Wall clock time and date at job start Tue Mar 31 2020 13:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28471 * 124.88609 * 2 1 4 4 C 1.31802 * 110.07361 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.51708 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00017 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99706 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72381 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.46748 * 180.02562 * 10 9 8 12 12 C 1.36939 * 119.99838 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99927 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99976 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99934 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99933 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47136 * 89.99691 * 16 14 12 18 18 H 1.48504 * 109.46915 * 209.99770 * 16 14 12 19 19 H 1.48503 * 109.47098 * 329.99624 * 16 14 12 20 20 C 1.41501 * 106.96561 * 0.22798 * 4 3 2 21 21 C 1.35033 * 124.88786 * 179.97438 * 2 1 3 22 22 C 1.50708 * 126.38324 * 359.97034 * 21 2 1 23 23 F 1.39898 * 109.47013 * 89.99214 * 22 21 2 24 24 F 1.39900 * 109.46946 * 209.99913 * 22 21 2 25 25 F 1.39905 * 109.46576 * 329.99370 * 22 21 2 26 26 H 1.08994 * 109.46929 * 90.02302 * 1 2 3 27 27 H 1.08999 * 109.46904 * 210.02620 * 1 2 3 28 28 H 1.09004 * 109.46669 * 330.02327 * 1 2 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 31 31 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 32 32 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 33 33 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 34 34 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 35 35 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 36 36 H 0.96992 * 119.99973 * 359.97438 * 11 10 9 37 37 H 0.96996 * 119.99959 * 179.97438 * 15 14 12 38 38 H 1.07995 * 127.24572 * 179.75423 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4741 0.7169 0.0006 5 6 4.6274 1.6399 0.0002 6 8 5.7598 1.1977 0.0003 7 7 4.4241 2.9722 -0.0002 8 6 5.5679 3.8876 0.0055 9 6 5.0647 5.3325 0.0107 10 6 6.2593 6.2885 0.0174 11 7 5.7775 7.6720 0.0230 12 6 6.6722 8.7086 0.0290 13 1 7.7331 8.5062 0.0291 14 6 6.2157 10.0195 0.0337 15 7 7.0758 11.0159 0.0400 16 14 4.3808 10.3696 0.0327 17 1 3.8927 10.4565 1.4325 18 1 4.1227 11.6563 -0.6624 19 1 3.6683 9.2742 -0.6729 20 6 3.5272 -0.6971 -0.0045 21 6 2.2374 -1.1076 0.0005 22 6 1.7535 -2.5349 0.0018 23 9 1.6030 -2.9774 -1.3168 24 9 2.6859 -3.3428 0.6615 25 9 0.5223 -2.6092 0.6620 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 3.5206 3.3251 0.0000 30 1 6.1712 3.7098 0.8959 31 1 6.1742 3.7172 -0.8841 32 1 4.4615 5.5103 -0.8795 33 1 4.4585 5.5030 0.9005 34 1 6.8621 6.1106 0.9079 35 1 6.8659 6.1182 -0.8721 36 1 4.8247 7.8537 0.0217 37 1 6.7568 11.9319 0.0429 38 1 4.4109 -1.3180 -0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158833347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:53 Heat of formation + Delta-G solvation = -114.544596 kcal Electronic energy + Delta-G solvation = -25764.168697 eV Core-core repulsion = 21228.314383 eV Total energy + Delta-G solvation = -4535.854314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.42543 -48.98114 -48.86382 -44.11251 -40.59906 -37.64711 -36.02329 -34.82231 -33.89407 -33.20470 -31.73969 -28.94221 -27.52019 -26.72203 -24.76298 -23.52489 -22.75636 -22.66331 -21.42880 -20.02770 -19.78843 -19.51374 -19.44908 -17.75757 -17.64572 -17.40075 -16.82339 -16.77575 -16.46473 -15.98353 -15.69615 -15.65995 -15.58376 -15.33573 -15.15875 -15.00926 -14.98806 -14.89752 -14.78769 -14.04207 -13.77813 -13.72099 -13.68906 -13.28896 -12.88067 -12.55857 -12.55222 -12.35253 -12.09796 -12.00690 -11.81074 -11.41908 -10.97177 -10.89757 -10.50097 -10.14128 -9.30884 -8.02560 -5.37393 0.11246 0.43182 0.86113 1.37564 1.38837 1.43974 1.51308 1.99727 2.13537 2.35397 2.49653 2.70219 3.03815 3.10606 3.28524 3.55373 3.73990 3.95817 4.08569 4.17306 4.21594 4.23525 4.24707 4.33168 4.56327 4.70666 4.72594 4.85978 4.91572 5.20022 5.21875 5.29704 5.33718 5.75613 6.21032 6.22172 6.51732 7.02275 7.07898 7.82778 8.03237 9.18879 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.029299 B = 0.002002 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.431753 B =13985.702275 C =14745.389373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.240 5.240 3 N -0.223 5.223 4 C -0.036 4.036 5 C 0.603 3.397 6 O -0.563 6.563 7 N -0.702 5.702 8 C 0.130 3.870 9 C -0.123 4.123 10 C 0.154 3.846 11 N -0.759 5.759 12 C -0.240 4.240 13 H 0.054 0.946 14 C -0.069 4.069 15 N -0.985 5.985 16 Si 0.963 3.037 17 H -0.276 1.276 18 H -0.296 1.296 19 H -0.246 1.246 20 C -0.115 4.115 21 C -0.095 4.095 22 C 0.561 3.439 23 F -0.166 7.166 24 F -0.160 7.160 25 F -0.164 7.164 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.417 0.583 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.368 0.632 37 H 0.258 0.742 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.138 -32.882 -0.076 39.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.030 5.030 3 N -0.062 5.062 4 C -0.192 4.192 5 C 0.387 3.613 6 O -0.441 6.441 7 N -0.353 5.353 8 C 0.006 3.994 9 C -0.161 4.161 10 C 0.027 3.973 11 N -0.405 5.405 12 C -0.371 4.371 13 H 0.072 0.928 14 C -0.260 4.260 15 N -0.635 5.635 16 Si 0.789 3.211 17 H -0.202 1.202 18 H -0.223 1.223 19 H -0.170 1.170 20 C -0.144 4.144 21 C -0.220 4.220 22 C 0.505 3.495 23 F -0.147 7.147 24 F -0.142 7.142 25 F -0.145 7.145 26 H 0.132 0.868 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.254 0.746 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.202 0.798 37 H 0.067 0.933 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -20.967 -32.210 -0.080 38.433 hybrid contribution -0.395 0.106 -0.014 0.410 sum -21.362 -32.105 -0.095 38.563 Atomic orbital electron populations 1.23190 0.69321 1.08818 1.07500 1.45745 1.09546 1.00644 1.47102 1.73624 1.02754 1.13287 1.16548 1.21771 0.90914 0.93895 1.12612 1.16917 0.86267 0.81936 0.76149 1.90814 1.23700 1.77655 1.51882 1.45751 1.11454 1.04775 1.73368 1.21231 0.87960 0.87401 1.02799 1.21769 0.98327 0.92121 1.03933 1.20663 0.95450 0.82449 0.98697 1.42669 1.04697 1.02047 1.91112 1.19053 0.90029 0.86338 1.41694 0.92786 1.25634 1.02891 0.95097 1.02420 1.69904 1.35321 0.98821 1.59489 0.85300 0.80039 0.77557 0.78212 1.20250 1.22319 1.17049 1.21793 0.96711 0.93858 1.02022 1.21154 0.92798 0.89471 1.18606 1.16745 0.75040 0.83397 0.74304 1.93288 1.95389 1.90460 1.35564 1.93270 1.65508 1.74513 1.80875 1.93148 1.43874 1.96397 1.81096 0.86770 0.85728 0.85792 0.74619 0.91138 0.91170 0.90090 0.89972 0.95405 0.95508 0.79809 0.93285 0.79967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.18 11.04 127.77 1.41 1.59 16 2 N -0.24 -3.07 3.70 -355.92 -1.32 -4.39 16 3 N -0.22 -3.86 11.67 -48.17 -0.56 -4.43 16 4 C -0.04 -0.74 7.13 42.46 0.30 -0.44 16 5 C 0.60 15.16 7.83 86.75 0.68 15.84 16 6 O -0.56 -17.91 16.93 -3.95 -0.07 -17.98 16 7 N -0.70 -15.24 5.55 -466.08 -2.59 -17.82 16 8 C 0.13 3.13 5.67 86.38 0.49 3.62 16 9 C -0.12 -3.17 5.44 30.59 0.17 -3.01 16 10 C 0.15 5.63 6.26 86.38 0.54 6.17 16 11 N -0.76 -35.04 5.41 -343.44 -1.86 -36.90 16 12 C -0.24 -13.86 10.47 84.03 0.88 -12.98 16 13 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 14 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 15 N -0.99 -63.65 13.97 21.65 0.30 -63.35 16 16 Si 0.96 44.81 27.74 68.60 1.90 46.72 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.25 -10.08 6.52 99.48 0.65 -9.43 16 20 C -0.12 -2.08 10.41 22.41 0.23 -1.85 16 21 C -0.09 -1.34 6.37 41.40 0.26 -1.08 16 22 C 0.56 6.28 3.43 71.24 0.24 6.53 16 23 F -0.17 -1.99 17.30 44.97 0.78 -1.21 16 24 F -0.16 -2.06 17.04 44.97 0.77 -1.30 16 25 F -0.16 -1.40 14.47 44.97 0.65 -0.75 16 26 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.12 0.16 5.44 -2.39 -0.01 0.15 16 28 H 0.12 0.15 8.14 -2.38 -0.02 0.13 16 29 H 0.42 7.32 8.20 -92.71 -0.76 6.56 16 30 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.37 15.77 5.53 -92.71 -0.51 15.25 16 37 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -75.73 342.79 3.49 -72.24 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -0.20 Total: 18.41 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.68 Total: 10.75 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -6.02 Total: -126.88 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.07 Total: -17.98 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 2.19 Total: -3.26 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.72 kcal Total: -75.73 3.49 -72.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158833347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.308 kcal (2) G-P(sol) polarization free energy of solvation -75.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds