Wall clock time and date at job start Tue Mar 31 2020 13:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86808 * 119.99877 * 2 1 4 4 H 1.48496 * 109.46765 * 275.39304 * 3 2 1 5 5 H 1.48497 * 109.47068 * 35.39108 * 3 2 1 6 6 H 1.48496 * 109.46982 * 155.39652 * 3 2 1 7 7 C 1.40035 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99628 * 341.60717 * 7 2 1 9 9 C 1.41532 * 120.00090 * 161.61273 * 7 2 1 10 10 C 1.41149 * 121.00196 * 330.86281 * 9 7 2 11 11 C 1.37620 * 119.00127 * 180.02562 * 10 9 7 12 12 N 1.32062 * 121.09339 * 359.73185 * 11 10 9 13 13 C 1.32428 * 122.24460 * 0.56459 * 12 11 10 14 14 N 1.39866 * 119.56798 * 179.70766 * 13 12 11 15 15 C 1.35987 * 126.37083 * 179.75509 * 14 13 12 16 16 N 1.30332 * 108.85147 * 179.97438 * 15 14 13 17 17 C 1.34880 * 109.30265 * 359.76792 * 16 15 14 18 18 C 1.48355 * 126.05791 * 180.27873 * 17 16 15 19 19 C 1.39364 * 120.12317 * 179.83947 * 18 17 16 20 20 C 1.38008 * 119.87506 * 179.70018 * 19 18 17 21 21 C 1.38329 * 120.12282 * 0.59799 * 20 19 18 22 22 C 1.50700 * 119.87996 * 179.69842 * 21 20 19 23 23 N 1.46894 * 109.47339 * 269.97840 * 22 21 20 24 24 C 1.38325 * 120.24866 * 359.67660 * 21 20 19 25 25 C 1.38011 * 120.12122 * 0.02562 * 24 21 20 26 26 C 1.35833 * 107.89115 * 0.37324 * 17 16 15 27 27 C 1.38489 * 120.85951 * 359.43425 * 13 12 11 28 28 H 0.96999 * 120.00240 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.49698 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.45585 * 180.02562 * 11 10 9 31 31 H 1.08002 * 125.57650 * 359.97438 * 15 14 13 32 32 H 1.08008 * 120.06367 * 359.97438 * 19 18 17 33 33 H 1.08000 * 119.94078 * 180.27075 * 20 19 18 34 34 H 1.09003 * 109.47027 * 29.97775 * 22 21 20 35 35 H 1.08997 * 109.47149 * 149.97616 * 22 21 20 36 36 H 1.00903 * 111.00248 * 179.97438 * 23 22 21 37 37 H 1.00895 * 110.99981 * 303.95419 * 23 22 21 38 38 H 1.08004 * 119.94374 * 180.02562 * 24 21 20 39 39 H 1.07999 * 120.06212 * 180.02562 * 25 24 21 40 40 H 1.07994 * 126.64783 * 179.89661 * 26 17 16 41 41 H 1.07998 * 120.60119 * 180.29946 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3749 2.1122 -1.3939 5 1 1.5004 2.6171 0.8108 6 1 3.5913 1.4100 0.5829 7 6 2.0076 -1.2127 -0.0005 8 1 1.5089 -2.1242 0.2942 9 6 3.3687 -1.2438 -0.3872 10 6 3.8836 -0.3091 -1.3111 11 6 5.2135 -0.3774 -1.6584 12 7 6.0079 -1.2953 -1.1384 13 6 5.5728 -2.1979 -0.2725 14 7 6.4620 -3.1488 0.2386 15 6 6.1672 -4.1298 1.1330 16 7 7.2466 -4.8201 1.3719 17 6 8.2662 -4.3193 0.6447 18 6 9.6599 -4.8277 0.6289 19 6 10.6188 -4.2150 -0.1756 20 6 11.9152 -4.6883 -0.1816 21 6 12.2606 -5.7764 0.5995 22 6 13.6762 -6.2929 0.5835 23 7 13.8137 -7.3127 -0.4648 24 6 11.3116 -6.3920 1.3956 25 6 10.0136 -5.9233 1.4142 26 6 7.7916 -3.2656 -0.0691 27 6 4.2502 -2.2089 0.1378 28 1 -0.4850 0.8400 0.0004 29 1 3.2435 0.4483 -1.7389 30 1 5.6152 0.3344 -2.3643 31 1 5.1973 -4.3079 1.5734 32 1 10.3490 -3.3686 -0.7899 33 1 12.6602 -4.2116 -0.8014 34 1 14.3612 -5.4694 0.3814 35 1 13.9133 -6.7333 1.5520 36 1 14.7550 -7.6746 -0.4961 37 1 13.1441 -8.0563 -0.3359 38 1 11.5868 -7.2410 2.0039 39 1 9.2735 -6.4044 2.0364 40 1 8.3527 -2.6435 -0.7505 41 1 3.9009 -2.9439 0.8479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163219267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:31 Heat of formation + Delta-G solvation = 110.663544 kcal Electronic energy + Delta-G solvation = -24344.012226 eV Core-core repulsion = 20802.922425 eV Total energy + Delta-G solvation = -3541.089802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92234 -39.28282 -38.74612 -35.21772 -34.51172 -33.39540 -31.77194 -31.21984 -30.86474 -29.45615 -28.15771 -26.32619 -24.99113 -23.53367 -22.53416 -22.18814 -21.16381 -20.46527 -19.65584 -18.60641 -16.97688 -16.58776 -15.98578 -15.63655 -15.36796 -15.23777 -15.05133 -14.87900 -14.60207 -14.49459 -13.88532 -13.62487 -13.38697 -13.26349 -13.13746 -13.00620 -12.91939 -12.54244 -12.34874 -11.85445 -11.45843 -11.17955 -11.13594 -10.99068 -10.96765 -10.28289 -10.10848 -9.88421 -9.66825 -9.19514 -8.97354 -8.86191 -8.69564 -8.56695 -8.04825 -7.50421 -7.34049 -5.03065 1.05702 1.49427 1.67077 2.22783 2.79517 2.90152 2.97388 3.03602 3.08451 3.24155 3.67981 4.05145 4.24341 4.47131 4.52985 4.68611 4.81247 4.98017 5.03499 5.04521 5.10078 5.31605 5.38696 5.42979 5.51056 5.61736 5.82478 5.84934 6.00012 6.10432 6.14979 6.16510 6.33968 6.36406 6.48623 6.57785 6.69731 6.74205 6.77856 6.82772 6.92582 7.05148 7.12049 7.28416 7.32303 7.74141 7.91677 8.09895 8.21105 8.34378 8.88990 9.65751 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.002282 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.798012 B =12268.743179 C =12769.601782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.424 4.424 8 H 0.099 0.901 9 C 0.121 3.879 10 C -0.288 4.288 11 C 0.144 3.856 12 N -0.588 5.588 13 C 0.337 3.663 14 N -0.390 5.390 15 C 0.199 3.801 16 N -0.479 5.479 17 C 0.008 3.992 18 C 0.018 3.982 19 C -0.116 4.116 20 C -0.095 4.095 21 C -0.100 4.100 22 C 0.104 3.896 23 N -0.847 5.847 24 C -0.115 4.115 25 C -0.100 4.100 26 C 0.004 3.996 27 C -0.258 4.258 28 H 0.293 0.707 29 H 0.115 0.885 30 H 0.138 0.862 31 H 0.211 0.789 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.340 0.660 37 H 0.343 0.657 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.178 0.822 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.116 -6.485 1.196 18.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.138 4.138 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.454 4.454 8 H 0.117 0.883 9 C 0.112 3.888 10 C -0.311 4.311 11 C -0.009 4.009 12 N -0.306 5.306 13 C 0.116 3.884 14 N -0.067 5.067 15 C -0.083 4.083 16 N -0.196 5.196 17 C -0.117 4.117 18 C 0.017 3.983 19 C -0.135 4.135 20 C -0.113 4.113 21 C -0.100 4.100 22 C -0.026 4.026 23 N -0.377 5.377 24 C -0.133 4.133 25 C -0.118 4.118 26 C -0.131 4.131 27 C -0.283 4.283 28 H 0.104 0.896 29 H 0.133 0.867 30 H 0.155 0.845 31 H 0.227 0.773 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.195 0.805 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.511 -6.427 0.967 18.678 hybrid contribution -0.760 0.866 0.433 1.231 sum 16.751 -5.560 1.400 17.705 Atomic orbital electron populations 1.69623 1.08266 1.31213 1.31264 1.26264 0.94836 1.02177 0.90527 0.86229 0.81230 0.79141 0.79336 1.18987 1.21138 1.16803 1.19563 0.92399 0.96584 1.36825 0.88277 1.17686 0.92915 0.89498 0.88691 1.21963 0.97114 1.06345 1.05705 1.21722 0.89972 0.93552 0.95646 1.66662 1.39476 1.08211 1.16292 1.17888 0.86537 0.89584 0.94428 1.43086 1.08156 1.23291 1.32165 1.25150 1.00039 0.88313 0.94816 1.70239 0.98284 1.27360 1.23762 1.19041 0.93293 0.97783 1.01629 1.17868 0.89312 0.94926 0.96211 1.21124 0.92727 1.00350 0.99266 1.20818 0.95896 0.96301 0.98331 1.19713 0.95094 0.96936 0.98291 1.20665 0.93774 0.95459 0.92712 1.58701 1.09673 1.18436 1.50846 1.20905 0.93074 0.99844 0.99513 1.21159 0.95969 0.95932 0.98782 1.22753 0.84443 1.01534 1.04343 1.21319 0.91032 1.07645 1.08334 0.89630 0.86687 0.84481 0.77274 0.85811 0.86018 0.90367 0.94880 0.84700 0.84474 0.86570 0.85246 0.80452 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.61 13.92 55.55 0.77 -17.83 16 2 C 0.09 2.00 5.43 -17.34 -0.09 1.90 16 3 Si 0.92 18.58 24.54 -169.99 -4.17 14.41 16 4 H -0.26 -5.12 6.70 56.52 0.38 -4.74 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.24 -5.20 6.85 56.52 0.39 -4.81 16 7 C -0.42 -10.25 9.63 -37.65 -0.36 -10.61 16 8 H 0.10 2.49 8.06 -52.49 -0.42 2.06 16 9 C 0.12 2.77 5.13 -106.55 -0.55 2.23 16 10 C -0.29 -6.24 7.29 -38.70 -0.28 -6.53 16 11 C 0.14 2.91 11.15 -17.68 -0.20 2.71 16 12 N -0.59 -12.48 9.85 -12.46 -0.12 -12.60 16 13 C 0.34 7.10 7.50 -154.39 -1.16 5.95 16 14 N -0.39 -7.44 2.98 -63.67 -0.19 -7.63 16 15 C 0.20 3.48 11.87 -89.65 -1.06 2.41 16 16 N -0.48 -8.57 10.92 -10.98 -0.12 -8.69 16 17 C 0.01 0.14 6.86 -83.23 -0.57 -0.43 16 18 C 0.02 0.27 5.88 -104.90 -0.62 -0.34 16 19 C -0.12 -1.52 9.56 -39.25 -0.38 -1.89 16 20 C -0.09 -1.09 9.68 -39.63 -0.38 -1.48 16 21 C -0.10 -1.08 5.40 -104.56 -0.56 -1.64 16 22 C 0.10 0.86 6.91 -4.98 -0.03 0.82 16 23 N -0.85 -6.54 9.61 -11.41 -0.11 -6.65 16 24 C -0.11 -1.30 9.68 -39.63 -0.38 -1.68 16 25 C -0.10 -1.36 9.70 -39.25 -0.38 -1.74 16 26 C 0.00 0.07 10.52 -16.12 -0.17 -0.10 16 27 C -0.26 -5.54 9.29 -38.50 -0.36 -5.90 16 28 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 29 H 0.12 2.41 4.76 -52.49 -0.25 2.16 16 30 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.21 3.02 7.01 -52.49 -0.37 2.66 16 32 H 0.12 1.48 7.01 -52.48 -0.37 1.11 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 36 H 0.34 1.87 9.08 -39.29 -0.36 1.51 16 37 H 0.34 2.51 8.98 -39.29 -0.35 2.15 16 38 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 39 H 0.13 1.78 7.86 -52.49 -0.41 1.37 16 40 H 0.18 2.89 7.28 -52.49 -0.38 2.50 16 41 H 0.12 2.28 6.73 -52.49 -0.35 1.93 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -27.40 349.35 -10.76 -38.16 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -4.55 Total: 11.88 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -7.54 Total: -16.31 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.23 Total: -53.40 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.17 Total: 14.41 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.40 -10.76 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163219267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.826 kcal (2) G-P(sol) polarization free energy of solvation -27.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds