 109.47131 * 59.99879 * 15 14 13 33 33 H 1.09002 * 109.47323 * 300.00218 * 15 14 13 34 34 H 1.00893 * 110.99821 * 303.95194 * 16 15 14 35 35 H 1.09003 * 109.46744 * 59.99809 * 17 16 15 36 36 H 1.08996 * 109.47239 * 300.00299 * 17 16 15 37 37 H 1.08001 * 119.99872 * 307.12430 * 18 17 16 38 38 H 1.07996 * 120.00346 * 188.50908 * 19 18 17 39 39 H 1.08000 * 120.08106 * 359.95757 * 21 20 19 40 40 H 1.08003 * 119.92707 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.86092 * 179.74642 * 23 22 21 42 42 H 1.08000 * 119.93230 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.06857 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0013 11 6 1.9873 -5.3027 -0.0030 12 8 0.7910 -5.5023 -0.0040 13 7 2.8439 -6.3432 -0.0035 14 6 2.3302 -7.7151 -0.0045 15 6 3.5023 -8.6986 -0.0055 16 7 2.9871 -10.0743 -0.0072 17 6 4.0868 -11.0483 -0.0087 18 6 3.5209 -12.4449 -0.0098 19 6 3.9135 -13.3186 -0.9262 20 6 5.0380 -12.9893 -1.8274 21 6 6.1399 -12.2832 -1.3435 22 6 7.1865 -11.9794 -2.1896 23 6 7.1453 -12.3738 -3.5151 24 6 6.0557 -13.0741 -4.0010 25 6 5.0021 -13.3832 -3.1654 26 1 -0.4850 0.8400 -0.0004 27 1 3.1238 -3.7318 0.8891 28 1 3.1250 -3.7310 -0.8909 29 1 3.8008 -6.1836 -0.0031 30 1 1.7219 -7.8746 -0.8948 31 1 1.7214 -7.8758 0.8851 32 1 4.1110 -8.5393 0.8845 33 1 4.1108 -8.5378 -0.8954 34 1 2.3675 -10.2293 0.7739 35 1 4.6996 -10.9056 0.8813 36 1 4.6992 -10.9033 -0.8986 37 1 2.7953 -12.7342 0.7361 38 1 3.4118 -14.2709 -1.0145 39 1 6.1734 -11.9748 -0.3090 40 1 8.0398 -11.4325 -1.8165 41 1 7.9652 -12.1300 -4.1744 42 1 6.0292 -13.3788 -5.0367 43 1 4.1522 -13.9304 -3.5459 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123787366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:04 Heat of formation + Delta-G solvation = 5.899821 kcal Electronic energy + Delta-G solvation = -22174.911549 eV Core-core repulsion = 18732.430051 eV Total energy + Delta-G solvation = -3442.481498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.81977 -39.17291 -37.28048 -35.21011 -33.66715 -32.41828 -31.41967 -30.57248 -29.61103 -27.83254 -25.52215 -25.05769 -22.95628 -22.58616 -22.25107 -20.34020 -19.67215 -17.84584 -17.12238 -16.48798 -16.23107 -16.16403 -15.82865 -15.57666 -15.10621 -14.80063 -14.77867 -14.47615 -14.13012 -13.86190 -13.67486 -13.44172 -13.17923 -12.98124 -12.81607 -12.54350 -12.16096 -12.05869 -11.67265 -11.47741 -11.42442 -11.13991 -11.03662 -11.03122 -10.76254 -10.26141 -9.81727 -9.41060 -9.29071 -9.05488 -8.88429 -8.86523 -8.58262 -8.22842 -6.48971 -6.20512 -3.91160 0.63644 1.02002 1.93710 3.00053 3.11734 3.24105 3.27396 3.30389 3.45222 3.63620 4.17654 4.21428 4.31344 4.48501 4.55223 4.61287 4.70527 4.73393 4.86307 4.96180 5.04732 5.07984 5.14377 5.18860 5.19728 5.24939 5.39380 5.56799 5.62625 5.65771 5.78325 5.90328 5.92786 5.94135 6.00645 6.14094 6.14662 6.19278 6.37086 6.53022 6.61092 6.64859 6.97492 7.60109 7.70811 8.35950 8.62665 9.24473 10.86852 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.001701 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.893918 B =16455.683713 C =17198.161750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.050 3.950 16 N -0.681 5.681 17 C 0.072 3.928 18 C -0.134 4.134 19 C -0.117 4.117 20 C -0.055 4.055 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.108 4.108 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.397 0.603 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.343 0.657 35 H 0.039 0.961 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.110 -28.924 -2.388 32.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.079 4.079 16 N -0.313 5.313 17 C -0.056 4.056 18 C -0.152 4.152 19 C -0.136 4.136 20 C -0.055 4.055 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.126 4.126 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.057 0.943 36 H 0.112 0.888 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.840 -29.159 -3.068 32.008 hybrid contribution 2.734 1.367 0.915 3.190 sum 15.574 -27.792 -2.153 31.931 Atomic orbital electron populations 1.70009 1.05944 1.27561 1.46752 1.24998 0.95036 0.99021 0.94547 0.86221 0.79230 0.81241 0.78782 1.19937 1.20807 1.19963 1.22831 0.94878 0.91683 1.59074 0.90975 1.85407 1.04916 0.96276 1.96720 1.23529 1.06580 0.95352 1.04925 1.20292 0.86503 0.86226 0.75171 1.90708 1.15360 1.85580 1.47369 1.45897 1.09939 1.05453 1.78143 1.21131 0.95697 0.80331 1.03007 1.22097 0.96614 0.87969 1.01263 1.60370 1.18741 1.01725 1.50441 1.21520 0.92971 0.89422 1.01639 1.23149 1.00139 0.94137 0.97807 1.21637 0.96578 1.00211 0.95200 1.19081 0.94488 0.98164 0.93764 1.21408 0.93415 0.98259 1.00053 1.21116 0.98547 1.00302 0.93991 1.21233 0.98456 0.98429 0.95743 1.21125 0.93952 0.98877 0.99834 1.21286 0.98492 0.99916 0.92915 0.92126 0.89234 0.89189 0.76925 0.90652 0.91780 0.94532 0.90296 0.83864 0.94312 0.88800 0.86349 0.85872 0.85758 0.85936 0.86086 0.85956 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 11 C 0.53 10.09 7.85 -10.99 -0.09 10.01 16 12 O -0.52 -11.99 15.86 5.56 0.09 -11.90 16 13 N -0.74 -9.96 5.56 -60.30 -0.33 -10.29 16 14 C 0.12 1.47 5.93 -4.04 -0.02 1.45 16 15 C 0.05 0.44 5.80 -3.82 -0.02 0.42 16 16 N -0.68 -5.77 6.49 -115.06 -0.75 -6.52 16 17 C 0.07 0.53 4.44 -4.98 -0.02 0.51 16 18 C -0.13 -0.90 9.71 -36.22 -0.35 -1.25 16 19 C -0.12 -0.81 9.79 -37.57 -0.37 -1.18 16 20 C -0.05 -0.43 5.14 -105.02 -0.54 -0.97 16 21 C -0.11 -0.83 7.32 -39.20 -0.29 -1.11 16 22 C -0.12 -0.84 10.03 -39.64 -0.40 -1.24 16 23 C -0.12 -0.82 10.04 -39.50 -0.40 -1.22 16 24 C -0.12 -0.83 10.03 -39.64 -0.40 -1.23 16 25 C -0.11 -0.80 9.79 -39.20 -0.38 -1.19 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 28 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 29 H 0.40 4.09 8.47 -40.82 -0.35 3.74 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.34 2.58 8.72 -39.30 -0.34 2.24 16 35 H 0.04 0.25 7.99 -51.93 -0.41 -0.16 16 36 H 0.09 0.77 4.85 -51.93 -0.25 0.52 16 37 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.12 0.77 6.35 -52.49 -0.33 0.43 16 40 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -35.20 379.29 -10.94 -46.14 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.31 Total: 2.78 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -2.86 Total: -12.96 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.35 Total: -42.37 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.20 -10.94 -46.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.040 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds