Wall clock time and date at job start Tue Mar 31 2020 13:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86797 * 119.99550 * 2 1 4 4 H 1.48497 * 109.47296 * 274.64000 * 3 2 1 5 5 H 1.48501 * 109.47360 * 34.64217 * 3 2 1 6 6 H 1.48499 * 109.46965 * 154.64187 * 3 2 1 7 7 C 1.40023 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00215 * 197.00372 * 7 2 1 9 9 C 1.41547 * 119.99952 * 17.00795 * 7 2 1 10 10 C 1.41189 * 120.99274 * 203.27727 * 9 7 2 11 11 C 1.36563 * 119.14805 * 180.02562 * 10 9 7 12 12 N 1.32094 * 121.26587 * 359.97403 * 11 10 9 13 13 C 1.32528 * 122.21908 * 0.02568 * 12 11 10 14 14 N 1.39077 * 119.65739 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00016 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47125 * 179.97438 * 15 14 13 17 17 C 1.38139 * 120.03309 * 260.02195 * 16 15 14 18 18 C 1.38263 * 120.06432 * 179.97438 * 17 16 15 19 19 C 1.38303 * 120.13390 * 359.97438 * 18 17 16 20 20 C 1.38101 * 120.06405 * 359.73950 * 19 18 17 21 21 C 1.38813 * 120.03199 * 80.00303 * 16 15 14 22 22 N 1.40189 * 120.06526 * 0.02562 * 21 16 15 23 23 C 1.35228 * 126.04891 * 180.02562 * 22 21 16 24 24 C 1.35325 * 107.71009 * 179.97438 * 23 22 21 25 25 C 1.39930 * 107.93035 * 359.97438 * 24 23 22 26 26 N 1.30870 * 108.24188 * 0.02562 * 25 24 23 27 27 C 1.38745 * 120.68649 * 0.25394 * 13 12 11 28 28 H 0.97002 * 120.00257 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.42804 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.36596 * 180.02562 * 11 10 9 31 31 H 0.97003 * 120.00167 * 0.02562 * 14 13 12 32 32 H 1.08999 * 109.46882 * 60.00206 * 15 14 13 33 33 H 1.09000 * 109.47369 * 300.00019 * 15 14 13 34 34 H 1.07991 * 119.97050 * 359.97438 * 17 16 15 35 35 H 1.07996 * 119.93379 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.96873 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.03233 * 180.27851 * 20 19 18 38 38 H 1.07991 * 126.14667 * 359.71363 * 23 22 21 39 39 H 1.07998 * 126.03400 * 179.97438 * 24 23 22 40 40 H 1.07994 * 125.87554 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.66906 * 179.74494 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3908 2.1031 -1.3954 5 1 1.4913 2.6224 0.7959 6 1 3.5845 1.4139 0.5996 7 6 2.0077 -1.2126 -0.0005 8 1 3.0523 -1.2332 0.2730 9 6 1.3464 -2.4115 -0.3596 10 6 1.8274 -3.6655 0.0756 11 6 1.1602 -4.7985 -0.2936 12 7 0.0769 -4.7413 -1.0473 13 6 -0.4197 -3.5931 -1.4847 14 7 -1.5634 -3.5949 -2.2761 15 6 -2.1192 -2.3300 -2.7632 16 6 -3.3474 -2.6068 -3.5915 17 6 -3.2654 -2.6086 -4.9705 18 6 -4.3917 -2.8630 -5.7310 19 6 -5.6032 -3.1168 -5.1141 20 6 -5.6901 -3.1222 -3.7359 21 6 -4.5621 -2.8605 -2.9695 22 7 -4.6485 -2.8592 -1.5703 23 6 -5.7640 -3.0905 -0.8416 24 6 -5.4277 -2.9995 0.4660 25 6 -4.0621 -2.7035 0.5401 26 7 -3.5945 -2.6191 -0.6793 27 6 0.1927 -2.3896 -1.1662 28 1 -0.4850 0.8400 0.0004 29 1 2.7116 -3.7281 0.6926 30 1 1.5248 -5.7595 0.0377 31 1 -1.9936 -4.4337 -2.5048 32 1 -1.3763 -1.8186 -3.3753 33 1 -2.3870 -1.7001 -1.9149 34 1 -2.3206 -2.4112 -5.4550 35 1 -4.3252 -2.8635 -6.8089 36 1 -6.4814 -3.3148 -5.7108 37 1 -6.6355 -3.3249 -3.2547 38 1 -6.7474 -3.3047 -1.2329 39 1 -6.0954 -3.1319 1.3044 40 1 -3.4921 -2.5681 1.4473 41 1 -0.2099 -1.4543 -1.5262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158116673.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:11 Heat of formation + Delta-G solvation = 140.482228 kcal Electronic energy + Delta-G solvation = -26161.566365 eV Core-core repulsion = 22621.769599 eV Total energy + Delta-G solvation = -3539.796767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.50351 -40.40478 -39.94818 -36.65095 -35.80473 -34.45032 -32.95389 -32.22257 -31.02595 -30.18506 -29.44750 -27.79027 -26.66639 -24.43469 -23.71413 -22.91603 -22.25273 -21.55344 -21.30153 -19.57769 -18.98351 -17.47363 -17.44249 -16.63097 -16.53373 -16.41324 -16.08024 -15.90043 -15.72830 -15.03707 -14.92435 -14.89586 -14.66330 -14.37570 -14.29465 -13.85441 -13.65520 -13.58742 -13.55774 -13.12225 -12.87019 -12.61343 -12.40010 -12.02905 -11.91162 -11.78830 -11.37123 -11.28296 -11.17902 -10.55131 -10.04042 -9.93450 -9.85250 -9.76813 -8.99624 -8.63385 -8.09387 -6.49246 -0.13692 0.23648 1.07834 1.20439 1.30533 1.36594 1.50545 1.52184 1.60355 1.88567 2.19511 2.54507 2.85307 2.99189 3.49372 3.66569 3.88028 3.90416 3.95505 4.12931 4.27936 4.31218 4.33571 4.49874 4.62402 4.72223 4.80173 4.84117 4.92955 5.02297 5.03081 5.09180 5.16179 5.24469 5.27920 5.38755 5.44487 5.50025 5.69066 5.69758 5.84460 6.01979 6.16006 6.30264 6.39050 6.63845 6.75121 6.93705 6.96593 7.14234 7.94250 8.31598 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.004202 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.044320 B = 6662.647001 C = 6728.400051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.040 3.960 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.492 4.492 8 H 0.078 0.922 9 C 0.122 3.878 10 C -0.327 4.327 11 C 0.131 3.869 12 N -0.639 5.639 13 C 0.396 3.604 14 N -0.707 5.707 15 C 0.191 3.809 16 C -0.128 4.128 17 C -0.090 4.090 18 C -0.126 4.126 19 C -0.078 4.078 20 C -0.142 4.142 21 C 0.151 3.849 22 N -0.334 5.334 23 C 0.046 3.954 24 C -0.259 4.259 25 C 0.023 3.977 26 N -0.291 5.291 27 C -0.295 4.295 28 H 0.285 0.715 29 H 0.106 0.894 30 H 0.150 0.850 31 H 0.384 0.616 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.160 0.840 38 H 0.219 0.781 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.857 -1.729 -8.790 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.523 4.523 8 H 0.096 0.904 9 C 0.114 3.886 10 C -0.352 4.352 11 C -0.022 4.022 12 N -0.364 5.364 13 C 0.166 3.834 14 N -0.339 5.339 15 C 0.066 3.934 16 C -0.130 4.130 17 C -0.109 4.109 18 C -0.144 4.144 19 C -0.097 4.097 20 C -0.162 4.162 21 C 0.059 3.941 22 N -0.110 5.110 23 C -0.095 4.095 24 C -0.287 4.287 25 C -0.164 4.164 26 N -0.110 5.110 27 C -0.322 4.322 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.168 0.832 31 H 0.217 0.783 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.178 0.822 36 H 0.191 0.809 37 H 0.178 0.822 38 H 0.236 0.764 39 H 0.197 0.803 40 H 0.192 0.808 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.497 -1.945 -9.793 19.283 hybrid contribution 0.501 1.068 1.350 1.793 sum -15.996 -0.877 -8.443 18.109 Atomic orbital electron populations 1.69929 1.08960 1.30178 1.33824 1.26792 0.95467 1.04397 0.91099 0.85209 0.79293 0.75937 0.79361 1.18797 1.19131 1.17958 1.19836 0.98030 0.92093 1.42334 0.90392 1.18014 0.90634 0.93122 0.86812 1.21625 1.06779 0.94050 1.12788 1.21708 0.90167 0.97628 0.92669 1.66874 1.18301 1.28097 1.23088 1.18239 0.86775 0.89515 0.88850 1.43780 1.27208 1.06891 1.56047 1.19961 0.90762 0.86696 0.95949 1.19712 0.93132 1.05105 0.95078 1.21212 1.00571 0.97879 0.91216 1.21574 0.91822 0.99373 1.01648 1.21471 0.99131 0.96166 0.92894 1.21180 0.96712 1.03537 0.94786 1.17897 0.95697 1.01944 0.78610 1.46278 1.07308 1.53132 1.04312 1.23271 0.93640 1.00972 0.91649 1.21902 0.95236 1.14007 0.97601 1.24424 0.96380 0.99391 0.96198 1.78064 1.09949 1.22700 1.00247 1.21346 1.04010 0.96091 1.10781 0.90453 0.87607 0.83241 0.78342 0.94883 0.91131 0.85007 0.82224 0.80918 0.82232 0.76443 0.80349 0.80794 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.70 10.92 21.84 0.24 -43.47 16 2 C 0.04 2.08 5.20 85.29 0.44 2.52 16 3 Si 0.98 39.43 29.59 68.60 2.03 41.46 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.49 -27.87 9.12 23.52 0.21 -27.66 16 8 H 0.08 4.24 7.90 -2.91 -0.02 4.22 16 9 C 0.12 7.13 5.61 -21.12 -0.12 7.01 16 10 C -0.33 -17.51 9.85 22.60 0.22 -17.29 16 11 C 0.13 6.56 11.10 84.26 0.94 7.50 16 12 N -0.64 -33.73 10.37 -194.48 -2.02 -35.75 16 13 C 0.40 21.04 7.65 132.91 1.02 22.06 16 14 N -0.71 -31.89 4.93 -348.97 -1.72 -33.61 16 15 C 0.19 7.89 4.04 85.63 0.35 8.24 16 16 C -0.13 -4.04 5.26 -19.75 -0.10 -4.14 16 17 C -0.09 -2.21 9.66 22.25 0.22 -2.00 16 18 C -0.13 -2.09 10.04 22.29 0.22 -1.87 16 19 C -0.08 -1.09 10.04 22.25 0.22 -0.87 16 20 C -0.14 -2.58 9.46 22.39 0.21 -2.37 16 21 C 0.15 4.27 6.67 38.09 0.25 4.53 16 22 N -0.33 -10.53 3.80 -187.76 -0.71 -11.25 16 23 C 0.05 1.09 10.80 83.50 0.90 1.99 16 24 C -0.26 -6.73 10.81 22.01 0.24 -6.49 16 25 C 0.02 0.82 12.03 85.25 1.03 1.84 16 26 N -0.29 -11.72 8.03 -56.97 -0.46 -12.18 16 27 C -0.30 -16.95 8.02 23.01 0.18 -16.76 16 28 H 0.28 14.13 8.29 -92.71 -0.77 13.36 16 29 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 30 H 0.15 6.26 8.06 -2.91 -0.02 6.24 16 31 H 0.38 16.73 8.59 -92.71 -0.80 15.94 16 32 H 0.03 1.43 7.78 -2.39 -0.02 1.41 16 33 H 0.07 3.38 5.57 -2.39 -0.01 3.37 16 34 H 0.13 3.13 8.04 -2.92 -0.02 3.10 16 35 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.16 1.81 6.74 -2.91 -0.02 1.80 16 38 H 0.22 2.73 7.04 -2.91 -0.02 2.71 16 39 H 0.18 3.32 8.06 -2.91 -0.02 3.29 16 40 H 0.18 6.17 8.06 -2.91 -0.02 6.15 16 41 H 0.11 6.58 4.84 -2.91 -0.01 6.57 16 Total: -1.00 -74.96 347.44 4.08 -70.88 By element: Atomic # 1 Polarization: 47.39 SS G_CDS: 0.28 Total: 47.67 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 6.43 Total: -23.76 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -4.67 Total: -136.25 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -74.96 4.08 -70.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158116673.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.365 kcal (2) G-P(sol) polarization free energy of solvation -74.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds