Wall clock time and date at job start Tue Mar 31 2020 13:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00387 * 2 1 4 4 H 1.48499 * 109.46956 * 269.99467 * 3 2 1 5 5 H 1.48497 * 109.46956 * 29.99511 * 3 2 1 6 6 H 1.48502 * 109.47207 * 149.99666 * 3 2 1 7 7 C 1.37877 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00545 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47461 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00066 * 89.99920 * 10 9 7 12 12 C 1.50700 * 109.47380 * 270.00599 * 11 10 9 13 13 C 1.38677 * 120.41537 * 270.26287 * 12 11 10 14 14 C 1.38625 * 118.42126 * 180.22222 * 13 12 11 15 15 C 1.38223 * 119.15978 * 359.46985 * 14 13 12 16 16 N 1.31856 * 120.76567 * 0.30777 * 15 14 13 17 17 C 1.31884 * 121.72562 * 359.97275 * 16 15 14 18 18 C 1.38537 * 119.99962 * 269.99999 * 10 9 7 19 19 C 1.40248 * 119.18980 * 184.99566 * 18 10 9 20 20 C 1.36254 * 119.76291 * 180.02562 * 19 18 10 21 21 C 1.40921 * 118.23988 * 0.02562 * 20 19 18 22 22 C 1.40484 * 121.36407 * 180.02562 * 21 20 19 23 23 C 1.36764 * 118.15221 * 179.97438 * 22 21 20 24 24 C 1.39135 * 119.81097 * 0.02562 * 23 22 21 25 25 N 1.31199 * 121.79003 * 359.97438 * 24 23 22 26 26 C 1.33695 * 121.41928 * 0.02562 * 25 24 23 27 27 N 1.31761 * 119.19260 * 4.73296 * 18 10 9 28 28 H 0.96998 * 119.99597 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46909 * 60.00067 * 9 7 2 30 30 H 1.08999 * 109.47117 * 300.00722 * 9 7 2 31 31 H 1.08993 * 109.47314 * 149.99844 * 11 10 9 32 32 H 1.09007 * 109.46809 * 29.99984 * 11 10 9 33 33 H 1.08003 * 120.78603 * 359.97006 * 13 12 11 34 34 H 1.08002 * 120.42343 * 179.75479 * 14 13 12 35 35 H 1.08005 * 119.61951 * 180.28273 * 15 14 13 36 36 H 1.07998 * 119.61861 * 180.02562 * 17 16 15 37 37 H 1.08001 * 120.12227 * 0.02915 * 19 18 10 38 38 H 1.08005 * 120.87909 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.92595 * 359.97438 * 22 21 20 40 40 H 1.07999 * 120.10022 * 180.02562 * 23 22 21 41 41 H 1.08002 * 119.10703 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.2444 -3.2658 -1.2678 12 6 2.9887 -3.9760 -1.7036 13 6 2.7460 -5.2816 -1.3042 14 6 1.5800 -5.8968 -1.7330 15 6 0.6991 -5.1896 -2.5295 16 7 0.9604 -3.9474 -2.8861 17 6 2.0620 -3.3326 -2.5015 18 6 4.2302 -3.2288 1.2007 19 6 4.7968 -4.5116 1.1831 20 6 5.0280 -5.1650 2.3562 21 6 4.6832 -4.5174 3.5594 22 6 4.8935 -5.1302 4.8059 23 6 4.5351 -4.4419 5.9320 24 6 3.9792 -3.1715 5.8186 25 7 3.7849 -2.6037 4.6518 26 6 4.1130 -3.2218 3.5127 27 7 3.9165 -2.6276 2.3304 28 1 -0.4849 0.8401 -0.0004 29 1 3.8745 -0.6802 0.8912 30 1 3.8752 -0.6805 -0.8888 31 1 5.0462 -3.9925 -1.1373 32 1 4.5328 -2.5389 -2.0272 33 1 3.4506 -5.8081 -0.6775 34 1 1.3605 -6.9142 -1.4446 35 1 -0.2137 -5.6601 -2.8640 36 1 2.2416 -2.3143 -2.8133 37 1 5.0491 -4.9799 0.2432 38 1 5.4631 -6.1535 2.3637 39 1 5.3261 -6.1175 4.8731 40 1 4.6832 -4.8830 6.9066 41 1 3.7007 -2.6379 6.7153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164006469.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:20 Heat of formation + Delta-G solvation = 107.003729 kcal Electronic energy + Delta-G solvation = -26235.764004 eV Core-core repulsion = 22694.515500 eV Total energy + Delta-G solvation = -3541.248503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.93900 -41.03804 -39.42348 -37.01228 -34.91878 -34.69278 -33.49904 -32.52135 -31.89429 -31.19465 -29.64598 -27.14043 -25.63552 -24.59292 -24.36012 -23.70547 -22.94220 -22.13801 -19.47875 -19.04718 -18.48369 -18.11469 -17.78970 -17.18094 -16.61415 -16.57171 -16.37462 -15.78912 -15.70410 -15.15368 -15.03533 -14.69826 -14.58325 -14.42739 -14.19446 -13.90646 -13.78646 -13.63622 -13.44460 -13.18252 -12.79997 -12.57044 -12.52693 -12.21261 -12.08351 -11.84061 -11.67650 -11.06163 -10.75239 -10.68904 -10.48482 -10.20926 -9.85126 -9.74905 -9.62724 -8.42262 -8.25135 -6.25723 -0.38488 -0.02183 0.25275 0.47129 1.24786 1.28505 1.34348 1.44246 2.08359 2.20951 2.33817 3.00761 3.10706 3.21141 3.39766 3.66065 3.72051 3.85605 3.90362 3.95099 4.00841 4.08196 4.13458 4.17086 4.24083 4.40509 4.49751 4.62220 4.68626 4.76889 4.79099 4.92338 4.95998 4.99203 5.01319 5.12778 5.23892 5.34813 5.37188 5.45814 5.55862 5.80874 5.89503 6.03198 6.29879 6.52337 6.75127 6.93313 7.16959 7.34981 7.68764 8.91916 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.005801 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.173166 B = 4825.772047 C = 6813.600178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.939 3.061 4 H -0.254 1.254 5 H -0.291 1.291 6 H -0.258 1.258 7 C -0.494 4.494 8 H 0.022 0.978 9 C 0.236 3.764 10 N -0.580 5.580 11 C 0.166 3.834 12 C -0.157 4.157 13 C -0.068 4.068 14 C -0.177 4.177 15 C 0.076 3.924 16 N -0.526 5.526 17 C 0.118 3.882 18 C 0.435 3.565 19 C -0.225 4.225 20 C -0.001 4.001 21 C -0.225 4.225 22 C -0.017 4.017 23 C -0.209 4.209 24 C 0.150 3.850 25 N -0.548 5.548 26 C 0.322 3.678 27 N -0.592 5.592 28 H 0.261 0.739 29 H 0.021 0.979 30 H 0.041 0.959 31 H 0.127 0.873 32 H 0.101 0.899 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.134 0.866 37 H 0.174 0.826 38 H 0.196 0.804 39 H 0.184 0.816 40 H 0.178 0.822 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.580 -18.669 3.744 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.188 4.188 3 Si 0.763 3.237 4 H -0.178 1.178 5 H -0.217 1.217 6 H -0.182 1.182 7 C -0.533 4.533 8 H 0.041 0.959 9 C 0.113 3.887 10 N -0.289 5.289 11 C 0.043 3.957 12 C -0.160 4.160 13 C -0.094 4.094 14 C -0.196 4.196 15 C -0.081 4.081 16 N -0.235 5.235 17 C -0.039 4.039 18 C 0.185 3.815 19 C -0.248 4.248 20 C -0.026 4.026 21 C -0.233 4.233 22 C -0.043 4.043 23 C -0.229 4.229 24 C -0.023 4.023 25 N -0.261 5.261 26 C 0.082 3.918 27 N -0.315 5.315 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.144 0.856 32 H 0.119 0.881 33 H 0.180 0.820 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.151 0.849 37 H 0.191 0.809 38 H 0.213 0.787 39 H 0.201 0.799 40 H 0.196 0.804 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 14.107 -16.307 2.887 21.755 hybrid contribution 0.181 -0.118 0.642 0.677 sum 14.288 -16.425 3.529 22.054 Atomic orbital electron populations 1.70085 1.08195 1.27495 1.53393 1.25738 0.95412 1.02853 0.94841 0.85843 0.79213 0.79274 0.79346 1.17830 1.21678 1.18189 1.21332 0.91193 0.92277 1.48505 0.95922 1.19304 0.92775 0.79936 0.96704 1.46785 1.66377 1.13507 1.02257 1.20633 0.93549 0.97216 0.84303 1.21393 0.99852 0.95878 0.98899 1.21867 0.97680 0.93599 0.96239 1.22428 0.95131 1.02855 0.99200 1.23214 0.99847 0.89902 0.95094 1.67599 1.19855 1.11455 1.24596 1.22547 0.88900 0.98496 0.93923 1.18886 0.87738 0.89082 0.85788 1.21757 1.06730 0.94305 1.02021 1.21728 0.91946 1.00002 0.88954 1.19766 1.08480 0.97041 0.97996 1.21866 0.92637 1.00223 0.89572 1.22172 1.03232 0.95884 1.01649 1.23537 0.90853 0.93608 0.94289 1.67526 1.20905 1.38738 0.98882 1.19343 0.93126 0.89197 0.90094 1.67022 1.27497 1.39440 0.97510 0.92999 0.96072 0.94090 0.85562 0.88061 0.81959 0.81481 0.81273 0.84888 0.80853 0.78711 0.79853 0.80417 0.80350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.45 13.96 21.45 0.30 -63.15 16 2 C 0.01 0.50 5.47 84.65 0.46 0.97 16 3 Si 0.94 47.24 27.47 68.60 1.88 49.13 16 4 H -0.25 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.26 -12.58 6.54 99.48 0.65 -11.93 16 7 C -0.49 -29.41 9.39 25.60 0.24 -29.17 16 8 H 0.02 1.54 7.83 -2.91 -0.02 1.52 16 9 C 0.24 11.53 4.24 85.64 0.36 11.89 16 10 N -0.58 -22.82 2.54 -712.46 -1.81 -24.63 16 11 C 0.17 4.69 5.43 85.63 0.46 5.15 16 12 C -0.16 -5.04 5.48 -19.77 -0.11 -5.14 16 13 C -0.07 -1.78 9.60 22.47 0.22 -1.56 16 14 C -0.18 -4.56 10.11 22.36 0.23 -4.33 16 15 C 0.08 2.43 11.18 84.69 0.95 3.37 16 16 N -0.53 -21.25 10.36 -195.84 -2.03 -23.28 16 17 C 0.12 4.67 10.07 84.67 0.85 5.53 16 18 C 0.43 16.86 7.36 133.68 0.98 17.85 16 19 C -0.23 -5.71 8.39 22.30 0.19 -5.53 16 20 C 0.00 -0.02 9.88 22.46 0.22 0.20 16 21 C -0.23 -6.36 5.74 -21.24 -0.12 -6.48 16 22 C -0.02 -0.32 9.89 22.47 0.22 -0.10 16 23 C -0.21 -3.96 10.03 22.14 0.22 -3.73 16 24 C 0.15 4.16 11.14 85.00 0.95 5.11 16 25 N -0.55 -22.56 10.43 -193.91 -2.02 -24.59 16 26 C 0.32 13.30 7.62 134.99 1.03 14.33 16 27 N -0.59 -28.14 9.16 -191.45 -1.75 -29.89 16 28 H 0.26 16.45 8.31 -92.71 -0.77 15.68 16 29 H 0.02 1.16 6.48 -2.38 -0.02 1.14 16 30 H 0.04 1.84 7.32 -2.39 -0.02 1.82 16 31 H 0.13 2.33 5.87 -2.39 -0.01 2.32 16 32 H 0.10 2.62 7.85 -2.38 -0.02 2.60 16 33 H 0.16 2.97 6.28 -2.91 -0.02 2.95 16 34 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 35 H 0.17 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.13 5.60 8.06 -2.91 -0.02 5.57 16 37 H 0.17 2.83 4.78 -2.91 -0.01 2.82 16 38 H 0.20 1.69 8.06 -2.91 -0.02 1.66 16 39 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.18 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -95.89 346.82 2.93 -92.96 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.01 Total: 15.09 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 7.36 Total: 8.36 kcal Atomic # 7 Polarization: -158.22 SS G_CDS: -7.32 Total: -165.54 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.88 Total: 49.13 kcal Total: -95.89 2.93 -92.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164006469.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.962 kcal (2) G-P(sol) polarization free energy of solvation -95.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds