Wall clock time and date at job start Tue Mar 31 2020 13:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86797 * 119.99550 * 2 1 4 4 H 1.48497 * 109.47296 * 274.64000 * 3 2 1 5 5 H 1.48501 * 109.47360 * 34.64217 * 3 2 1 6 6 H 1.48499 * 109.46965 * 154.64187 * 3 2 1 7 7 C 1.40023 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00215 * 197.00372 * 7 2 1 9 9 C 1.41547 * 119.99952 * 17.00795 * 7 2 1 10 10 C 1.41189 * 120.99274 * 203.27727 * 9 7 2 11 11 C 1.36563 * 119.14805 * 180.02562 * 10 9 7 12 12 N 1.32094 * 121.26587 * 359.97403 * 11 10 9 13 13 C 1.32528 * 122.21908 * 0.02568 * 12 11 10 14 14 N 1.39077 * 119.65739 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00016 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47125 * 179.97438 * 15 14 13 17 17 C 1.38139 * 120.03309 * 260.02195 * 16 15 14 18 18 C 1.38263 * 120.06432 * 179.97438 * 17 16 15 19 19 C 1.38303 * 120.13390 * 359.97438 * 18 17 16 20 20 C 1.38101 * 120.06405 * 359.73950 * 19 18 17 21 21 C 1.38813 * 120.03199 * 80.00303 * 16 15 14 22 22 N 1.40189 * 120.06526 * 0.02562 * 21 16 15 23 23 C 1.35228 * 126.04891 * 180.02562 * 22 21 16 24 24 C 1.35325 * 107.71009 * 179.97438 * 23 22 21 25 25 C 1.39930 * 107.93035 * 359.97438 * 24 23 22 26 26 N 1.30870 * 108.24188 * 0.02562 * 25 24 23 27 27 C 1.38745 * 120.68649 * 0.25394 * 13 12 11 28 28 H 0.97002 * 120.00257 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.42804 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.36596 * 180.02562 * 11 10 9 31 31 H 0.97003 * 120.00167 * 0.02562 * 14 13 12 32 32 H 1.08999 * 109.46882 * 60.00206 * 15 14 13 33 33 H 1.09000 * 109.47369 * 300.00019 * 15 14 13 34 34 H 1.07991 * 119.97050 * 359.97438 * 17 16 15 35 35 H 1.07996 * 119.93379 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.96873 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.03233 * 180.27851 * 20 19 18 38 38 H 1.07991 * 126.14667 * 359.71363 * 23 22 21 39 39 H 1.07998 * 126.03400 * 179.97438 * 24 23 22 40 40 H 1.07994 * 125.87554 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.66906 * 179.74494 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3908 2.1031 -1.3954 5 1 1.4913 2.6224 0.7959 6 1 3.5845 1.4139 0.5996 7 6 2.0077 -1.2126 -0.0005 8 1 3.0523 -1.2332 0.2730 9 6 1.3464 -2.4115 -0.3596 10 6 1.8274 -3.6655 0.0756 11 6 1.1602 -4.7985 -0.2936 12 7 0.0769 -4.7413 -1.0473 13 6 -0.4197 -3.5931 -1.4847 14 7 -1.5634 -3.5949 -2.2761 15 6 -2.1192 -2.3300 -2.7632 16 6 -3.3474 -2.6068 -3.5915 17 6 -3.2654 -2.6086 -4.9705 18 6 -4.3917 -2.8630 -5.7310 19 6 -5.6032 -3.1168 -5.1141 20 6 -5.6901 -3.1222 -3.7359 21 6 -4.5621 -2.8605 -2.9695 22 7 -4.6485 -2.8592 -1.5703 23 6 -5.7640 -3.0905 -0.8416 24 6 -5.4277 -2.9995 0.4660 25 6 -4.0621 -2.7035 0.5401 26 7 -3.5945 -2.6191 -0.6793 27 6 0.1927 -2.3896 -1.1662 28 1 -0.4850 0.8400 0.0004 29 1 2.7116 -3.7281 0.6926 30 1 1.5248 -5.7595 0.0377 31 1 -1.9936 -4.4337 -2.5048 32 1 -1.3763 -1.8186 -3.3753 33 1 -2.3870 -1.7001 -1.9149 34 1 -2.3206 -2.4112 -5.4550 35 1 -4.3252 -2.8635 -6.8089 36 1 -6.4814 -3.3148 -5.7108 37 1 -6.6355 -3.3249 -3.2547 38 1 -6.7474 -3.3047 -1.2329 39 1 -6.0954 -3.1319 1.3044 40 1 -3.4921 -2.5681 1.4473 41 1 -0.2099 -1.4543 -1.5262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158116673.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:12 Heat of formation + Delta-G solvation = 157.713297 kcal Electronic energy + Delta-G solvation = -26160.819170 eV Core-core repulsion = 22621.769599 eV Total energy + Delta-G solvation = -3539.049572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40775 -39.20947 -38.19456 -35.01990 -33.87021 -33.40243 -31.58420 -30.29907 -29.94343 -29.03467 -27.81258 -25.76355 -25.19619 -23.46567 -22.23864 -21.23956 -20.58663 -20.35902 -20.13615 -18.02191 -17.60384 -16.07956 -15.57536 -15.51545 -15.19739 -15.06810 -14.79405 -14.46291 -13.89310 -13.79840 -13.53850 -13.29131 -13.26118 -13.08316 -12.59292 -12.55493 -12.45279 -12.36382 -11.95665 -11.47139 -11.29642 -11.13282 -10.94243 -10.68947 -10.21759 -10.09764 -10.06380 -9.77016 -9.29529 -9.03715 -9.01225 -8.61291 -7.96480 -7.81417 -7.72227 -6.68919 -6.19827 -4.41635 0.83635 1.15684 2.31402 2.54924 2.90481 3.03459 3.10200 3.13921 3.21512 3.46321 3.62329 3.97194 4.48740 4.52410 4.65243 4.81959 4.85680 4.91618 4.99748 5.19599 5.31807 5.47077 5.67769 5.77752 5.79145 5.91463 6.03205 6.03841 6.17278 6.19533 6.32179 6.44595 6.62281 6.68100 6.86739 6.96074 7.00894 7.12536 7.20334 7.30271 7.43735 7.71745 7.90171 8.01702 8.14378 8.32763 8.58953 8.94486 8.98752 9.08222 9.93396 10.24573 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.004202 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.044320 B = 6662.647001 C = 6728.400051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.080 3.920 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.152 3.848 10 C -0.306 4.306 11 C 0.130 3.870 12 N -0.626 5.626 13 C 0.397 3.603 14 N -0.723 5.723 15 C 0.180 3.820 16 C -0.099 4.099 17 C -0.079 4.079 18 C -0.136 4.136 19 C -0.093 4.093 20 C -0.150 4.150 21 C 0.179 3.821 22 N -0.329 5.329 23 C 0.037 3.963 24 C -0.257 4.257 25 C 0.050 3.950 26 N -0.233 5.233 27 C -0.273 4.273 28 H 0.278 0.722 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.382 0.618 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.170 0.830 39 H 0.149 0.851 40 H 0.186 0.814 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.096 -1.584 -6.940 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.143 3.857 10 C -0.332 4.332 11 C -0.023 4.023 12 N -0.349 5.349 13 C 0.169 3.831 14 N -0.357 5.357 15 C 0.055 3.945 16 C -0.101 4.101 17 C -0.098 4.098 18 C -0.155 4.155 19 C -0.112 4.112 20 C -0.170 4.170 21 C 0.085 3.915 22 N -0.104 5.104 23 C -0.105 4.105 24 C -0.286 4.286 25 C -0.138 4.138 26 N -0.050 5.050 27 C -0.300 4.300 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.214 0.786 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.188 0.812 39 H 0.166 0.834 40 H 0.203 0.797 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.712 -1.788 -7.930 15.941 hybrid contribution -0.229 1.071 0.863 1.395 sum -13.941 -0.716 -7.067 15.646 Atomic orbital electron populations 1.69847 1.07416 1.28791 1.34385 1.25897 0.94690 1.01043 0.92249 0.86376 0.80708 0.80991 0.79076 1.19435 1.20354 1.18600 1.19557 0.97748 0.90983 1.40814 0.90471 1.17575 0.89951 0.91847 0.86283 1.21442 1.05819 0.94124 1.11768 1.21166 0.90900 0.96416 0.93801 1.66715 1.17662 1.28256 1.22317 1.18019 0.86085 0.89940 0.89070 1.43747 1.28605 1.05882 1.57459 1.20170 0.89377 0.88197 0.96743 1.19941 0.94226 1.01658 0.94296 1.21095 0.99119 0.97383 0.92185 1.21177 0.92664 1.01465 1.00163 1.20918 0.98093 0.98929 0.93293 1.20751 0.96915 1.05192 0.94189 1.17505 0.94765 1.00332 0.78865 1.46138 1.07196 1.53219 1.03859 1.22486 0.92776 1.03096 0.92142 1.21580 0.96673 1.14285 0.96040 1.24278 0.94290 0.98470 0.96752 1.78154 1.07343 1.20469 0.99002 1.21443 1.03181 0.95989 1.09397 0.91143 0.88775 0.86800 0.78586 0.93123 0.88245 0.84916 0.85515 0.85288 0.85452 0.81243 0.83351 0.79750 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.16 10.92 55.55 0.61 -19.55 16 2 C 0.08 2.04 5.20 -17.34 -0.09 1.95 16 3 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.45 9.12 -37.65 -0.34 -12.80 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 9 C 0.15 4.20 5.61 -106.55 -0.60 3.60 16 10 C -0.31 -7.90 9.85 -39.07 -0.38 -8.29 16 11 C 0.13 3.20 11.10 -18.04 -0.20 3.00 16 12 N -0.63 -16.02 10.37 -12.82 -0.13 -16.15 16 13 C 0.40 9.99 7.65 -154.98 -1.19 8.81 16 14 N -0.72 -15.38 4.93 -61.65 -0.30 -15.68 16 15 C 0.18 3.45 4.04 -5.19 -0.02 3.43 16 16 C -0.10 -1.53 5.26 -104.44 -0.55 -2.08 16 17 C -0.08 -1.00 9.66 -39.61 -0.38 -1.38 16 18 C -0.14 -1.38 10.04 -39.55 -0.40 -1.78 16 19 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 20 C -0.15 -1.66 9.46 -39.40 -0.37 -2.03 16 21 C 0.18 2.61 6.67 -83.59 -0.56 2.05 16 22 N -0.33 -5.19 3.80 -10.70 -0.04 -5.23 16 23 C 0.04 0.47 10.80 -17.09 -0.18 0.28 16 24 C -0.26 -3.42 10.81 -39.99 -0.43 -3.85 16 25 C 0.05 0.84 12.03 -17.33 -0.21 0.63 16 26 N -0.23 -4.41 8.03 30.64 0.25 -4.16 16 27 C -0.27 -7.35 8.02 -38.43 -0.31 -7.66 16 28 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 29 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 31 H 0.38 7.95 8.59 -40.82 -0.35 7.60 16 32 H 0.05 0.99 7.78 -51.93 -0.40 0.58 16 33 H 0.10 2.16 5.57 -51.93 -0.29 1.88 16 34 H 0.13 1.55 8.04 -52.49 -0.42 1.13 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 1.09 6.74 -52.49 -0.35 0.74 16 38 H 0.17 1.47 7.04 -52.49 -0.37 1.10 16 39 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.19 2.92 8.06 -52.49 -0.42 2.50 16 41 H 0.13 3.43 4.84 -52.49 -0.25 3.17 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -31.56 347.44 -10.56 -42.12 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -4.53 Total: 17.00 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -6.61 Total: -17.40 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.37 Total: -60.78 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.56 -10.56 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158116673.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.837 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds