Wall clock time and date at job start Tue Mar 31 2020 12:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45208 * 109.47121 * 2 1 4 4 C 1.34230 * 116.99613 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00685 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99601 * 180.02562 * 4 3 2 7 7 N 1.46904 * 109.47232 * 174.26339 * 6 4 3 8 8 C 1.46897 * 111.00182 * 287.81512 * 7 6 4 9 9 C 1.50708 * 109.46934 * 295.06543 * 8 7 6 10 10 H 1.07998 * 119.99750 * 5.32077 * 9 8 7 11 11 C 1.37874 * 119.99526 * 185.32807 * 9 8 7 12 12 N 1.31519 * 119.99510 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00466 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47317 * 90.00292 * 13 11 9 15 15 H 1.48499 * 109.47447 * 210.00039 * 13 11 9 16 16 H 1.48503 * 109.47258 * 330.00480 * 13 11 9 17 17 C 1.46898 * 110.99982 * 163.85992 * 7 6 4 18 18 C 1.50699 * 109.47099 * 190.00427 * 17 7 6 19 19 C 1.38440 * 119.82558 * 270.02326 * 18 17 7 20 20 C 1.37873 * 120.22144 * 179.71984 * 19 18 17 21 21 C 1.39686 * 119.86732 * 0.52679 * 20 19 18 22 22 C 1.43200 * 120.17210 * 179.74389 * 21 20 19 23 23 N 9.63303 * 165.31401 * 14.37398 * 4 1 2 24 24 C 1.39871 * 119.66197 * 359.47539 * 21 20 19 25 25 F 1.35101 * 120.11100 * 180.27085 * 24 21 20 26 26 C 1.38232 * 119.83158 * 89.99491 * 18 17 7 27 27 H 1.09008 * 109.46862 * 299.99900 * 1 2 3 28 28 H 1.09004 * 109.47190 * 59.99397 * 1 2 3 29 29 H 1.08999 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46949 * 240.00593 * 2 1 3 31 31 H 1.08998 * 109.47289 * 120.00131 * 2 1 3 32 32 H 1.09008 * 109.47255 * 54.26412 * 6 4 3 33 33 H 1.08999 * 109.47398 * 294.26423 * 6 4 3 34 34 H 1.09005 * 109.47083 * 55.06165 * 8 7 6 35 35 H 1.09002 * 109.47379 * 175.06221 * 8 7 6 36 36 H 0.97002 * 119.99705 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47159 * 70.00178 * 17 7 6 38 38 H 1.09006 * 109.47000 * 310.00098 * 17 7 6 39 39 H 1.07999 * 119.89285 * 359.97438 * 19 18 17 40 40 H 1.08002 * 120.06914 * 180.27644 * 20 19 18 41 41 H 1.08004 * 119.93669 * 0.02954 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3814 2.8631 0.1377 8 6 5.7623 2.4669 1.5000 9 6 5.3412 3.5394 2.4714 10 1 4.7654 4.3852 2.1256 11 6 5.6911 3.4408 3.8013 12 7 5.3240 4.3770 4.6489 13 14 6.6864 1.9776 4.3993 14 1 8.1348 2.2896 4.2981 15 1 6.3402 1.6883 5.8141 16 1 6.3758 0.7918 3.5612 17 6 6.0108 4.1369 -0.2355 18 6 7.5042 3.9536 -0.3198 19 6 8.2877 4.1594 0.8028 20 6 9.6542 3.9884 0.7363 21 6 10.2508 3.6168 -0.4708 22 6 11.6701 3.4427 -0.5487 23 7 12.7963 3.3041 -0.6074 24 6 9.4543 3.4101 -1.6019 25 9 10.0212 3.0452 -2.7726 26 6 8.0846 3.5801 -1.5175 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.5054 3.5021 0.8348 33 1 3.6689 3.4351 -0.9364 34 1 5.2688 1.5296 1.7572 35 1 6.8431 2.3343 1.5511 36 1 5.5698 4.3075 5.5847 37 1 5.7792 4.8908 0.5169 38 1 5.6293 4.4608 -1.2038 39 1 7.8267 4.4510 1.7349 40 1 10.2626 4.1454 1.6147 41 1 7.4671 3.4212 -2.3893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139530082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:07 Heat of formation + Delta-G solvation = -67.496038 kcal Electronic energy + Delta-G solvation = -26491.310049 eV Core-core repulsion = 22479.432692 eV Total energy + Delta-G solvation = -4011.877357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.96626 -40.09947 -39.37243 -37.27154 -36.37686 -35.69984 -32.68351 -31.98182 -31.56056 -30.55921 -28.53684 -27.67945 -24.92115 -23.14864 -22.81289 -22.53140 -21.00624 -19.72973 -19.04376 -17.67570 -17.05741 -16.69495 -16.51281 -16.35398 -15.75492 -15.72770 -14.91355 -14.82141 -14.39602 -14.28704 -13.97216 -13.75882 -13.66684 -13.49213 -13.15611 -12.90298 -12.79693 -12.64091 -12.51920 -12.10338 -11.86975 -11.73573 -11.53618 -11.45482 -11.39139 -11.23534 -11.04626 -10.86917 -10.54127 -10.29584 -10.08589 -9.86964 -9.72055 -8.93292 -8.75730 -8.59421 -7.52656 -6.28460 -4.30227 0.69209 1.28342 2.62446 2.71870 2.84663 3.03335 3.16525 3.27533 3.35248 3.76950 3.83451 4.12026 4.26260 4.68572 4.77992 4.97058 4.99509 5.06307 5.08089 5.16188 5.30647 5.32193 5.40604 5.52375 5.62977 5.73792 5.75082 5.79108 5.94776 5.96287 6.04229 6.12572 6.25587 6.36669 6.63994 6.71277 6.78327 6.90861 7.00594 7.29942 7.44808 7.66475 7.72456 8.21479 8.29206 8.70128 9.34320 10.82958 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.004302 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.881718 B = 6506.968225 C = 8199.515857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.366 6.366 4 C 0.466 3.534 5 O -0.492 6.492 6 C 0.066 3.934 7 N -0.516 5.516 8 C 0.146 3.854 9 C -0.561 4.561 10 H 0.079 0.921 11 C 0.082 3.918 12 N -0.890 5.890 13 Si 0.864 3.136 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.262 1.262 17 C 0.089 3.911 18 C 0.001 3.999 19 C -0.107 4.107 20 C -0.048 4.048 21 C -0.076 4.076 22 C 0.263 3.737 23 N -0.422 5.422 24 C 0.136 3.864 25 F -0.135 7.135 26 C -0.138 4.138 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.266 0.734 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.159 0.841 40 H 0.139 0.861 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 -1.118 -10.256 11.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.283 6.283 4 C 0.308 3.692 5 O -0.377 6.377 6 C -0.063 4.063 7 N -0.240 5.240 8 C 0.020 3.980 9 C -0.599 4.599 10 H 0.097 0.903 11 C -0.122 4.122 12 N -0.528 5.528 13 Si 0.691 3.309 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.186 1.186 17 C -0.038 4.038 18 C 0.000 4.000 19 C -0.125 4.125 20 C -0.069 4.069 21 C -0.081 4.081 22 C -0.052 4.052 23 N -0.098 5.098 24 C 0.114 3.886 25 F -0.113 7.113 26 C -0.157 4.157 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.176 0.824 40 H 0.157 0.843 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.948 -1.992 -10.529 10.891 hybrid contribution -0.049 -0.463 0.986 1.091 sum -1.997 -2.455 -9.542 10.053 Atomic orbital electron populations 1.21789 0.93053 1.02550 1.03417 1.22901 0.94964 0.80969 1.02314 1.86491 1.25368 1.31691 1.84775 1.23773 0.79902 0.93184 0.72324 1.90631 1.60095 1.42983 1.44011 1.21461 0.90590 0.90045 1.04191 1.62157 1.04604 1.28008 1.29227 1.20384 0.97167 0.96945 0.83505 1.21599 1.36807 1.08394 0.93127 0.90326 1.24851 0.95213 0.95473 0.96692 1.69906 1.45523 1.33393 1.03931 0.87003 0.81079 0.84328 0.78510 1.19682 1.21209 1.18630 1.21068 0.88752 0.92741 1.01285 1.19894 0.96351 0.92241 0.91556 1.21565 0.92298 0.98432 1.00197 1.21116 0.95395 0.95332 0.95049 1.15979 0.84748 1.12044 0.95324 1.25473 0.92488 0.93486 0.93780 1.81206 1.11912 1.09355 1.07302 1.17547 0.91199 0.99527 0.80302 1.91512 1.85386 1.88901 1.45505 1.20958 0.91662 1.02935 1.00172 0.91436 0.91683 0.90647 0.91646 0.91450 0.88608 0.88135 0.94535 0.94679 0.92440 0.90448 0.90704 0.82373 0.84276 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -5.61 10.22 -39.26 -0.40 -6.01 16 4 C 0.47 8.11 7.54 36.01 0.27 8.38 16 5 O -0.49 -9.98 14.91 -18.75 -0.28 -10.26 16 6 C 0.07 1.05 5.43 -4.97 -0.03 1.02 16 7 N -0.52 -9.03 4.29 -238.95 -1.03 -10.05 16 8 C 0.15 3.11 3.44 -4.97 -0.02 3.09 16 9 C -0.56 -13.15 7.22 -34.44 -0.25 -13.40 16 10 H 0.08 1.94 6.21 -52.49 -0.33 1.62 16 11 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 12 N -0.89 -24.22 13.96 55.43 0.77 -23.45 16 13 Si 0.86 19.81 27.37 -169.99 -4.65 15.16 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.26 -6.10 6.70 56.52 0.38 -5.72 16 17 C 0.09 1.29 4.88 -4.98 -0.02 1.26 16 18 C 0.00 0.02 4.89 -104.55 -0.51 -0.50 16 19 C -0.11 -1.57 7.95 -39.64 -0.32 -1.88 16 20 C -0.05 -0.65 9.76 -39.17 -0.38 -1.03 16 21 C -0.08 -1.05 5.74 -106.82 -0.61 -1.66 16 22 C 0.26 3.92 14.98 -22.46 -0.34 3.58 16 23 N -0.42 -6.95 18.54 41.85 0.78 -6.17 16 24 C 0.14 1.84 7.28 -38.96 -0.28 1.56 16 25 F -0.13 -1.88 16.81 2.25 0.04 -1.84 16 26 C -0.14 -1.77 9.66 -39.57 -0.38 -2.15 16 27 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 32 H 0.10 1.65 6.43 -51.92 -0.33 1.32 16 33 H 0.10 1.23 7.80 -51.93 -0.41 0.82 16 34 H 0.04 0.88 6.01 -51.93 -0.31 0.56 16 35 H 0.04 0.75 5.36 -51.93 -0.28 0.48 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 37 H 0.08 1.24 6.27 -51.93 -0.33 0.91 16 38 H 0.07 0.86 7.80 -51.93 -0.40 0.45 16 39 H 0.16 2.62 7.35 -52.49 -0.39 2.24 16 40 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -29.31 356.07 -6.65 -35.96 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.89 Total: 1.04 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.35 Total: 0.26 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.52 Total: -39.67 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.68 Total: -16.27 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.65 Total: 15.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.31 -6.65 -35.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139530082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.538 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds