Wall clock time and date at job start Tue Mar 31 2020 12:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36869 * 125.00842 * 2 1 4 4 C 1.34191 * 109.96062 * 180.20894 * 3 2 1 5 5 C 1.46581 * 106.91232 * 359.56876 * 4 3 2 6 6 C 1.39265 * 133.95536 * 180.27845 * 5 4 3 7 7 C 1.39165 * 119.39100 * 179.97438 * 6 5 4 8 8 C 1.47627 * 119.97716 * 180.02562 * 7 6 5 9 9 O 1.21587 * 119.99695 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00461 * 179.97438 * 8 7 6 11 11 C 1.39867 * 120.00137 * 174.88033 * 10 8 7 12 12 C 1.39310 * 119.94647 * 145.78120 * 11 10 8 13 13 C 1.38480 * 120.42665 * 180.02562 * 12 11 10 14 14 C 1.37687 * 120.32443 * 359.95067 * 13 12 11 15 15 C 1.40747 * 119.88747 * 0.02766 * 14 13 12 16 16 C 1.41404 * 120.20889 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00173 * 205.18277 * 16 15 14 18 18 C 1.39936 * 120.00049 * 25.18660 * 16 15 14 19 19 N 1.30824 * 119.99683 * 16.79591 * 18 16 15 20 20 Si 1.86798 * 119.99866 * 196.79452 * 18 16 15 21 21 H 1.48500 * 109.46904 * 90.00244 * 20 18 16 22 22 H 1.48508 * 109.46732 * 209.99783 * 20 18 16 23 23 H 1.48495 * 109.47246 * 329.99998 * 20 18 16 24 24 C 1.38256 * 119.94847 * 325.50883 * 11 10 8 25 25 C 1.40220 * 120.05109 * 0.02562 * 7 6 5 26 26 C 1.36313 * 120.66849 * 359.97438 * 25 7 6 27 27 C 1.37400 * 125.01170 * 179.73221 * 2 1 3 28 28 H 1.09001 * 109.46494 * 270.27197 * 1 2 3 29 29 H 1.09000 * 109.47033 * 30.27008 * 1 2 3 30 30 H 1.08997 * 109.46742 * 150.27576 * 1 2 3 31 31 H 1.07998 * 125.01632 * 0.07036 * 3 2 1 32 32 H 1.07990 * 126.54229 * 179.83849 * 4 3 2 33 33 H 1.07996 * 120.30857 * 359.96471 * 6 5 4 34 34 H 0.97002 * 119.99434 * 354.88950 * 10 8 7 35 35 H 1.08007 * 119.78369 * 359.97438 * 12 11 10 36 36 H 1.08004 * 119.83587 * 179.97438 * 13 12 11 37 37 H 1.07997 * 120.05586 * 180.02562 * 14 13 12 38 38 H 0.97004 * 120.00152 * 179.97438 * 19 18 16 39 39 H 1.07994 * 120.16591 * 359.97438 * 24 11 10 40 40 H 1.07994 * 119.66683 * 180.02562 * 25 7 6 41 41 H 1.07994 * 119.88418 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2503 1.1211 0.0000 4 6 3.5461 0.7727 -0.0046 5 6 3.5939 -0.6923 0.0027 6 6 4.6274 -1.6258 0.0073 7 6 4.3214 -2.9834 0.0147 8 6 5.4068 -3.9841 0.0202 9 8 6.5675 -3.6220 0.0179 10 7 5.1112 -5.2990 0.0279 11 6 6.1348 -6.2465 -0.0750 12 6 6.0284 -7.4611 0.5990 13 6 7.0362 -8.4062 0.5045 14 6 8.1548 -8.1557 -0.2581 15 6 8.2760 -6.9333 -0.9450 16 6 9.4222 -6.6687 -1.7298 17 1 9.7248 -5.6490 -1.9172 18 6 10.1645 -7.7281 -2.2636 19 7 9.6425 -8.9261 -2.3264 20 14 11.9004 -7.4317 -2.8864 21 1 12.8664 -7.6404 -1.7780 22 1 12.1995 -8.3807 -3.9889 23 1 12.0154 -6.0386 -3.3875 24 6 7.2480 -5.9786 -0.8499 25 6 2.9831 -3.4016 0.0169 26 6 1.9697 -2.4899 0.0124 27 6 2.2534 -1.1253 0.0053 28 1 -0.3632 0.0049 1.0277 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3633 -0.8924 -0.5095 31 1 1.8813 2.1361 0.0011 32 1 4.3923 1.4436 -0.0082 33 1 5.6568 -1.2992 0.0050 34 1 4.1884 -5.5881 0.1046 35 1 5.1547 -7.6666 1.1997 36 1 6.9440 -9.3445 1.0314 37 1 8.9379 -8.8960 -0.3290 38 1 10.1569 -9.6605 -2.6968 39 1 7.3293 -5.0394 -1.3766 40 1 2.7527 -4.4567 0.0231 41 1 0.9434 -2.8261 0.0138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149230985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:17 Heat of formation + Delta-G solvation = 33.636207 kcal Electronic energy + Delta-G solvation = -24714.364307 eV Core-core repulsion = 21137.641598 eV Total energy + Delta-G solvation = -3576.722709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.36433 -41.23579 -39.10885 -37.67040 -36.25540 -34.87880 -33.85627 -31.76722 -31.67727 -30.51012 -29.38071 -27.35407 -27.20209 -24.76405 -23.38869 -22.92531 -22.55154 -21.24246 -21.03046 -19.61176 -18.69305 -17.89123 -17.49047 -17.05748 -16.80154 -16.48596 -16.30370 -15.98574 -15.84445 -15.06174 -15.01691 -14.79033 -14.66552 -14.10073 -14.05970 -13.83493 -13.69597 -13.51793 -13.42365 -13.05823 -13.01409 -12.92985 -12.77249 -12.20461 -12.18375 -11.98440 -11.91536 -11.53317 -11.19064 -10.91841 -10.73484 -10.71444 -9.40488 -9.28643 -8.78393 -8.66563 -8.58337 -6.37644 -0.13742 0.21828 0.93419 1.02937 1.35570 1.49095 1.49619 1.75503 1.88368 1.97229 2.18622 2.22479 2.71729 2.93267 3.60047 3.68777 3.78588 3.87243 3.92973 4.11622 4.33764 4.45118 4.47619 4.52522 4.62133 4.63671 4.70852 4.77966 4.91924 5.02012 5.05189 5.09116 5.11576 5.20742 5.30176 5.31704 5.41304 5.62775 5.69010 5.76748 5.86887 6.07018 6.10283 6.13661 6.33643 6.37292 6.63081 6.68170 6.92765 7.00303 7.29095 8.33068 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.002544 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.681376 B =11002.627363 C =11908.913938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.483 5.483 3 C 0.065 3.935 4 C -0.225 4.225 5 C -0.147 4.147 6 C -0.021 4.021 7 C -0.177 4.177 8 C 0.549 3.451 9 O -0.572 6.572 10 N -0.652 5.652 11 C 0.158 3.842 12 C -0.250 4.250 13 C -0.090 4.090 14 C -0.197 4.197 15 C 0.089 3.911 16 C -0.503 4.503 17 H 0.060 0.940 18 C 0.038 3.962 19 N -0.821 5.821 20 Si 0.983 3.017 21 H -0.259 1.259 22 H -0.260 1.260 23 H -0.266 1.266 24 C -0.238 4.238 25 C -0.071 4.071 26 C -0.122 4.122 27 C 0.106 3.894 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.213 0.787 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.419 0.581 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.290 0.710 39 H 0.080 0.920 40 H 0.153 0.847 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.161 15.312 4.323 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.165 5.165 3 C -0.060 4.060 4 C -0.249 4.249 5 C -0.152 4.152 6 C -0.041 4.041 7 C -0.181 4.181 8 C 0.340 3.660 9 O -0.452 6.452 10 N -0.298 5.298 11 C 0.065 3.935 12 C -0.271 4.271 13 C -0.108 4.108 14 C -0.217 4.217 15 C 0.086 3.914 16 C -0.533 4.533 17 H 0.079 0.921 18 C -0.177 4.177 19 N -0.447 5.447 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.184 1.184 23 H -0.191 1.191 24 C -0.260 4.260 25 C -0.091 4.091 26 C -0.142 4.142 27 C -0.004 4.004 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.230 0.770 32 H 0.175 0.825 33 H 0.132 0.868 34 H 0.259 0.741 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.171 0.829 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.744 15.404 4.216 26.979 hybrid contribution 0.966 -0.116 -0.410 1.056 sum -20.778 15.288 3.806 26.076 Atomic orbital electron populations 1.22331 0.74202 1.06116 1.04524 1.44197 1.07690 1.03491 1.61155 1.22458 0.89516 0.92546 1.01434 1.22034 0.97974 0.91651 1.13197 1.19427 0.92340 0.94984 1.08439 1.20643 0.98735 0.91043 0.93633 1.19447 0.93336 0.92528 1.12798 1.18883 0.88904 0.82839 0.75345 1.90786 1.22898 1.80907 1.50626 1.43199 1.09951 1.04475 1.72170 1.17530 0.89593 0.89888 0.96489 1.20492 1.02954 0.95021 1.08591 1.20852 0.93558 0.98448 0.97968 1.21322 0.99751 0.99075 1.01568 1.17838 0.91566 0.91774 0.90217 1.19729 1.09710 0.94029 1.29803 0.92136 1.26701 1.03408 0.93860 0.93745 1.69851 1.38300 1.02163 1.34342 0.85211 0.76483 0.79253 0.78746 1.18364 1.18363 1.19062 1.20944 0.96874 1.01118 1.07081 1.20842 0.89730 1.00892 0.97609 1.19941 1.00849 0.88215 1.05213 1.18656 0.90051 0.89629 1.02026 0.89844 0.87335 0.89058 0.77026 0.82528 0.86763 0.74130 0.84795 0.85571 0.87574 0.89929 0.90191 0.82918 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.01 127.77 1.41 1.71 16 2 N -0.48 -6.74 3.17 -539.10 -1.71 -8.45 16 3 C 0.07 0.85 11.28 82.98 0.94 1.79 16 4 C -0.22 -4.49 11.09 23.52 0.26 -4.23 16 5 C -0.15 -3.88 6.36 -20.21 -0.13 -4.01 16 6 C -0.02 -0.67 9.64 22.74 0.22 -0.45 16 7 C -0.18 -5.71 5.87 -20.09 -0.12 -5.83 16 8 C 0.55 22.76 7.49 86.72 0.65 23.41 16 9 O -0.57 -29.72 14.08 -3.99 -0.06 -29.77 16 10 N -0.65 -25.05 5.28 -306.42 -1.62 -26.67 16 11 C 0.16 7.58 6.25 38.12 0.24 7.82 16 12 C -0.25 -10.92 9.97 22.59 0.23 -10.70 16 13 C -0.09 -4.21 10.02 22.20 0.22 -3.99 16 14 C -0.20 -10.97 8.69 22.75 0.20 -10.77 16 15 C 0.09 5.34 5.57 -21.31 -0.12 5.22 16 16 C -0.50 -30.35 9.05 23.46 0.21 -30.14 16 17 H 0.06 3.70 7.90 -2.91 -0.02 3.67 16 18 C 0.04 2.05 5.16 85.25 0.44 2.49 16 19 N -0.82 -44.84 10.94 21.82 0.24 -44.60 16 20 Si 0.98 41.36 29.59 68.60 2.03 43.39 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 C -0.24 -13.67 8.39 22.85 0.19 -13.48 16 25 C -0.07 -1.63 9.46 22.30 0.21 -1.42 16 26 C -0.12 -2.26 9.86 22.09 0.22 -2.04 16 27 C 0.11 2.21 6.80 39.19 0.27 2.48 16 28 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.09 0.28 8.05 -2.39 -0.02 0.26 16 31 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.16 2.70 8.06 -2.92 -0.02 2.68 16 33 H 0.11 4.06 7.64 -2.91 -0.02 4.03 16 34 H 0.42 11.80 6.84 -92.71 -0.63 11.16 16 35 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 36 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 37 H 0.11 6.06 6.17 -2.91 -0.02 6.04 16 38 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 39 H 0.08 4.89 6.48 -2.91 -0.02 4.87 16 40 H 0.15 2.60 6.38 -2.91 -0.02 2.58 16 41 H 0.16 1.68 8.03 -2.91 -0.02 1.66 16 Total: -1.00 -81.92 350.62 4.86 -77.06 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.44 Total: 31.18 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 5.53 Total: -42.15 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -3.09 Total: -79.72 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.06 Total: -29.77 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -81.92 4.86 -77.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149230985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.694 kcal (2) G-P(sol) polarization free energy of solvation -81.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds