Wall clock time and date at job start Tue Mar 31 2020 12:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46708 * 2 1 4 4 C 1.47193 * 109.47296 * 120.00173 * 2 1 3 5 5 N 2.60795 * 109.47247 * 120.00088 * 2 1 3 6 6 C 1.50700 * 109.47369 * 240.00530 * 2 1 3 7 7 C 1.38386 * 119.92408 * 300.01930 * 6 2 1 8 8 C 1.38336 * 120.29675 * 179.97438 * 7 6 2 9 9 C 1.37981 * 120.14619 * 359.72232 * 8 7 6 10 10 C 1.39577 * 119.84548 * 0.55498 * 9 8 7 11 11 C 1.47812 * 120.14301 * 179.72430 * 10 9 8 12 12 O 1.21564 * 120.00130 * 179.72177 * 11 10 9 13 13 N 1.34783 * 120.00221 * 359.72101 * 11 10 9 14 14 C 1.39861 * 120.00039 * 184.27325 * 13 11 10 15 15 C 1.39312 * 119.94919 * 144.38740 * 14 13 11 16 16 C 1.38480 * 120.42515 * 179.97438 * 15 14 13 17 17 C 1.37683 * 120.32369 * 359.97438 * 16 15 14 18 18 C 1.40742 * 119.89040 * 0.02562 * 17 16 15 19 19 C 1.41406 * 120.20643 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99687 * 155.39050 * 19 18 17 21 21 C 1.39934 * 120.00485 * 335.38992 * 19 18 17 22 22 N 1.30828 * 119.99752 * 344.57751 * 21 19 18 23 23 Si 1.86797 * 119.99951 * 164.57313 * 21 19 18 24 24 H 1.48511 * 109.47033 * 94.97224 * 23 21 19 25 25 H 1.48495 * 109.47177 * 214.96541 * 23 21 19 26 26 H 1.48499 * 109.47383 * 334.97342 * 23 21 19 27 27 C 1.38257 * 119.94650 * 324.10490 * 14 13 11 28 28 C 1.37923 * 119.92905 * 119.99814 * 6 2 1 29 29 H 1.09007 * 109.46315 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47165 * 299.99369 * 1 2 3 31 31 H 1.08999 * 109.47007 * 59.99959 * 1 2 3 32 32 H 1.07998 * 119.85520 * 0.02562 * 7 6 2 33 33 H 1.07998 * 119.93159 * 179.97438 * 8 7 6 34 34 H 1.07994 * 120.08036 * 180.27602 * 9 8 7 35 35 H 0.96998 * 119.99759 * 4.54054 * 13 11 10 36 36 H 1.08004 * 119.78662 * 359.97438 * 15 14 13 37 37 H 1.07998 * 119.83404 * 180.02562 * 16 15 14 38 38 H 1.07997 * 120.05145 * 179.97438 * 17 16 15 39 39 H 0.97002 * 120.00090 * 180.02562 * 22 21 19 40 40 H 1.07998 * 120.16249 * 0.03330 * 27 14 13 41 41 H 1.08004 * 120.07833 * 359.97438 * 28 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1293 6 6 2.0324 -0.7103 -1.2305 7 6 1.6969 -2.0351 -1.4483 8 6 2.1533 -2.6944 -2.5755 9 6 2.9424 -2.0324 -3.4936 10 6 3.2894 -0.6979 -3.2771 11 6 4.1394 0.0159 -4.2532 12 8 4.4358 1.1796 -4.0646 13 7 4.5858 -0.6236 -5.3525 14 6 5.4622 0.0229 -6.2300 15 6 6.4660 -0.7012 -6.8696 16 6 7.3387 -0.0711 -7.7408 17 6 7.2234 1.2790 -7.9849 18 6 6.2143 2.0235 -7.3461 19 6 6.0901 3.4106 -7.5915 20 1 5.1385 3.9012 -7.4487 21 6 7.2000 4.1476 -8.0194 22 7 8.4023 3.6445 -7.9065 23 14 6.9648 5.8499 -8.7517 24 1 7.1386 6.8738 -7.6902 25 1 7.9698 6.0714 -9.8222 26 1 5.5990 5.9579 -9.3248 27 6 5.3274 1.3786 -6.4660 28 6 2.8253 -0.0385 -2.1374 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.0751 -2.5563 -0.7355 33 1 1.8882 -3.7284 -2.7394 34 1 3.2945 -2.5468 -4.3754 35 1 4.2963 -1.5307 -5.5370 36 1 6.5640 -1.7607 -6.6847 37 1 8.1131 -0.6418 -8.2317 38 1 7.9067 1.7659 -8.6648 39 1 9.1718 4.1555 -8.2027 40 1 4.5471 1.9400 -5.9738 41 1 3.0859 0.9957 -1.9667 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148617280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:55 Heat of formation + Delta-G solvation = 15.420315 kcal Electronic energy + Delta-G solvation = -24542.253487 eV Core-core repulsion = 20964.740878 eV Total energy + Delta-G solvation = -3577.512609 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62044 -40.26468 -38.89784 -37.80809 -36.26832 -35.22653 -34.69966 -32.24661 -31.74833 -30.87049 -29.55377 -27.26060 -25.81093 -25.15833 -23.05982 -23.00315 -22.60418 -21.16821 -19.73724 -19.02937 -17.99957 -17.44787 -17.24090 -16.81885 -16.46078 -16.34431 -16.16151 -15.76381 -15.19719 -15.02079 -14.85803 -14.65073 -14.59275 -14.38237 -13.99257 -13.75513 -13.62313 -13.40047 -13.14681 -13.04945 -12.80605 -12.69513 -12.65419 -12.55758 -12.21327 -12.20183 -11.94453 -11.82514 -11.58080 -11.25585 -10.91582 -10.60613 -9.99134 -9.89123 -9.38827 -8.74420 -8.61151 -6.36384 -0.21930 0.28845 0.93528 1.03783 1.37037 1.48171 1.53514 1.69544 1.73549 1.89356 2.15711 2.23064 2.68914 2.77453 3.06384 3.56465 3.63075 3.75592 3.90122 4.11047 4.16628 4.26257 4.30236 4.48063 4.51681 4.63857 4.75120 4.91667 4.98954 5.02271 5.04604 5.10996 5.14051 5.21770 5.31203 5.32538 5.36361 5.39557 5.45217 5.75009 5.85089 5.88425 6.08630 6.12494 6.34642 6.51472 6.60820 6.69612 6.94315 7.01339 7.27081 8.34553 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.002643 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.849460 B =10592.007473 C =11596.662336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 H 0.141 0.859 4 C 0.238 3.762 5 N -0.484 5.484 6 C -0.094 4.094 7 C -0.078 4.078 8 C -0.117 4.117 9 C -0.078 4.078 10 C -0.145 4.145 11 C 0.541 3.459 12 O -0.564 6.564 13 N -0.651 5.651 14 C 0.154 3.846 15 C -0.250 4.250 16 C -0.092 4.092 17 C -0.199 4.199 18 C 0.085 3.915 19 C -0.498 4.498 20 H 0.067 0.933 21 C 0.033 3.967 22 N -0.826 5.826 23 Si 0.984 3.016 24 H -0.265 1.265 25 H -0.260 1.260 26 H -0.259 1.259 27 C -0.235 4.235 28 C -0.058 4.058 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.420 0.580 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.288 0.712 40 H 0.090 0.910 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.493 -11.580 9.298 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.030 3.970 3 H 0.158 0.842 4 C -0.079 4.079 5 N -0.161 5.161 6 C -0.096 4.096 7 C -0.096 4.096 8 C -0.134 4.134 9 C -0.096 4.096 10 C -0.148 4.148 11 C 0.332 3.668 12 O -0.443 6.443 13 N -0.297 5.297 14 C 0.061 3.939 15 C -0.271 4.271 16 C -0.111 4.111 17 C -0.219 4.219 18 C 0.082 3.918 19 C -0.528 4.528 20 H 0.085 0.915 21 C -0.181 4.181 22 N -0.452 5.452 23 Si 0.805 3.195 24 H -0.190 1.190 25 H -0.184 1.184 26 H -0.183 1.183 27 C -0.257 4.257 28 C -0.077 4.077 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.168 0.832 33 H 0.183 0.817 34 H 0.166 0.834 35 H 0.259 0.741 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.476 -11.550 10.843 21.460 hybrid contribution 0.271 0.888 -0.764 1.202 sum -14.204 -10.662 10.079 20.421 Atomic orbital electron populations 1.21893 0.88624 1.04398 1.04820 1.17979 0.98844 0.98784 0.81401 0.84151 1.29450 0.91945 0.92615 0.93890 1.81262 1.10438 1.11003 1.13348 1.19425 0.99456 0.95124 0.95548 1.21566 0.97356 0.93232 0.97458 1.21442 0.97017 1.01638 0.93325 1.21648 0.95957 0.91918 1.00095 1.19759 1.02392 0.96044 0.96616 1.19062 0.79973 0.86300 0.81511 1.90817 1.58490 1.18272 1.76718 1.43195 1.45751 1.18467 1.22286 1.17507 0.91958 0.91849 0.92591 1.20490 0.99469 0.99710 1.07430 1.20844 0.98141 0.94195 0.97948 1.21393 1.02705 0.93603 1.04165 1.17879 0.91227 0.93852 0.88805 1.19775 0.97075 0.93949 1.41961 0.91525 1.26767 0.93747 1.04517 0.93075 1.69869 0.99783 1.40158 1.35406 0.85170 0.79596 0.76087 0.78684 1.19002 1.18399 1.18284 1.21045 1.05758 0.94530 1.04336 1.21186 0.94052 1.00396 0.92058 0.90770 0.90165 0.89097 0.83197 0.81742 0.83408 0.74080 0.84990 0.85916 0.87492 0.90097 0.89144 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.96 71.98 0.65 -0.17 16 2 C 0.05 0.56 2.95 -13.35 -0.04 0.52 16 3 H 0.14 1.18 7.87 -2.39 -0.02 1.16 16 4 C 0.24 4.07 14.25 89.44 1.27 5.34 16 5 N -0.48 -11.47 18.54 20.00 0.37 -11.10 16 6 C -0.09 -1.41 4.75 -19.90 -0.09 -1.50 16 7 C -0.08 -0.93 8.80 22.33 0.20 -0.74 16 8 C -0.12 -1.37 10.03 22.23 0.22 -1.15 16 9 C -0.08 -1.30 9.54 22.53 0.21 -1.09 16 10 C -0.14 -3.63 5.87 -20.09 -0.12 -3.75 16 11 C 0.54 19.55 7.61 86.78 0.66 20.21 16 12 O -0.56 -26.43 13.83 -3.92 -0.05 -26.49 16 13 N -0.65 -22.39 5.28 -306.26 -1.62 -24.00 16 14 C 0.15 6.92 6.28 38.12 0.24 7.16 16 15 C -0.25 -10.45 9.97 22.59 0.23 -10.22 16 16 C -0.09 -4.23 10.01 22.20 0.22 -4.01 16 17 C -0.20 -10.75 8.69 22.75 0.20 -10.55 16 18 C 0.09 4.92 5.58 -21.31 -0.12 4.80 16 19 C -0.50 -28.88 9.06 23.46 0.21 -28.67 16 20 H 0.07 3.82 7.89 -2.91 -0.02 3.79 16 21 C 0.03 1.76 5.19 85.25 0.44 2.20 16 22 N -0.83 -44.94 10.82 21.82 0.24 -44.71 16 23 Si 0.98 40.07 29.59 68.60 2.03 42.10 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 25 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 26 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 27 C -0.24 -12.72 8.43 22.85 0.19 -12.52 16 28 C -0.06 -1.28 9.21 22.53 0.21 -1.07 16 29 H 0.07 0.34 7.38 -2.38 -0.02 0.32 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.15 1.10 7.55 -2.91 -0.02 1.08 16 33 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.15 1.81 6.41 -2.91 -0.02 1.79 16 35 H 0.42 10.17 6.87 -92.71 -0.64 9.53 16 36 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 37 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 38 H 0.11 6.00 6.07 -2.91 -0.02 5.98 16 39 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 40 H 0.09 5.16 6.28 -2.91 -0.02 5.14 16 41 H 0.13 3.12 7.53 -2.91 -0.02 3.10 16 Total: -1.00 -78.26 357.16 6.20 -72.07 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.45 Total: 27.34 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 4.78 Total: -35.22 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -1.01 Total: -79.81 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -78.26 6.20 -72.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148617280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.487 kcal (2) G-P(sol) polarization free energy of solvation -78.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds