Wall clock time and date at job start Tue Mar 31 2020 12:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46708 * 2 1 4 4 C 1.47193 * 109.47296 * 120.00173 * 2 1 3 5 5 N 2.60795 * 109.47247 * 120.00088 * 2 1 3 6 6 C 1.50700 * 109.47369 * 240.00530 * 2 1 3 7 7 C 1.38386 * 119.92408 * 300.01930 * 6 2 1 8 8 C 1.38336 * 120.29675 * 179.97438 * 7 6 2 9 9 C 1.37981 * 120.14619 * 359.72232 * 8 7 6 10 10 C 1.39577 * 119.84548 * 0.55498 * 9 8 7 11 11 C 1.47812 * 120.14301 * 179.72430 * 10 9 8 12 12 O 1.21564 * 120.00130 * 179.72177 * 11 10 9 13 13 N 1.34783 * 120.00221 * 359.72101 * 11 10 9 14 14 C 1.39861 * 120.00039 * 184.27325 * 13 11 10 15 15 C 1.39312 * 119.94919 * 144.38740 * 14 13 11 16 16 C 1.38480 * 120.42515 * 179.97438 * 15 14 13 17 17 C 1.37683 * 120.32369 * 359.97438 * 16 15 14 18 18 C 1.40742 * 119.89040 * 0.02562 * 17 16 15 19 19 C 1.41406 * 120.20643 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99687 * 155.39050 * 19 18 17 21 21 C 1.39934 * 120.00485 * 335.38992 * 19 18 17 22 22 N 1.30828 * 119.99752 * 344.57751 * 21 19 18 23 23 Si 1.86797 * 119.99951 * 164.57313 * 21 19 18 24 24 H 1.48511 * 109.47033 * 94.97224 * 23 21 19 25 25 H 1.48495 * 109.47177 * 214.96541 * 23 21 19 26 26 H 1.48499 * 109.47383 * 334.97342 * 23 21 19 27 27 C 1.38257 * 119.94650 * 324.10490 * 14 13 11 28 28 C 1.37923 * 119.92905 * 119.99814 * 6 2 1 29 29 H 1.09007 * 109.46315 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47165 * 299.99369 * 1 2 3 31 31 H 1.08999 * 109.47007 * 59.99959 * 1 2 3 32 32 H 1.07998 * 119.85520 * 0.02562 * 7 6 2 33 33 H 1.07998 * 119.93159 * 179.97438 * 8 7 6 34 34 H 1.07994 * 120.08036 * 180.27602 * 9 8 7 35 35 H 0.96998 * 119.99759 * 4.54054 * 13 11 10 36 36 H 1.08004 * 119.78662 * 359.97438 * 15 14 13 37 37 H 1.07998 * 119.83404 * 180.02562 * 16 15 14 38 38 H 1.07997 * 120.05145 * 179.97438 * 17 16 15 39 39 H 0.97002 * 120.00090 * 180.02562 * 22 21 19 40 40 H 1.07998 * 120.16249 * 0.03330 * 27 14 13 41 41 H 1.08004 * 120.07833 * 359.97438 * 28 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1293 6 6 2.0324 -0.7103 -1.2305 7 6 1.6969 -2.0351 -1.4483 8 6 2.1533 -2.6944 -2.5755 9 6 2.9424 -2.0324 -3.4936 10 6 3.2894 -0.6979 -3.2771 11 6 4.1394 0.0159 -4.2532 12 8 4.4358 1.1796 -4.0646 13 7 4.5858 -0.6236 -5.3525 14 6 5.4622 0.0229 -6.2300 15 6 6.4660 -0.7012 -6.8696 16 6 7.3387 -0.0711 -7.7408 17 6 7.2234 1.2790 -7.9849 18 6 6.2143 2.0235 -7.3461 19 6 6.0901 3.4106 -7.5915 20 1 5.1385 3.9012 -7.4487 21 6 7.2000 4.1476 -8.0194 22 7 8.4023 3.6445 -7.9065 23 14 6.9648 5.8499 -8.7517 24 1 7.1386 6.8738 -7.6902 25 1 7.9698 6.0714 -9.8222 26 1 5.5990 5.9579 -9.3248 27 6 5.3274 1.3786 -6.4660 28 6 2.8253 -0.0385 -2.1374 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.0751 -2.5563 -0.7355 33 1 1.8882 -3.7284 -2.7394 34 1 3.2945 -2.5468 -4.3754 35 1 4.2963 -1.5307 -5.5370 36 1 6.5640 -1.7607 -6.6847 37 1 8.1131 -0.6418 -8.2317 38 1 7.9067 1.7659 -8.6648 39 1 9.1718 4.1555 -8.2027 40 1 4.5471 1.9400 -5.9738 41 1 3.0859 0.9957 -1.9667 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148617280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:58 Heat of formation + Delta-G solvation = 33.914328 kcal Electronic energy + Delta-G solvation = -24541.451526 eV Core-core repulsion = 20964.740878 eV Total energy + Delta-G solvation = -3576.710649 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45906 -39.14267 -37.30833 -36.84454 -34.63107 -34.30922 -33.04202 -31.36200 -30.05232 -29.82245 -27.99451 -25.31666 -25.23641 -24.05871 -22.28720 -21.44354 -20.85429 -19.74126 -18.37023 -17.58201 -17.20554 -16.27597 -15.82547 -15.44272 -15.25005 -14.92393 -14.70960 -14.47026 -14.22618 -13.99705 -13.80512 -13.70285 -13.17947 -13.04365 -12.89897 -12.66840 -12.47046 -12.19199 -12.09519 -11.90414 -11.67364 -11.57578 -11.32031 -11.21015 -11.08435 -10.70120 -10.49970 -10.16935 -9.76116 -9.51808 -9.20642 -9.17428 -9.11928 -8.84988 -7.44855 -6.93223 -6.70484 -4.33349 0.65820 1.02449 2.44059 2.46567 2.65667 2.84018 3.09681 3.12266 3.14519 3.23188 3.45866 3.65297 3.86873 3.97129 4.20582 4.48678 4.61201 4.64999 4.69689 4.76477 4.93884 4.99423 5.18463 5.28548 5.38793 5.52041 5.66501 5.69541 5.72722 6.08170 6.10441 6.13749 6.24602 6.38966 6.56227 6.72853 7.02251 7.04627 7.08793 7.23855 7.26767 7.54819 7.72230 7.96893 8.09195 8.15686 8.25111 8.60241 8.70712 8.94267 8.98645 10.23012 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.002643 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.849460 B =10592.007473 C =11596.662336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 H 0.127 0.873 4 C 0.213 3.787 5 N -0.431 5.431 6 C -0.099 4.099 7 C -0.087 4.087 8 C -0.123 4.123 9 C -0.082 4.082 10 C -0.119 4.119 11 C 0.544 3.456 12 O -0.508 6.508 13 N -0.661 5.661 14 C 0.147 3.853 15 C -0.261 4.261 16 C -0.093 4.093 17 C -0.172 4.172 18 C 0.116 3.884 19 C -0.454 4.454 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.795 5.795 23 Si 0.909 3.091 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.208 4.208 28 C -0.046 4.046 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.397 0.603 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.122 0.878 39 H 0.280 0.720 40 H 0.111 0.889 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 -9.216 8.812 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.144 0.856 4 C -0.105 4.105 5 N -0.106 5.106 6 C -0.100 4.100 7 C -0.105 4.105 8 C -0.141 4.141 9 C -0.101 4.101 10 C -0.123 4.123 11 C 0.331 3.669 12 O -0.384 6.384 13 N -0.305 5.305 14 C 0.055 3.945 15 C -0.283 4.283 16 C -0.112 4.112 17 C -0.192 4.192 18 C 0.113 3.887 19 C -0.484 4.484 20 H 0.096 0.904 21 C -0.143 4.143 22 N -0.420 5.420 23 Si 0.734 3.266 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.230 4.230 28 C -0.065 4.065 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.140 0.860 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.982 -9.121 10.350 18.944 hybrid contribution -0.101 0.336 -0.728 0.808 sum -13.083 -8.786 9.622 18.464 Atomic orbital electron populations 1.21861 0.90799 1.03538 1.03855 1.17768 0.97283 0.98682 0.83555 0.85575 1.29024 0.93456 0.93862 0.94186 1.81232 1.08573 1.09173 1.11636 1.19336 1.00351 0.94652 0.95667 1.21152 0.98382 0.93737 0.97270 1.21055 0.98499 1.00263 0.94329 1.21431 0.96223 0.93416 0.99002 1.20083 1.00780 0.94620 0.96767 1.18241 0.80591 0.86802 0.81283 1.90844 1.56362 1.15638 1.75530 1.43315 1.46525 1.17622 1.23012 1.17421 0.91486 0.92724 0.92826 1.20049 1.01144 0.97763 1.09296 1.20467 0.97444 0.95136 0.98142 1.21423 1.02451 0.92109 1.03207 1.17526 0.90089 0.93168 0.87893 1.19568 0.96595 0.93118 1.39119 0.90441 1.25912 0.94563 1.00412 0.93430 1.69824 0.99017 1.38297 1.34897 0.86284 0.79429 0.81609 0.79313 1.19571 1.20087 1.18436 1.21072 1.05607 0.92702 1.03579 1.21182 0.93159 1.00586 0.91561 0.91560 0.91198 0.89925 0.85742 0.85163 0.85311 0.76795 0.89337 0.89038 0.86025 0.90954 0.87084 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 8.96 37.16 0.33 -0.30 16 2 C 0.05 0.32 2.95 -94.56 -0.28 0.04 16 3 H 0.13 0.63 7.87 -51.93 -0.41 0.22 16 4 C 0.21 2.01 14.25 -20.76 -0.30 1.71 16 5 N -0.43 -5.33 18.54 42.15 0.78 -4.55 16 6 C -0.10 -0.85 4.75 -104.68 -0.50 -1.35 16 7 C -0.09 -0.69 8.80 -39.49 -0.35 -1.04 16 8 C -0.12 -0.99 10.03 -39.64 -0.40 -1.39 16 9 C -0.08 -0.81 9.54 -39.18 -0.37 -1.18 16 10 C -0.12 -1.54 5.87 -104.97 -0.62 -2.16 16 11 C 0.54 9.62 7.61 -12.34 -0.09 9.53 16 12 O -0.51 -11.21 13.83 5.31 0.07 -11.13 16 13 N -0.66 -11.56 5.28 -10.77 -0.06 -11.62 16 14 C 0.15 3.28 6.28 -83.79 -0.53 2.76 16 15 C -0.26 -5.69 9.97 -39.09 -0.39 -6.08 16 16 C -0.09 -2.15 10.01 -39.70 -0.40 -2.55 16 17 C -0.17 -4.50 8.69 -38.84 -0.34 -4.83 16 18 C 0.12 3.18 5.58 -106.85 -0.60 2.58 16 19 C -0.45 -12.36 9.06 -37.74 -0.34 -12.70 16 20 H 0.08 2.05 7.89 -52.48 -0.41 1.63 16 21 C 0.07 1.89 5.19 -17.34 -0.09 1.80 16 22 N -0.79 -20.84 10.82 55.55 0.60 -20.24 16 23 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 27 C -0.21 -5.34 8.43 -38.68 -0.33 -5.66 16 28 C -0.05 -0.52 9.21 -39.18 -0.36 -0.88 16 29 H 0.07 0.28 7.38 -51.92 -0.38 -0.11 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.12 0.76 7.55 -52.49 -0.40 0.37 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.13 1.03 6.41 -52.49 -0.34 0.69 16 35 H 0.40 5.27 6.87 -40.82 -0.28 4.99 16 36 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.12 3.26 6.07 -52.49 -0.32 2.94 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 40 H 0.11 2.92 6.28 -52.49 -0.33 2.59 16 41 H 0.14 1.62 7.53 -52.48 -0.40 1.23 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -33.01 357.16 -8.69 -41.71 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.51 Total: 8.25 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -5.93 Total: -21.70 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 1.33 Total: -36.41 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.01 -8.69 -41.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148617280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.620 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds