Wall clock time and date at job start Tue Mar 31 2020 13:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86804 * 119.99976 * 2 1 4 4 H 1.48502 * 109.46973 * 270.00194 * 3 2 1 5 5 H 1.48495 * 109.46943 * 29.99972 * 3 2 1 6 6 H 1.48495 * 109.46951 * 150.00117 * 3 2 1 7 7 C 1.39909 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00218 * 195.42284 * 7 2 1 9 9 C 1.41013 * 120.00249 * 15.42186 * 7 2 1 10 10 C 1.40746 * 120.29080 * 25.57062 * 9 7 2 11 11 C 1.36413 * 119.96468 * 179.72647 * 10 9 7 12 12 C 1.39054 * 120.57657 * 0.02562 * 11 10 9 13 13 Cl 1.73603 * 119.70016 * 180.02562 * 12 11 10 14 14 C 1.38315 * 120.59406 * 359.97438 * 12 11 10 15 15 C 1.38678 * 120.01862 * 0.02562 * 14 12 11 16 16 N 1.38742 * 120.28884 * 180.02562 * 15 14 12 17 17 C 1.46505 * 119.99525 * 359.97438 * 16 15 14 18 18 C 1.53006 * 109.46597 * 180.02562 * 17 16 15 19 19 C 1.53392 * 110.11245 * 299.71668 * 18 17 16 20 20 C 1.54776 * 107.98667 * 179.57446 * 19 18 17 21 21 N 1.46938 * 109.55894 * 0.73571 * 20 19 18 22 22 C 1.46905 * 111.05844 * 61.54573 * 21 20 19 23 23 C 1.53146 * 109.37100 * 298.00470 * 22 21 20 24 24 C 1.46952 * 110.96857 * 297.50173 * 21 20 19 25 25 C 1.53132 * 109.34775 * 62.08479 * 24 21 20 26 26 H 0.96995 * 119.99841 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.01828 * 359.74970 * 10 9 7 28 28 H 1.08000 * 119.70828 * 180.02562 * 11 10 9 29 29 H 1.08004 * 119.99128 * 180.02562 * 14 12 11 30 30 H 0.96995 * 120.00396 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.47154 * 299.99271 * 17 16 15 32 32 H 1.08989 * 109.47516 * 59.99889 * 17 16 15 33 33 H 1.08992 * 109.57906 * 300.17021 * 19 18 17 34 34 H 1.09001 * 109.57665 * 60.55793 * 19 18 17 35 35 H 1.09004 * 109.72587 * 240.49821 * 20 19 18 36 36 H 1.09006 * 109.07558 * 120.56864 * 20 19 18 37 37 H 1.09003 * 109.49502 * 178.03831 * 22 21 20 38 38 H 1.09003 * 109.50544 * 57.98170 * 22 21 20 39 39 H 1.09000 * 109.57953 * 240.19945 * 23 22 21 40 40 H 1.08997 * 109.68661 * 119.86484 * 23 22 21 41 41 H 1.09001 * 109.49143 * 182.04741 * 24 21 20 42 42 H 1.08994 * 109.48871 * 302.09632 * 24 21 20 43 43 H 1.09001 * 109.56967 * 240.12703 * 25 24 21 44 44 H 1.08997 * 109.57281 * 119.75154 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4904 2.0465 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4402 0.7000 7 6 2.0085 -1.2116 0.0005 8 1 3.0594 -1.2284 0.2493 9 6 1.3416 -2.4110 -0.3237 10 6 0.1943 -2.3874 -1.1386 11 6 -0.4424 -3.5523 -1.4526 12 6 0.0313 -4.7687 -0.9738 13 17 -0.7963 -6.2374 -1.3882 14 6 1.1567 -4.8192 -0.1712 15 6 1.8232 -3.6500 0.1634 16 7 2.9529 -3.6942 0.9676 17 6 3.4461 -4.9799 1.4677 18 6 4.6933 -4.7495 2.3236 19 6 5.7935 -4.0868 1.4849 20 6 7.0238 -3.8674 2.3981 21 7 6.7342 -4.3788 3.7448 22 6 6.4624 -5.8222 3.7142 23 6 5.2225 -6.0874 2.8553 24 6 5.6186 -3.6444 4.3577 25 6 4.3547 -3.8481 3.5175 26 1 -0.4850 0.8400 0.0004 27 1 -0.1815 -1.4477 -1.5154 28 1 -1.3222 -3.5294 -2.0786 29 1 1.5165 -5.7694 0.1950 30 1 3.4161 -2.8739 1.1988 31 1 2.6737 -5.4551 2.0724 32 1 3.6968 -5.6252 0.6259 33 1 6.0493 -4.7308 0.6436 34 1 5.4413 -3.1235 1.1160 35 1 7.2547 -2.8036 2.4549 36 1 7.8768 -4.4029 1.9814 37 1 6.2856 -6.1806 4.7283 38 1 7.3187 -6.3448 3.2878 39 1 4.4549 -6.5691 3.4610 40 1 5.4869 -6.7341 2.0187 41 1 5.4483 -4.0179 5.3674 42 1 5.8612 -2.5826 4.3988 43 1 3.9965 -2.8838 3.1571 44 1 3.5843 -4.3218 4.1258 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169800133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:23 Heat of formation + Delta-G solvation = -1.918153 kcal Electronic energy + Delta-G solvation = -25234.681166 eV Core-core repulsion = 21789.816949 eV Total energy + Delta-G solvation = -3444.864217 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.83037 -39.82293 -37.22277 -36.50251 -35.28735 -33.43718 -31.91502 -31.80971 -31.39249 -29.71511 -27.15458 -26.38597 -23.98655 -23.92880 -23.35073 -22.38437 -21.70599 -19.20884 -18.36980 -17.87788 -17.26143 -17.25376 -16.84157 -16.72259 -15.91083 -15.68043 -15.09421 -14.80387 -14.52885 -14.34738 -13.95500 -13.92051 -13.87585 -13.84447 -13.43128 -13.13979 -13.10601 -13.08183 -12.87064 -12.80324 -12.72317 -12.34709 -12.11997 -12.06459 -11.77722 -11.51511 -11.41630 -11.39466 -11.07050 -11.03213 -10.96493 -10.49575 -9.24029 -9.19915 -8.63077 -8.13968 -6.11273 0.84703 1.21428 1.39745 1.48784 1.50802 1.69293 2.21350 2.73811 2.91796 3.09935 3.57943 3.64341 3.71833 3.74966 4.12114 4.22311 4.28615 4.31654 4.32506 4.38310 4.41689 4.59360 4.70465 4.74771 4.75562 4.80288 4.96837 4.98857 4.99462 5.00088 5.05216 5.13334 5.18235 5.21986 5.31107 5.35041 5.35306 5.49552 5.55700 5.85246 6.04871 6.14295 6.18259 6.18918 6.45770 6.79716 6.92650 7.11459 7.23812 8.39206 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.005124 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.451384 B = 5463.115122 C = 8065.687574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.036 3.964 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.478 4.478 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.157 4.157 11 C -0.140 4.140 12 C -0.105 4.105 13 Cl -0.109 7.109 14 C -0.175 4.175 15 C 0.126 3.874 16 N -0.737 5.737 17 C 0.151 3.849 18 C -0.060 4.060 19 C -0.139 4.139 20 C 0.057 3.943 21 N -0.534 5.534 22 C 0.057 3.943 23 C -0.136 4.136 24 C 0.057 3.943 25 C -0.140 4.140 26 H 0.285 0.715 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.395 0.605 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.751 -6.929 6.572 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.508 4.508 8 H 0.094 0.906 9 C 0.036 3.964 10 C -0.178 4.178 11 C -0.160 4.160 12 C -0.132 4.132 13 Cl -0.080 7.080 14 C -0.199 4.199 15 C 0.024 3.976 16 N -0.370 5.370 17 C 0.027 3.973 18 C -0.062 4.062 19 C -0.178 4.178 20 C -0.072 4.072 21 N -0.254 5.254 22 C -0.072 4.072 23 C -0.176 4.176 24 C -0.071 4.071 25 C -0.179 4.179 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.232 0.768 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.973 -7.013 6.929 15.510 hybrid contribution -1.111 0.905 -0.780 1.631 sum 10.862 -6.108 6.150 13.896 Atomic orbital electron populations 1.69893 1.08798 1.30125 1.36712 1.26586 0.95382 1.04030 0.91830 0.85307 0.79178 0.76671 0.79235 1.19175 1.19872 1.17999 1.19366 0.96902 0.91573 1.42967 0.90581 1.17627 0.94129 0.91653 0.92989 1.20726 0.99363 0.96421 1.01320 1.20295 1.00952 0.91403 1.03354 1.20095 0.98848 0.85368 1.08936 1.98218 1.79121 1.37403 1.93301 1.19979 0.98143 0.96460 1.05341 1.17860 0.91090 0.92872 0.95746 1.44036 1.29149 1.07934 1.55927 1.21099 0.94419 0.85863 0.95961 1.20645 0.93860 0.96862 0.94792 1.22520 0.96287 1.00499 0.98521 1.22497 0.96452 1.01017 0.87223 1.62555 1.38777 1.04138 1.19942 1.22244 0.96467 0.88048 1.00408 1.22213 0.99375 0.95271 1.00730 1.22199 0.87907 0.99174 0.97846 1.22221 0.99400 0.99426 0.96872 0.90453 0.87200 0.87731 0.86721 0.76809 0.94059 0.93576 0.91349 0.93120 0.90703 0.89520 0.89717 0.89519 0.91190 0.90903 0.89633 0.90772 0.93169 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.38 10.88 21.82 0.24 -42.14 16 2 C 0.04 1.73 5.18 85.24 0.44 2.18 16 3 Si 0.97 37.08 29.59 68.60 2.03 39.11 16 4 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 6 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 7 C -0.48 -23.97 8.51 23.36 0.20 -23.77 16 8 H 0.08 3.61 6.68 -2.91 -0.02 3.59 16 9 C 0.04 2.09 5.58 -21.16 -0.12 1.98 16 10 C -0.16 -8.16 8.63 22.46 0.19 -7.97 16 11 C -0.14 -6.66 9.74 22.04 0.21 -6.44 16 12 C -0.10 -4.68 6.33 22.48 0.14 -4.54 16 13 Cl -0.11 -4.12 28.94 -2.72 -0.08 -4.20 16 14 C -0.17 -7.68 9.07 22.39 0.20 -7.48 16 15 C 0.13 5.79 6.68 38.98 0.26 6.05 16 16 N -0.74 -28.05 5.09 -338.07 -1.72 -29.77 16 17 C 0.15 4.60 3.89 86.38 0.34 4.93 16 18 C -0.06 -1.44 0.56 -51.79 -0.03 -1.47 16 19 C -0.14 -3.26 5.03 31.33 0.16 -3.10 16 20 C 0.06 1.12 6.13 86.90 0.53 1.65 16 21 N -0.53 -10.37 5.22 -891.70 -4.65 -15.02 16 22 C 0.06 0.94 6.10 86.35 0.53 1.46 16 23 C -0.14 -2.57 5.07 30.77 0.16 -2.42 16 24 C 0.06 1.16 6.09 86.34 0.53 1.69 16 25 C -0.14 -3.42 4.91 30.77 0.15 -3.27 16 26 H 0.28 13.35 8.30 -92.71 -0.77 12.58 16 27 H 0.11 5.99 6.13 -2.91 -0.02 5.97 16 28 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 29 H 0.11 4.57 6.73 -2.91 -0.02 4.55 16 30 H 0.40 15.21 4.51 -92.71 -0.42 14.79 16 31 H 0.04 1.31 7.94 -2.39 -0.02 1.29 16 32 H 0.05 1.42 7.94 -2.39 -0.02 1.40 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.39 6.96 -2.39 -0.02 1.38 16 35 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 1.45 6.96 -2.39 -0.02 1.43 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -54.55 350.18 0.30 -54.25 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: 0.59 Total: 38.29 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 3.89 Total: -40.52 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -6.14 Total: -86.93 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 17 Polarization: -4.12 SS G_CDS: -0.08 Total: -4.20 kcal Total: -54.55 0.30 -54.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169800133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.335 kcal (2) G-P(sol) polarization free energy of solvation -54.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds