Wall clock time and date at job start Tue Mar 31 2020 13:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00186 * 2 1 4 4 H 1.48505 * 109.46953 * 240.00011 * 3 2 1 5 5 H 1.48502 * 109.46872 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47067 * 120.00342 * 3 2 1 7 7 C 1.38807 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99894 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99849 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47259 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99854 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00429 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00553 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47396 * 179.97438 * 14 13 11 16 16 N 1.46903 * 109.47062 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99877 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.47362 * 179.97438 * 17 16 15 19 19 C 1.32562 * 120.00458 * 127.11814 * 18 17 16 20 20 C 1.47820 * 119.99674 * 8.51103 * 19 18 17 21 21 C 1.39528 * 120.13759 * 37.97616 * 20 19 18 22 22 C 1.37975 * 119.85199 * 179.97438 * 21 20 19 23 23 C 1.38346 * 120.14515 * 359.97438 * 22 21 20 24 24 C 1.38343 * 120.28278 * 0.02562 * 23 22 21 25 25 C 1.37977 * 120.14270 * 0.02562 * 24 23 22 26 26 H 0.96996 * 119.99884 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47338 * 59.99506 * 10 9 7 28 28 H 1.09005 * 109.46708 * 299.99536 * 10 9 7 29 29 H 0.97007 * 119.99692 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47038 * 60.00256 * 14 13 11 31 31 H 1.08993 * 109.47234 * 300.00097 * 14 13 11 32 32 H 1.08999 * 109.47131 * 59.99879 * 15 14 13 33 33 H 1.09002 * 109.47323 * 300.00218 * 15 14 13 34 34 H 1.00893 * 110.99821 * 303.95194 * 16 15 14 35 35 H 1.09003 * 109.46744 * 59.99809 * 17 16 15 36 36 H 1.08996 * 109.47239 * 300.00299 * 17 16 15 37 37 H 1.08001 * 119.99872 * 307.12430 * 18 17 16 38 38 H 1.07996 * 120.00346 * 188.50908 * 19 18 17 39 39 H 1.08000 * 120.08106 * 359.95757 * 21 20 19 40 40 H 1.08003 * 119.92707 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.86092 * 179.74642 * 23 22 21 42 42 H 1.08000 * 119.93230 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.06857 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0013 11 6 1.9873 -5.3027 -0.0030 12 8 0.7910 -5.5023 -0.0040 13 7 2.8439 -6.3432 -0.0035 14 6 2.3302 -7.7151 -0.0045 15 6 3.5023 -8.6986 -0.0055 16 7 2.9871 -10.0743 -0.0072 17 6 4.0868 -11.0483 -0.0087 18 6 3.5209 -12.4449 -0.0098 19 6 3.9135 -13.3186 -0.9262 20 6 5.0380 -12.9893 -1.8274 21 6 6.1399 -12.2832 -1.3435 22 6 7.1865 -11.9794 -2.1896 23 6 7.1453 -12.3738 -3.5151 24 6 6.0557 -13.0741 -4.0010 25 6 5.0021 -13.3832 -3.1654 26 1 -0.4850 0.8400 -0.0004 27 1 3.1238 -3.7318 0.8891 28 1 3.1250 -3.7310 -0.8909 29 1 3.8008 -6.1836 -0.0031 30 1 1.7219 -7.8746 -0.8948 31 1 1.7214 -7.8758 0.8851 32 1 4.1110 -8.5393 0.8845 33 1 4.1108 -8.5378 -0.8954 34 1 2.3675 -10.2293 0.7739 35 1 4.6996 -10.9056 0.8813 36 1 4.6992 -10.9033 -0.8986 37 1 2.7953 -12.7342 0.7361 38 1 3.4118 -14.2709 -1.0145 39 1 6.1734 -11.9748 -0.3090 40 1 8.0398 -11.4325 -1.8165 41 1 7.9652 -12.1300 -4.1744 42 1 6.0292 -13.3788 -5.0367 43 1 4.1522 -13.9304 -3.5459 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123787366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:04 Heat of formation + Delta-G solvation = -18.076734 kcal Electronic energy + Delta-G solvation = -22175.951250 eV Core-core repulsion = 18732.430051 eV Total energy + Delta-G solvation = -3443.521199 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64394 -40.29067 -38.00610 -36.13199 -34.60092 -34.54880 -31.97273 -31.61080 -30.51257 -28.82399 -27.64060 -25.81386 -23.51315 -23.23145 -22.93220 -21.77508 -20.21483 -19.80707 -17.88731 -17.70945 -17.18127 -17.07307 -16.87139 -16.57910 -16.41599 -16.12917 -15.80572 -15.33746 -15.11808 -15.00725 -14.68460 -14.38670 -14.20879 -14.02479 -13.73307 -13.45953 -13.39747 -13.16592 -12.86180 -12.65361 -12.61955 -12.48596 -12.40679 -11.91735 -11.74253 -11.63244 -11.12327 -11.01686 -10.76362 -10.27667 -10.15159 -9.80320 -9.46877 -9.10810 -8.66697 -8.33889 -6.12379 0.12668 0.51152 1.26154 1.41799 1.44607 1.48174 1.57222 1.60121 2.21799 2.28588 2.94097 3.00028 3.29190 3.45252 3.78700 3.86304 3.99094 4.03305 4.09455 4.11072 4.18122 4.27284 4.31055 4.41158 4.48041 4.51154 4.54648 4.60513 4.68344 4.85878 4.91717 4.93914 5.09271 5.17817 5.38408 5.42202 5.45094 5.50593 5.64046 5.69293 5.86416 5.95432 6.12766 6.20221 6.37333 6.48915 7.07048 7.23220 8.75085 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.001701 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.893918 B =16455.683713 C =17198.161750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.125 3.875 15 C 0.064 3.936 16 N -0.693 5.693 17 C 0.076 3.924 18 C -0.138 4.138 19 C -0.123 4.123 20 C -0.070 4.070 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.130 4.130 25 C -0.124 4.124 26 H 0.271 0.729 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.417 0.583 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.348 0.652 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.818 -29.225 -2.190 34.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.366 5.366 14 C 0.001 3.999 15 C -0.066 4.066 16 N -0.326 5.326 17 C -0.052 4.052 18 C -0.156 4.156 19 C -0.142 4.142 20 C -0.070 4.070 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.148 4.148 25 C -0.142 4.142 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.254 0.746 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.167 0.833 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.611 -29.504 -2.869 33.502 hybrid contribution 1.941 1.303 0.836 2.483 sum 17.552 -28.201 -2.032 33.279 Atomic orbital electron populations 1.70182 1.07992 1.28675 1.47919 1.26154 0.95986 1.03378 0.93739 0.84991 0.77783 0.75622 0.79514 1.18638 1.20443 1.18606 1.23180 0.95383 0.91944 1.58982 0.89794 1.85607 1.10655 0.99313 1.97068 1.23367 1.03541 0.94140 1.06957 1.20083 0.86192 0.86728 0.75090 1.90697 1.17524 1.86125 1.50136 1.45602 1.10402 1.04988 1.75625 1.21190 0.96986 0.79850 1.01884 1.21936 0.95044 0.87313 1.02307 1.60338 1.19496 1.01700 1.51041 1.21485 0.92584 0.89343 1.01773 1.23257 1.00428 0.93851 0.98081 1.21794 0.96521 1.00846 0.95051 1.19299 0.95034 0.98558 0.94132 1.21576 0.93477 0.98300 1.00607 1.21393 0.99012 1.00342 0.94126 1.21525 0.98941 0.98271 0.96156 1.21396 0.93928 0.98846 1.00647 1.21518 0.99135 1.00369 0.93169 0.91999 0.86970 0.87092 0.74562 0.92537 0.92271 0.92706 0.89913 0.83285 0.93078 0.89642 0.85161 0.84815 0.84942 0.84371 0.84496 0.84502 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.55 -31.27 9.50 67.96 0.65 -30.63 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.75 16 10 C -0.13 -5.08 6.16 71.23 0.44 -4.64 16 11 C 0.53 19.81 7.85 87.66 0.69 20.50 16 12 O -0.57 -26.79 15.86 -3.03 -0.05 -26.84 16 13 N -0.71 -17.73 5.56 -463.09 -2.57 -20.31 16 14 C 0.13 2.82 5.93 86.38 0.51 3.33 16 15 C 0.06 0.96 5.80 86.30 0.50 1.46 16 16 N -0.69 -10.51 6.49 -517.93 -3.36 -13.87 16 17 C 0.08 0.96 4.44 85.55 0.38 1.34 16 18 C -0.14 -1.65 9.71 24.53 0.24 -1.41 16 19 C -0.12 -1.57 9.79 23.66 0.23 -1.34 16 20 C -0.07 -1.03 5.14 -20.12 -0.10 -1.14 16 21 C -0.12 -1.64 7.32 22.52 0.16 -1.47 16 22 C -0.13 -1.64 10.03 22.23 0.22 -1.41 16 23 C -0.13 -1.63 10.04 22.32 0.22 -1.41 16 24 C -0.13 -1.70 10.03 22.23 0.22 -1.48 16 25 C -0.12 -1.77 9.79 22.52 0.22 -1.55 16 26 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.42 7.21 8.47 -92.70 -0.79 6.43 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.35 4.65 8.72 -89.70 -0.78 3.87 16 35 H 0.05 0.53 7.99 -2.39 -0.02 0.51 16 36 H 0.09 1.27 4.85 -2.39 -0.01 1.25 16 37 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.13 1.44 6.35 -2.91 -0.02 1.43 16 40 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -78.12 379.29 -0.33 -78.45 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.55 Total: 21.38 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 5.05 Total: -18.68 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -5.65 Total: -90.12 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -78.12 -0.33 -78.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.371 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds