Wall clock time and date at job start Tue Mar 31 2020 13:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86800 * 120.00213 * 2 1 4 4 H 1.48501 * 109.47143 * 240.00064 * 3 2 1 5 5 H 1.48503 * 109.47145 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47293 * 120.00088 * 3 2 1 7 7 C 1.40048 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00325 * 168.36667 * 7 2 1 9 9 C 1.40926 * 119.99623 * 348.36296 * 7 2 1 10 10 C 1.40346 * 120.70095 * 329.62775 * 9 7 2 11 11 C 1.40175 * 118.11152 * 180.02562 * 10 9 7 12 12 C 1.40865 * 120.58953 * 179.97438 * 11 10 9 13 13 C 1.36113 * 119.70725 * 180.02562 * 12 11 10 14 14 C 1.39316 * 120.78000 * 0.02562 * 13 12 11 15 15 C 1.36261 * 121.08350 * 0.02562 * 14 13 12 16 16 C 1.40484 * 119.96069 * 359.95875 * 15 14 13 17 17 N 1.33938 * 120.14037 * 180.25060 * 16 15 14 18 18 C 1.31277 * 121.99169 * 180.31656 * 17 16 15 19 19 N 1.38781 * 119.74970 * 179.75689 * 18 17 16 20 20 C 1.36618 * 119.88935 * 126.75526 * 19 18 17 21 21 C 1.34880 * 120.71914 * 180.27513 * 20 19 18 22 22 C 1.40636 * 120.45643 * 359.49607 * 21 20 19 23 23 C 1.50700 * 120.12321 * 180.23299 * 22 21 20 24 24 N 1.46897 * 109.47370 * 270.26597 * 23 22 21 25 25 C 1.35827 * 119.74799 * 0.50180 * 22 21 20 26 26 C 1.37812 * 119.89304 * 306.77535 * 19 18 17 27 27 N 1.31577 * 120.22501 * 359.95985 * 26 19 18 28 28 H 0.97001 * 120.00347 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.94061 * 0.04066 * 10 9 7 30 30 H 1.08001 * 120.14386 * 0.04276 * 12 11 10 31 31 H 1.08002 * 119.61007 * 179.97438 * 13 12 11 32 32 H 1.08000 * 119.46003 * 180.02562 * 14 13 12 33 33 H 1.08003 * 120.02078 * 180.02562 * 15 14 13 34 34 H 1.08003 * 119.64013 * 359.97438 * 20 19 18 35 35 H 1.07997 * 119.77110 * 179.74658 * 21 20 19 36 36 H 1.09001 * 109.47147 * 30.27103 * 23 22 21 37 37 H 1.09004 * 109.47078 * 150.26576 * 23 22 21 38 38 H 1.00901 * 110.99663 * 56.05115 * 24 23 22 39 39 H 1.00897 * 110.99882 * 180.02562 * 24 23 22 40 40 H 1.08007 * 120.34437 * 179.77969 * 25 22 21 41 41 H 0.97001 * 120.00054 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0956 1.6963 -1.2125 5 1 1.2769 2.7465 0.0006 6 1 3.0957 1.6964 1.2124 7 6 2.0081 -1.2128 -0.0005 8 1 3.0714 -1.2224 -0.1891 9 6 1.3252 -2.4208 0.2451 10 6 0.1921 -2.4479 1.0729 11 6 -0.4449 -3.6791 1.2805 12 6 -1.5859 -3.7663 2.1020 13 6 -2.1900 -4.9712 2.2917 14 6 -1.6930 -6.1216 1.6829 15 6 -0.5910 -6.0742 0.8830 16 6 0.0624 -4.8506 0.6606 17 7 1.1430 -4.7990 -0.1291 18 6 1.7850 -3.6768 -0.3569 19 7 2.9028 -3.6776 -1.1794 20 6 2.9703 -2.8160 -2.2374 21 6 4.0462 -2.8064 -3.0507 22 6 5.1246 -3.6783 -2.8166 23 6 6.3253 -3.6577 -3.7270 24 7 6.1167 -4.6003 -4.8342 25 6 5.0772 -4.5429 -1.7701 26 6 3.9410 -4.5480 -0.9264 27 7 3.8763 -5.3776 0.0928 28 1 -0.4851 0.8400 0.0004 29 1 -0.1785 -1.5456 1.5365 30 1 -1.9797 -2.8810 2.5791 31 1 -3.0644 -5.0364 2.9222 32 1 -2.1894 -7.0665 1.8478 33 1 -0.2206 -6.9766 0.4193 34 1 2.1510 -2.1384 -2.4275 35 1 4.0817 -2.1216 -3.8851 36 1 6.4613 -2.6526 -4.1262 37 1 7.2127 -3.9483 -3.1646 38 1 5.2645 -4.3905 -5.3319 39 1 6.9089 -4.6052 -5.4590 40 1 5.8984 -5.2193 -1.5835 41 1 4.6091 -5.9886 0.2681 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167692658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:21 Heat of formation + Delta-G solvation = 94.223004 kcal Electronic energy + Delta-G solvation = -26053.362782 eV Core-core repulsion = 22511.560065 eV Total energy + Delta-G solvation = -3541.802717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.92682 -40.59630 -37.97022 -36.60403 -35.88257 -35.00873 -33.52274 -33.38437 -31.15461 -30.44744 -29.52961 -27.48652 -26.71231 -24.61422 -24.12430 -23.46996 -22.56461 -21.74074 -19.95519 -19.19666 -18.27731 -17.79800 -17.56418 -17.42283 -16.62402 -16.49044 -16.00827 -15.79505 -15.35256 -15.21142 -14.96433 -14.84333 -14.58266 -14.49403 -14.19053 -13.71107 -13.60344 -13.47067 -13.08465 -12.98006 -12.81340 -12.36847 -12.31553 -12.21432 -12.09872 -11.78451 -11.54204 -11.27639 -11.03726 -10.74367 -10.29033 -10.01215 -9.54386 -9.32323 -8.94807 -8.76742 -8.12998 -6.48297 -0.26207 0.14036 0.36475 1.10633 1.34785 1.40353 1.50475 1.56879 1.70946 2.11042 2.18937 2.70777 2.90795 3.59913 3.68168 3.70208 3.91092 4.03102 4.08509 4.11754 4.24113 4.31158 4.40806 4.42990 4.59555 4.63198 4.66816 4.73807 4.77842 4.92154 5.02753 5.12008 5.27746 5.33425 5.41295 5.48497 5.54641 5.65649 5.72007 5.82299 5.90692 6.02056 6.22824 6.24727 6.29503 6.48497 6.61074 6.66798 6.69908 7.34463 7.62632 8.18561 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.005659 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.462636 B = 4946.642038 C = 7383.764701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.044 3.956 3 Si 0.980 3.020 4 H -0.246 1.246 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.051 3.949 10 C -0.188 4.188 11 C -0.067 4.067 12 C -0.142 4.142 13 C -0.104 4.104 14 C -0.152 4.152 15 C -0.083 4.083 16 C 0.022 3.978 17 N -0.465 5.465 18 C 0.276 3.724 19 N -0.413 5.413 20 C 0.160 3.840 21 C -0.238 4.238 22 C 0.018 3.982 23 C 0.105 3.895 24 N -0.853 5.853 25 C -0.231 4.231 26 C 0.408 3.592 27 N -0.813 5.813 28 H 0.296 0.704 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.118 0.882 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.348 0.652 39 H 0.357 0.643 40 H 0.147 0.853 41 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 0.522 -6.960 8.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.175 4.175 3 Si 0.800 3.200 4 H -0.169 1.169 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.483 4.483 8 H 0.100 0.900 9 C 0.044 3.956 10 C -0.214 4.214 11 C -0.070 4.070 12 C -0.161 4.161 13 C -0.122 4.122 14 C -0.171 4.171 15 C -0.101 4.101 16 C -0.099 4.099 17 N -0.174 5.174 18 C 0.030 3.970 19 N -0.105 5.105 20 C 0.035 3.965 21 C -0.264 4.264 22 C 0.011 3.989 23 C -0.025 4.025 24 N -0.386 5.386 25 C -0.256 4.256 26 C 0.138 3.862 27 N -0.445 5.445 28 H 0.107 0.893 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.136 0.864 34 H 0.176 0.824 35 H 0.190 0.810 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.161 0.839 39 H 0.172 0.828 40 H 0.164 0.836 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.627 -0.961 -5.886 7.548 hybrid contribution 0.864 1.914 -0.338 2.127 sum 5.492 0.953 -6.224 8.355 Atomic orbital electron populations 1.69789 1.08950 1.31496 1.32576 1.26704 0.95486 1.04092 0.91193 0.85250 0.78897 0.75341 0.80517 1.16923 1.18941 1.19279 1.19501 0.96023 0.90412 1.42391 0.90036 1.19401 0.94065 0.91411 0.90741 1.21398 1.00623 0.95769 1.03647 1.19027 0.96543 0.93837 0.97553 1.21142 0.95571 0.99138 1.00220 1.21079 1.00079 0.91741 0.99310 1.20900 0.97062 0.99730 0.99453 1.20781 0.95769 0.95020 0.98579 1.18618 0.95122 0.94517 1.01687 1.66839 1.06602 1.28705 1.15234 1.20011 0.90212 0.90646 0.96168 1.40617 1.13490 1.31803 1.24558 1.22117 1.00207 0.90000 0.84224 1.20624 0.94114 1.07009 1.04667 1.20099 0.95030 0.90889 0.92891 1.20740 0.93992 0.95891 0.91921 1.58602 1.09128 1.55312 1.15545 1.21758 0.98272 1.05829 0.99753 1.19119 0.86091 0.88940 0.92010 1.69781 1.36522 1.15196 1.23051 0.89274 0.85843 0.85632 0.82957 0.83088 0.86400 0.82367 0.81044 0.91892 0.89420 0.83918 0.82777 0.83581 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.70 11.04 21.84 0.24 -37.46 16 2 C 0.04 1.95 5.24 85.29 0.45 2.39 16 3 Si 0.98 33.81 29.58 68.60 2.03 35.84 16 4 H -0.25 -7.86 7.11 99.48 0.71 -7.15 16 5 H -0.27 -8.67 7.11 99.48 0.71 -7.97 16 6 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.45 -22.16 7.14 23.37 0.17 -22.00 16 8 H 0.08 3.90 7.16 -2.91 -0.02 3.88 16 9 C 0.05 2.67 5.59 -19.90 -0.11 2.56 16 10 C -0.19 -9.89 8.49 23.25 0.20 -9.70 16 11 C -0.07 -3.34 5.74 -21.26 -0.12 -3.47 16 12 C -0.14 -5.80 9.75 22.42 0.22 -5.58 16 13 C -0.10 -3.53 9.96 22.03 0.22 -3.31 16 14 C -0.15 -5.23 9.95 22.07 0.22 -5.01 16 15 C -0.08 -3.52 9.95 22.36 0.22 -3.30 16 16 C 0.02 1.13 6.60 40.28 0.27 1.39 16 17 N -0.46 -24.86 9.45 -180.61 -1.71 -26.57 16 18 C 0.28 14.35 6.21 135.46 0.84 15.19 16 19 N -0.41 -18.63 2.66 -343.98 -0.91 -19.55 16 20 C 0.16 5.96 8.42 83.18 0.70 6.67 16 21 C -0.24 -6.71 9.67 22.08 0.21 -6.50 16 22 C 0.02 0.48 5.39 -19.84 -0.11 0.37 16 23 C 0.10 1.92 6.92 85.56 0.59 2.51 16 24 N -0.85 -14.38 9.61 -190.01 -1.83 -16.21 16 25 C -0.23 -7.70 9.52 22.52 0.21 -7.49 16 26 C 0.41 17.64 7.42 134.30 1.00 18.64 16 27 N -0.81 -38.17 12.78 -55.02 -0.70 -38.87 16 28 H 0.30 12.48 8.30 -92.71 -0.77 11.72 16 29 H 0.12 6.55 6.47 -2.91 -0.02 6.53 16 30 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 31 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 33 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 34 H 0.16 5.96 7.36 -2.91 -0.02 5.94 16 35 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 37 H 0.09 1.51 8.08 -2.39 -0.02 1.49 16 38 H 0.35 5.59 8.99 -89.69 -0.81 4.78 16 39 H 0.36 4.10 9.08 -89.70 -0.81 3.29 16 40 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.34 14.07 8.75 -92.71 -0.81 13.26 16 Total: -1.00 -67.80 349.02 0.98 -66.83 By element: Atomic # 1 Polarization: 53.92 SS G_CDS: -1.32 Total: 52.60 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 5.17 Total: -16.62 kcal Atomic # 7 Polarization: -133.74 SS G_CDS: -4.91 Total: -138.65 kcal Atomic # 14 Polarization: 33.81 SS G_CDS: 2.03 Total: 35.84 kcal Total: -67.80 0.98 -66.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167692658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.051 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds