Wall clock time and date at job start Tue Mar 31 2020 13:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99831 * 2 1 4 4 H 1.48503 * 109.47322 * 270.00201 * 3 2 1 5 5 H 1.48497 * 109.47325 * 30.00356 * 3 2 1 6 6 H 1.48504 * 109.47040 * 150.00305 * 3 2 1 7 7 C 1.37881 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00029 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99934 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.46738 * 185.48232 * 9 7 2 11 11 C 1.46955 * 110.99851 * 295.49724 * 10 9 7 12 12 C 1.53054 * 109.36400 * 183.19390 * 11 10 9 13 13 N 1.46963 * 109.36202 * 301.59786 * 12 11 10 14 14 C 1.46901 * 110.99909 * 183.18602 * 13 12 11 15 15 H 1.08995 * 110.73426 * 294.99817 * 14 13 12 16 16 C 1.54345 * 110.99194 * 171.46404 * 14 13 12 17 17 C 1.51372 * 105.17019 * 215.35869 * 16 14 13 18 18 C 1.38514 * 130.38217 * 197.21064 * 17 16 14 19 19 C 1.38107 * 120.24078 * 179.97438 * 18 17 16 20 20 C 1.38235 * 119.95331 * 0.27556 * 19 18 17 21 21 C 1.38228 * 119.91520 * 359.43356 * 20 19 18 22 22 Cl 1.73595 * 119.90669 * 180.30095 * 21 20 19 23 23 C 1.38194 * 109.76116 * 17.18727 * 17 16 14 24 24 C 1.51368 * 109.76378 * 0.02562 * 23 17 16 25 25 C 1.46955 * 110.87730 * 59.32289 * 13 12 11 26 26 C 1.46956 * 111.00492 * 59.30289 * 10 9 7 27 27 H 0.97000 * 120.00339 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47215 * 65.47798 * 9 7 2 29 29 H 1.09002 * 109.47127 * 305.47702 * 9 7 2 30 30 H 1.08996 * 109.48620 * 63.23022 * 11 10 9 31 31 H 1.09000 * 109.49114 * 303.16067 * 11 10 9 32 32 H 1.09001 * 109.48785 * 181.63912 * 12 11 10 33 33 H 1.08998 * 109.49224 * 61.56255 * 12 11 10 34 34 H 1.08995 * 110.30347 * 96.43419 * 16 14 13 35 35 H 1.09001 * 110.30339 * 334.27837 * 16 14 13 36 36 H 1.07998 * 119.87873 * 359.95039 * 18 17 16 37 37 H 1.07995 * 120.02451 * 180.02562 * 19 18 17 38 38 H 1.08003 * 120.04257 * 179.72654 * 20 19 18 39 39 H 1.09000 * 110.30176 * 101.73113 * 24 23 17 40 40 H 1.08998 * 110.30106 * 223.79140 * 24 23 17 41 41 H 1.08998 * 109.48876 * 60.64891 * 25 13 12 42 42 H 1.09000 * 109.48729 * 180.70975 * 25 13 12 43 43 H 1.09004 * 109.48546 * 296.77460 * 26 10 9 44 44 H 1.08998 * 109.49025 * 56.83896 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0011 -2.5727 -0.1339 11 6 3.6203 -3.3814 1.0325 12 6 4.2153 -4.7846 0.8932 13 7 3.7299 -5.3984 -0.3508 14 6 4.2196 -6.7770 -0.4836 15 1 5.3045 -6.7928 -0.5874 16 6 3.5441 -7.4915 -1.6733 17 6 3.3791 -8.9294 -1.2300 18 6 3.1347 -10.0743 -1.9702 19 6 3.0208 -11.2984 -1.3409 20 6 3.1452 -11.3822 0.0333 21 6 3.3951 -10.2420 0.7737 22 17 3.5590 -10.3486 2.4986 23 6 3.5093 -9.0128 0.1433 24 6 3.7701 -7.6366 0.7172 25 6 4.1108 -4.5896 -1.5172 26 6 3.5159 -3.1864 -1.3779 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.7677 0.9337 29 1 3.8746 -0.5974 -0.8380 30 1 2.5339 -3.4509 1.0876 31 1 4.0016 -2.9131 1.9399 32 1 3.9099 -5.3951 1.7430 33 1 5.3028 -4.7174 0.8652 34 1 4.1802 -7.4388 -2.5568 35 1 2.5712 -7.0453 -1.8796 36 1 3.0325 -10.0095 -3.0434 37 1 2.8306 -12.1889 -1.9215 38 1 3.0520 -12.3380 0.5274 39 1 2.8580 -7.2299 1.1539 40 1 4.5598 -7.6830 1.4670 41 1 5.1972 -4.5202 -1.5724 42 1 3.7294 -5.0578 -2.4246 43 1 2.4283 -3.2537 -1.3500 44 1 3.8211 -2.5759 -2.2278 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168735770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:14 Heat of formation + Delta-G solvation = 31.110507 kcal Electronic energy + Delta-G solvation = -24504.577055 eV Core-core repulsion = 21061.145068 eV Total energy + Delta-G solvation = -3443.431987 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55899 -38.71517 -36.79386 -36.16791 -33.87912 -32.19145 -31.47554 -30.43181 -29.22253 -27.50134 -27.28878 -24.73455 -22.98339 -22.34283 -21.48095 -21.13512 -20.34597 -19.11042 -16.98597 -16.82636 -16.18483 -16.00945 -15.50894 -14.70500 -14.49465 -14.26764 -14.17155 -13.99170 -13.74513 -13.66799 -13.35574 -12.98205 -12.68863 -12.53063 -12.11846 -12.09612 -11.85081 -11.76421 -11.45586 -11.31915 -11.24346 -11.10817 -10.96307 -10.88409 -10.64411 -10.46055 -10.20103 -10.06575 -9.88613 -9.47478 -8.86896 -8.80833 -8.58935 -8.12998 -7.20192 -6.09680 -4.09490 0.92567 1.01662 1.96236 3.27338 3.35350 3.35698 3.39118 3.92013 4.09658 4.39815 4.45926 4.67369 4.78674 4.91299 4.94619 5.11060 5.14083 5.19450 5.23625 5.35009 5.48022 5.59069 5.61281 5.64029 5.73264 5.79678 5.88251 5.89409 5.93845 5.95681 6.02427 6.10001 6.12246 6.25952 6.29406 6.54869 6.55923 6.77391 6.86222 6.92181 7.06157 7.29509 7.31833 7.56418 8.05086 8.09292 8.45576 8.94294 9.53113 11.03203 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.002701 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.662213 B =10364.835458 C =10742.609032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.155 3.845 10 N -0.537 5.537 11 C 0.062 3.938 12 C 0.059 3.941 13 N -0.527 5.527 14 C 0.086 3.914 15 H 0.052 0.948 16 C -0.075 4.075 17 C -0.076 4.076 18 C -0.104 4.104 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.022 4.022 22 Cl -0.074 7.074 23 C -0.082 4.082 24 C -0.075 4.075 25 C 0.059 3.941 26 C 0.063 3.937 27 H 0.263 0.737 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.087 -22.243 -1.925 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.028 3.972 10 N -0.261 5.261 11 C -0.067 4.067 12 C -0.069 4.069 13 N -0.252 5.252 14 C -0.023 4.023 15 H 0.070 0.930 16 C -0.113 4.113 17 C -0.077 4.077 18 C -0.123 4.123 19 C -0.128 4.128 20 C -0.134 4.134 21 C -0.049 4.049 22 Cl -0.045 7.045 23 C -0.083 4.083 24 C -0.112 4.112 25 C -0.069 4.069 26 C -0.066 4.066 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.959 -22.106 -1.759 23.917 hybrid contribution 0.228 0.856 0.162 0.901 sum 9.187 -21.250 -1.597 23.206 Atomic orbital electron populations 1.69930 1.06357 1.26947 1.50441 1.24976 0.94678 0.99166 0.94246 0.86807 0.80386 0.83671 0.78569 1.20241 1.21356 1.18934 1.21705 0.90625 0.94754 1.51798 0.90484 1.20141 0.94700 0.85681 0.96660 1.62619 1.58363 1.03754 1.01410 1.21959 0.99770 0.90854 0.94101 1.22233 0.97379 0.95860 0.91441 1.62232 1.59334 1.00324 1.03267 1.22218 0.96709 0.89089 0.94299 0.92971 1.21138 1.02660 0.89508 0.97964 1.20587 0.98327 0.95557 0.93195 1.20743 0.99920 0.91376 1.00216 1.20972 1.00378 0.97792 0.93708 1.20934 1.01268 0.97168 0.94075 1.20525 1.05666 0.94049 0.84611 1.98368 1.96169 1.98560 1.11445 1.20399 0.99519 0.93816 0.94574 1.21141 1.02940 0.89383 0.97720 1.22231 0.97998 0.94208 0.92429 1.21951 0.99461 0.91917 0.93278 0.92713 0.95551 0.95730 0.92796 0.91385 0.90936 0.94739 0.90543 0.88286 0.85546 0.85018 0.84955 0.88302 0.90507 0.94792 0.91024 0.92508 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.32 27.36 -169.99 -4.65 16.67 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.20 6.70 56.52 0.38 -5.82 16 7 C -0.55 -15.17 8.21 -34.44 -0.28 -15.45 16 8 H 0.08 2.33 6.07 -52.49 -0.32 2.01 16 9 C 0.15 3.69 4.21 -4.98 -0.02 3.67 16 10 N -0.54 -11.05 4.92 -235.92 -1.16 -12.21 16 11 C 0.06 1.17 5.31 -3.77 -0.02 1.15 16 12 C 0.06 0.89 5.39 -3.76 -0.02 0.87 16 13 N -0.53 -7.69 4.53 -224.79 -1.02 -8.71 16 14 C 0.09 1.03 2.75 -66.29 -0.18 0.84 16 15 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 16 C -0.08 -0.81 5.28 -26.85 -0.14 -0.95 16 17 C -0.08 -0.81 6.14 -104.21 -0.64 -1.45 16 18 C -0.10 -0.94 10.04 -39.53 -0.40 -1.34 16 19 C -0.11 -0.90 10.04 -39.63 -0.40 -1.30 16 20 C -0.12 -1.05 9.83 -39.59 -0.39 -1.44 16 21 C -0.02 -0.24 6.32 -39.45 -0.25 -0.49 16 22 Cl -0.07 -0.78 28.71 -51.86 -1.49 -2.27 16 23 C -0.08 -0.93 6.05 -104.17 -0.63 -1.56 16 24 C -0.07 -0.87 4.80 -26.84 -0.13 -1.00 16 25 C 0.06 0.89 5.46 -3.77 -0.02 0.87 16 26 C 0.06 1.19 5.24 -3.77 -0.02 1.17 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.03 0.64 7.56 -51.93 -0.39 0.25 16 29 H 0.02 0.59 7.27 -51.93 -0.38 0.21 16 30 H 0.05 1.18 6.75 -51.93 -0.35 0.83 16 31 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.07 0.99 6.82 -51.93 -0.35 0.64 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.10 1.27 7.78 -51.93 -0.40 0.86 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.94 7.22 -51.93 -0.38 0.57 16 43 H 0.06 1.25 6.64 -51.93 -0.35 0.91 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -29.95 354.59 -12.56 -42.51 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.72 Total: -0.36 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -3.64 Total: -14.45 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -1.40 Total: -47.44 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.65 Total: 16.67 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.49 Total: -2.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.95 -12.56 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168735770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.620 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds