Wall clock time and date at job start Tue Mar 31 2020 12:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36869 * 125.00842 * 2 1 4 4 C 1.34191 * 109.96062 * 180.20894 * 3 2 1 5 5 C 1.46581 * 106.91232 * 359.56876 * 4 3 2 6 6 C 1.39265 * 133.95536 * 180.27845 * 5 4 3 7 7 C 1.39165 * 119.39100 * 179.97438 * 6 5 4 8 8 C 1.47627 * 119.97716 * 180.02562 * 7 6 5 9 9 O 1.21587 * 119.99695 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00461 * 179.97438 * 8 7 6 11 11 C 1.39867 * 120.00137 * 174.88033 * 10 8 7 12 12 C 1.39310 * 119.94647 * 145.78120 * 11 10 8 13 13 C 1.38480 * 120.42665 * 180.02562 * 12 11 10 14 14 C 1.37687 * 120.32443 * 359.95067 * 13 12 11 15 15 C 1.40747 * 119.88747 * 0.02766 * 14 13 12 16 16 C 1.41404 * 120.20889 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00173 * 205.18277 * 16 15 14 18 18 C 1.39936 * 120.00049 * 25.18660 * 16 15 14 19 19 N 1.30824 * 119.99683 * 16.79591 * 18 16 15 20 20 Si 1.86798 * 119.99866 * 196.79452 * 18 16 15 21 21 H 1.48500 * 109.46904 * 90.00244 * 20 18 16 22 22 H 1.48508 * 109.46732 * 209.99783 * 20 18 16 23 23 H 1.48495 * 109.47246 * 329.99998 * 20 18 16 24 24 C 1.38256 * 119.94847 * 325.50883 * 11 10 8 25 25 C 1.40220 * 120.05109 * 0.02562 * 7 6 5 26 26 C 1.36313 * 120.66849 * 359.97438 * 25 7 6 27 27 C 1.37400 * 125.01170 * 179.73221 * 2 1 3 28 28 H 1.09001 * 109.46494 * 270.27197 * 1 2 3 29 29 H 1.09000 * 109.47033 * 30.27008 * 1 2 3 30 30 H 1.08997 * 109.46742 * 150.27576 * 1 2 3 31 31 H 1.07998 * 125.01632 * 0.07036 * 3 2 1 32 32 H 1.07990 * 126.54229 * 179.83849 * 4 3 2 33 33 H 1.07996 * 120.30857 * 359.96471 * 6 5 4 34 34 H 0.97002 * 119.99434 * 354.88950 * 10 8 7 35 35 H 1.08007 * 119.78369 * 359.97438 * 12 11 10 36 36 H 1.08004 * 119.83587 * 179.97438 * 13 12 11 37 37 H 1.07997 * 120.05586 * 180.02562 * 14 13 12 38 38 H 0.97004 * 120.00152 * 179.97438 * 19 18 16 39 39 H 1.07994 * 120.16591 * 359.97438 * 24 11 10 40 40 H 1.07994 * 119.66683 * 180.02562 * 25 7 6 41 41 H 1.07994 * 119.88418 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2503 1.1211 0.0000 4 6 3.5461 0.7727 -0.0046 5 6 3.5939 -0.6923 0.0027 6 6 4.6274 -1.6258 0.0073 7 6 4.3214 -2.9834 0.0147 8 6 5.4068 -3.9841 0.0202 9 8 6.5675 -3.6220 0.0179 10 7 5.1112 -5.2990 0.0279 11 6 6.1348 -6.2465 -0.0750 12 6 6.0284 -7.4611 0.5990 13 6 7.0362 -8.4062 0.5045 14 6 8.1548 -8.1557 -0.2581 15 6 8.2760 -6.9333 -0.9450 16 6 9.4222 -6.6687 -1.7298 17 1 9.7248 -5.6490 -1.9172 18 6 10.1645 -7.7281 -2.2636 19 7 9.6425 -8.9261 -2.3264 20 14 11.9004 -7.4317 -2.8864 21 1 12.8664 -7.6404 -1.7780 22 1 12.1995 -8.3807 -3.9889 23 1 12.0154 -6.0386 -3.3875 24 6 7.2480 -5.9786 -0.8499 25 6 2.9831 -3.4016 0.0169 26 6 1.9697 -2.4899 0.0124 27 6 2.2534 -1.1253 0.0053 28 1 -0.3632 0.0049 1.0277 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3633 -0.8924 -0.5095 31 1 1.8813 2.1361 0.0011 32 1 4.3923 1.4436 -0.0082 33 1 5.6568 -1.2992 0.0050 34 1 4.1884 -5.5881 0.1046 35 1 5.1547 -7.6666 1.1997 36 1 6.9440 -9.3445 1.0314 37 1 8.9379 -8.8960 -0.3290 38 1 10.1569 -9.6605 -2.6968 39 1 7.3293 -5.0394 -1.3766 40 1 2.7527 -4.4567 0.0231 41 1 0.9434 -2.8261 0.0138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149230985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:18 Heat of formation + Delta-G solvation = 53.118812 kcal Electronic energy + Delta-G solvation = -24713.519478 eV Core-core repulsion = 21137.641598 eV Total energy + Delta-G solvation = -3575.877880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.52822 -39.67579 -37.41033 -36.47090 -34.42528 -33.24618 -32.88971 -30.63850 -29.75885 -29.41309 -27.87885 -26.59908 -25.23842 -23.52925 -22.43537 -21.22500 -20.74127 -20.47538 -19.48560 -17.85171 -17.48568 -16.89484 -16.15089 -15.65764 -15.43905 -15.23096 -14.63217 -14.47252 -14.29086 -14.22777 -13.73770 -13.40606 -13.16674 -13.06482 -12.96463 -12.84429 -12.57193 -12.44196 -12.04296 -11.59223 -11.40141 -11.09632 -11.09066 -10.98412 -10.84166 -10.40672 -10.10171 -9.84980 -9.59781 -9.35578 -9.02256 -8.90053 -8.36592 -7.84962 -7.38679 -6.83981 -6.64942 -4.27435 0.95312 1.13799 2.50198 2.51990 2.77207 2.93121 3.13726 3.18985 3.26161 3.40646 3.70831 4.01975 4.09054 4.36400 4.44238 4.56968 4.71438 4.75618 4.81978 5.01978 5.03213 5.21986 5.30810 5.42956 5.55640 5.75296 5.79172 5.92412 6.21767 6.30504 6.38981 6.45644 6.53025 6.56147 6.84659 6.97117 7.02219 7.09631 7.12547 7.15405 7.32145 7.64518 7.80234 8.03723 8.16431 8.25273 8.34601 8.70005 8.82430 9.00849 9.05452 10.27738 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.002544 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.681376 B =11002.627363 C =11908.913938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.488 5.488 3 C 0.041 3.959 4 C -0.190 4.190 5 C -0.122 4.122 6 C 0.000 4.000 7 C -0.157 4.157 8 C 0.552 3.448 9 O -0.517 6.517 10 N -0.664 5.664 11 C 0.153 3.847 12 C -0.261 4.261 13 C -0.093 4.093 14 C -0.172 4.172 15 C 0.119 3.881 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.075 3.925 19 N -0.796 5.796 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.208 4.208 25 C -0.066 4.066 26 C -0.137 4.137 27 C 0.113 3.887 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.169 0.831 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.396 0.604 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.279 0.721 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.334 14.760 3.681 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.172 5.172 3 C -0.083 4.083 4 C -0.214 4.214 5 C -0.127 4.127 6 C -0.020 4.020 7 C -0.161 4.161 8 C 0.340 3.660 9 O -0.394 6.394 10 N -0.308 5.308 11 C 0.061 3.939 12 C -0.283 4.283 13 C -0.112 4.112 14 C -0.192 4.192 15 C 0.116 3.884 16 C -0.488 4.488 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.422 5.422 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.230 4.230 25 C -0.086 4.086 26 C -0.158 4.158 27 C 0.006 3.994 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.186 0.814 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.231 0.769 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.147 0.853 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.825 14.857 3.562 23.477 hybrid contribution 0.035 -0.118 -0.275 0.301 sum -17.791 14.739 3.287 23.336 Atomic orbital electron populations 1.21949 0.77175 1.04244 1.02999 1.43804 1.05942 1.04392 1.63016 1.21785 0.90457 0.90981 1.05102 1.21764 0.96122 0.92725 1.10825 1.19148 0.91856 0.93702 1.08002 1.20709 0.98987 0.90304 0.91981 1.19719 0.93100 0.93709 1.09618 1.18153 0.88541 0.82259 0.77020 1.90818 1.20256 1.80105 1.48186 1.43344 1.09693 1.05190 1.72593 1.17418 0.89720 0.88732 0.98011 1.20041 1.02112 0.96364 1.09766 1.20454 0.94643 0.96895 0.99172 1.21345 0.98392 0.99616 0.99834 1.17496 0.90926 0.90584 0.89363 1.19591 1.07771 0.94011 1.27386 0.90336 1.25900 0.99580 0.94543 0.94155 1.69831 1.36701 1.01431 1.34239 0.86305 0.82177 0.79425 0.78765 1.19296 1.20410 1.18596 1.20994 0.95010 1.01966 1.05017 1.20664 0.91254 0.99212 0.97447 1.19581 0.99511 0.88928 1.07765 1.18410 0.90199 0.88325 1.02443 0.91267 0.89903 0.90032 0.81419 0.83223 0.84327 0.76868 0.89319 0.89074 0.86326 0.91010 0.87569 0.85327 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.01 59.85 0.66 1.03 16 2 N -0.49 -4.34 3.17 -121.75 -0.39 -4.72 16 3 C 0.04 0.33 11.28 -16.73 -0.19 0.15 16 4 C -0.19 -1.97 11.09 -37.65 -0.42 -2.39 16 5 C -0.12 -1.60 6.36 -105.16 -0.67 -2.27 16 6 C 0.00 -0.01 9.64 -38.86 -0.37 -0.38 16 7 C -0.16 -2.44 5.87 -104.98 -0.62 -3.06 16 8 C 0.55 10.82 7.49 -12.43 -0.09 10.73 16 9 O -0.52 -12.29 14.08 5.29 0.07 -12.21 16 10 N -0.66 -12.66 5.28 -10.82 -0.06 -12.72 16 11 C 0.15 3.60 6.25 -83.79 -0.52 3.08 16 12 C -0.26 -5.93 9.97 -39.09 -0.39 -6.32 16 13 C -0.09 -2.22 10.02 -39.69 -0.40 -2.61 16 14 C -0.17 -4.63 8.69 -38.84 -0.34 -4.97 16 15 C 0.12 3.37 5.57 -106.85 -0.59 2.78 16 16 C -0.46 -12.87 9.05 -37.74 -0.34 -13.21 16 17 H 0.08 2.18 7.90 -52.49 -0.41 1.77 16 18 C 0.08 1.97 5.16 -17.35 -0.09 1.88 16 19 N -0.80 -21.13 10.94 55.55 0.61 -20.52 16 20 Si 0.91 19.52 29.59 -169.99 -5.03 14.49 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 24 C -0.21 -5.59 8.39 -38.68 -0.32 -5.92 16 25 C -0.07 -0.81 9.46 -39.53 -0.37 -1.18 16 26 C -0.14 -1.48 9.86 -39.85 -0.39 -1.87 16 27 C 0.11 1.32 6.80 -83.95 -0.57 0.75 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.33 8.05 -51.93 -0.42 -0.08 16 31 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 2.12 7.64 -52.49 -0.40 1.72 16 34 H 0.40 5.90 6.84 -40.82 -0.28 5.62 16 35 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 36 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 37 H 0.12 3.26 6.17 -52.49 -0.32 2.93 16 38 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 39 H 0.11 2.94 6.48 -52.49 -0.34 2.60 16 40 H 0.13 1.28 6.38 -52.49 -0.33 0.94 16 41 H 0.12 0.95 8.03 -52.49 -0.42 0.53 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -33.89 350.62 -10.15 -44.03 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -4.60 Total: 10.17 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -6.04 Total: -23.80 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.16 Total: -37.96 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.89 -10.15 -44.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149230985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.152 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds