Wall clock time and date at job start Tue Mar 31 2020 13:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28471 * 124.88609 * 2 1 4 4 C 1.31802 * 110.07361 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.51708 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00017 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99706 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72381 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.46748 * 180.02562 * 10 9 8 12 12 C 1.36939 * 119.99838 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99927 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99976 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99934 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99933 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47136 * 89.99691 * 16 14 12 18 18 H 1.48504 * 109.46915 * 209.99770 * 16 14 12 19 19 H 1.48503 * 109.47098 * 329.99624 * 16 14 12 20 20 C 1.41501 * 106.96561 * 0.22798 * 4 3 2 21 21 C 1.35033 * 124.88786 * 179.97438 * 2 1 3 22 22 C 1.50708 * 126.38324 * 359.97034 * 21 2 1 23 23 F 1.39898 * 109.47013 * 89.99214 * 22 21 2 24 24 F 1.39900 * 109.46946 * 209.99913 * 22 21 2 25 25 F 1.39905 * 109.46576 * 329.99370 * 22 21 2 26 26 H 1.08994 * 109.46929 * 90.02302 * 1 2 3 27 27 H 1.08999 * 109.46904 * 210.02620 * 1 2 3 28 28 H 1.09004 * 109.46669 * 330.02327 * 1 2 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 31 31 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 32 32 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 33 33 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 34 34 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 35 35 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 36 36 H 0.96992 * 119.99973 * 359.97438 * 11 10 9 37 37 H 0.96996 * 119.99959 * 179.97438 * 15 14 12 38 38 H 1.07995 * 127.24572 * 179.75423 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4741 0.7169 0.0006 5 6 4.6274 1.6399 0.0002 6 8 5.7598 1.1977 0.0003 7 7 4.4241 2.9722 -0.0002 8 6 5.5679 3.8876 0.0055 9 6 5.0647 5.3325 0.0107 10 6 6.2593 6.2885 0.0174 11 7 5.7775 7.6720 0.0230 12 6 6.6722 8.7086 0.0290 13 1 7.7331 8.5062 0.0291 14 6 6.2157 10.0195 0.0337 15 7 7.0758 11.0159 0.0400 16 14 4.3808 10.3696 0.0327 17 1 3.8927 10.4565 1.4325 18 1 4.1227 11.6563 -0.6624 19 1 3.6683 9.2742 -0.6729 20 6 3.5272 -0.6971 -0.0045 21 6 2.2374 -1.1076 0.0005 22 6 1.7535 -2.5349 0.0018 23 9 1.6030 -2.9774 -1.3168 24 9 2.6859 -3.3428 0.6615 25 9 0.5223 -2.6092 0.6620 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 3.5206 3.3251 0.0000 30 1 6.1712 3.7098 0.8959 31 1 6.1742 3.7172 -0.8841 32 1 4.4615 5.5103 -0.8795 33 1 4.4585 5.5030 0.9005 34 1 6.8621 6.1106 0.9079 35 1 6.8659 6.1182 -0.8721 36 1 4.8247 7.8537 0.0217 37 1 6.7568 11.9319 0.0429 38 1 4.4109 -1.3180 -0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158833347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:54 Heat of formation + Delta-G solvation = -88.857748 kcal Electronic energy + Delta-G solvation = -25763.054832 eV Core-core repulsion = 21228.314383 eV Total energy + Delta-G solvation = -4534.740449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.90785 -48.48439 -48.32597 -43.45364 -39.59029 -36.22209 -34.54981 -34.20006 -32.64213 -31.95052 -30.15242 -28.30404 -26.69360 -25.54768 -23.59120 -22.15633 -22.02768 -21.31014 -20.56277 -19.27977 -19.13343 -18.97174 -17.54362 -17.07384 -16.98628 -16.53226 -15.84094 -15.73830 -15.46620 -15.16382 -14.83085 -14.65647 -14.58545 -14.50547 -14.48303 -14.39254 -14.11371 -13.56656 -13.44580 -13.17069 -12.89887 -12.80782 -12.54686 -12.03982 -11.67478 -11.21185 -11.05201 -10.90047 -10.71833 -10.34553 -10.22347 -10.14804 -9.80872 -9.59983 -9.17368 -8.90746 -7.24874 -5.77209 -3.13313 0.77134 1.22425 1.40737 1.91993 2.78079 3.00914 3.05285 3.25246 3.36101 3.38453 3.44144 3.62578 3.70156 4.34839 4.39688 4.54815 4.58181 4.71609 4.75085 4.90929 4.98635 5.19239 5.49213 5.53173 5.57691 5.73140 5.80066 5.90539 5.94526 6.12723 6.29068 6.68195 6.71393 6.98116 7.36289 7.96405 7.99082 8.41606 9.20343 9.92433 10.11889 11.41136 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.029299 B = 0.002002 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.431753 B =13985.702275 C =14745.389373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.250 5.250 3 N -0.221 5.221 4 C -0.012 4.012 5 C 0.602 3.398 6 O -0.526 6.526 7 N -0.712 5.712 8 C 0.122 3.878 9 C -0.142 4.142 10 C 0.160 3.840 11 N -0.757 5.757 12 C -0.245 4.245 13 H 0.091 0.909 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.887 3.113 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.278 1.278 20 C -0.102 4.102 21 C -0.099 4.099 22 C 0.552 3.448 23 F -0.165 7.165 24 F -0.157 7.157 25 F -0.173 7.173 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.407 0.593 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.031 0.969 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.717 -31.363 -0.038 36.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.039 5.039 3 N -0.059 5.059 4 C -0.170 4.170 5 C 0.385 3.615 6 O -0.400 6.400 7 N -0.363 5.363 8 C -0.001 4.001 9 C -0.181 4.181 10 C 0.033 3.967 11 N -0.403 5.403 12 C -0.375 4.375 13 H 0.109 0.891 14 C -0.193 4.193 15 N -0.582 5.582 16 Si 0.717 3.283 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.131 4.131 21 C -0.223 4.223 22 C 0.496 3.504 23 F -0.147 7.147 24 F -0.138 7.138 25 F -0.155 7.155 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.242 0.758 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -17.504 -30.642 -0.041 35.289 hybrid contribution -1.480 -0.288 -0.031 1.508 sum -18.985 -30.929 -0.073 36.291 Atomic orbital electron populations 1.22764 0.71812 1.07421 1.05813 1.45309 1.08253 1.01258 1.49120 1.73673 1.03199 1.12565 1.16495 1.22056 0.90915 0.93711 1.10364 1.16693 0.86161 0.81610 0.77009 1.90840 1.22122 1.77022 1.50065 1.45905 1.11293 1.05195 1.73895 1.21437 0.87683 0.87900 1.03115 1.22002 1.00370 0.92936 1.02751 1.20500 0.93335 0.83739 0.99155 1.42689 1.05008 1.01280 1.91303 1.19075 0.90671 0.84730 1.43012 0.89115 1.24698 0.97129 0.95427 1.02060 1.69704 1.32549 0.98380 1.57538 0.86512 0.86748 0.77303 0.77732 1.21085 1.21721 1.20375 1.21656 0.95683 0.94221 1.01543 1.21052 0.93158 0.88693 1.19417 1.16986 0.74880 0.84229 0.74334 1.93285 1.95382 1.90544 1.35445 1.93272 1.65243 1.74527 1.80805 1.93128 1.44551 1.96482 1.81297 0.88638 0.87003 0.87223 0.75834 0.90710 0.90714 0.91241 0.91236 0.95076 0.95136 0.80687 0.93042 0.80344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.21 11.04 59.85 0.66 0.87 16 2 N -0.25 -1.89 3.70 -63.85 -0.24 -2.13 16 3 N -0.22 -2.13 11.67 33.42 0.39 -1.74 16 4 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 5 C 0.60 7.75 7.83 -12.39 -0.10 7.65 16 6 O -0.53 -8.31 16.93 5.30 0.09 -8.22 16 7 N -0.71 -8.25 5.55 -61.29 -0.34 -8.59 16 8 C 0.12 1.55 5.67 -4.04 -0.02 1.52 16 9 C -0.14 -2.00 5.44 -26.73 -0.15 -2.14 16 10 C 0.16 3.01 6.26 -4.04 -0.03 2.98 16 11 N -0.76 -17.96 5.41 -59.90 -0.32 -18.28 16 12 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 13 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 14 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 15 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 16 Si 0.89 22.02 27.74 -169.99 -4.71 17.30 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 20 C -0.10 -0.97 10.41 -39.37 -0.41 -1.38 16 21 C -0.10 -0.78 6.37 -82.21 -0.52 -1.31 16 22 C 0.55 3.63 3.43 36.01 0.12 3.75 16 23 F -0.17 -1.15 17.30 2.25 0.04 -1.11 16 24 F -0.16 -1.12 17.04 2.25 0.04 -1.09 16 25 F -0.17 -0.96 14.47 2.25 0.03 -0.93 16 26 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.11 0.25 5.44 -51.93 -0.28 -0.03 16 28 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.41 4.03 8.20 -40.82 -0.33 3.69 16 30 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.36 8.24 5.53 -40.82 -0.23 8.01 16 37 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 38 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -34.66 342.79 -4.61 -39.27 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.24 Total: 5.01 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.28 Total: 4.05 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.26 Total: -59.46 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.11 Total: -3.13 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.66 -4.61 -39.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158833347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.588 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds