Wall clock time and date at job start Tue Mar 31 2020 13:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48500 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47112 * 300.00598 * 3 2 1 6 6 H 1.48504 * 109.46610 * 60.00255 * 3 2 1 7 7 C 1.39899 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99672 * 165.42499 * 7 2 1 9 9 C 1.40990 * 120.00253 * 345.42994 * 7 2 1 10 10 C 1.40753 * 120.30846 * 330.46403 * 9 7 2 11 11 C 1.36413 * 119.94931 * 180.02562 * 10 9 7 12 12 C 1.38948 * 120.61915 * 0.02562 * 11 10 9 13 13 C 1.38073 * 120.64046 * 359.74170 * 12 11 10 14 14 C 1.38867 * 120.02171 * 0.51432 * 13 12 11 15 15 N 1.38533 * 120.30671 * 179.76796 * 14 13 12 16 16 C 1.40498 * 120.00083 * 352.87452 * 15 14 13 17 17 C 1.40311 * 126.09102 * 323.73594 * 16 15 14 18 18 N 1.30819 * 108.33763 * 179.97438 * 17 16 15 19 19 N 1.40068 * 108.39813 * 359.97438 * 18 17 16 20 20 C 1.46501 * 126.04621 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.47095 * 305.02842 * 20 19 18 22 22 C 1.38673 * 120.42099 * 90.00175 * 21 20 19 23 23 C 1.38622 * 118.42159 * 180.02562 * 22 21 20 24 24 C 1.38228 * 119.16330 * 359.97438 * 23 22 21 25 25 N 1.31854 * 120.76065 * 0.02562 * 24 23 22 26 26 C 1.31887 * 121.72668 * 359.69549 * 25 24 23 27 27 C 1.35839 * 107.90508 * 0.02562 * 19 18 17 28 28 H 0.96997 * 119.99721 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.02523 * 0.05289 * 10 9 7 30 30 H 1.08005 * 119.68479 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.67694 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.99309 * 180.25141 * 13 12 11 33 33 H 0.97000 * 119.99833 * 172.87889 * 15 14 13 34 34 H 1.07996 * 125.83278 * 359.97438 * 17 16 15 35 35 H 1.08996 * 109.47062 * 65.02546 * 20 19 18 36 36 H 1.08998 * 109.46918 * 185.02850 * 20 19 18 37 37 H 1.07998 * 120.78540 * 359.97438 * 22 21 20 38 38 H 1.08003 * 120.41959 * 180.02562 * 23 22 21 39 39 H 1.08005 * 119.61953 * 179.97438 * 24 23 22 40 40 H 1.08002 * 119.61565 * 180.31118 * 26 25 24 41 41 H 1.08001 * 126.22980 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3462 -0.0006 5 1 1.8843 2.3964 -1.2124 6 1 1.8844 2.3963 1.2126 7 6 2.0084 -1.2116 -0.0005 8 1 3.0623 -1.2266 -0.2359 9 6 1.3374 -2.4131 0.3061 10 6 0.2290 -2.4063 1.1736 11 6 -0.4144 -3.5731 1.4656 12 6 0.0139 -4.7746 0.9145 13 6 1.0953 -4.8095 0.0568 14 6 1.7732 -3.6382 -0.2545 15 7 2.8620 -3.6671 -1.1106 16 6 3.3780 -4.8979 -1.5496 17 6 3.4599 -6.0768 -0.7932 18 7 3.9950 -7.0084 -1.5397 19 7 4.2736 -6.4607 -2.7983 20 6 4.8777 -7.1665 -3.9311 21 6 6.1870 -7.7770 -3.5021 22 6 6.2258 -9.0624 -2.9832 23 6 7.4525 -9.5829 -2.6012 24 6 8.5883 -8.8092 -2.7496 25 7 8.5137 -7.5903 -3.2470 26 6 7.3648 -7.0649 -3.6258 27 6 3.8856 -5.1590 -2.7825 28 1 -0.4849 0.8400 0.0004 29 1 -0.1120 -1.4779 1.6073 30 1 -1.2642 -3.5630 2.1322 31 1 -0.5066 -5.6895 1.1565 32 1 1.4168 -5.7486 -0.3688 33 1 3.2681 -2.8375 -1.4069 34 1 3.1366 -6.1950 0.2304 35 1 4.2039 -7.9532 -4.2702 36 1 5.0541 -6.4633 -4.7450 37 1 5.3217 -9.6437 -2.8785 38 1 7.5201 -10.5808 -2.1936 39 1 9.5478 -9.2073 -2.4540 40 1 7.3438 -6.0650 -4.0334 41 1 3.9655 -4.4591 -3.6011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176456687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:12 Heat of formation + Delta-G solvation = 146.913373 kcal Electronic energy + Delta-G solvation = -24881.357141 eV Core-core repulsion = 21341.839250 eV Total energy + Delta-G solvation = -3539.517891 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98619 -40.21724 -37.90868 -35.06467 -33.85649 -33.52096 -32.33583 -30.89948 -29.80875 -29.16804 -27.33262 -26.11555 -25.01776 -23.83966 -22.77904 -21.44079 -20.92858 -20.16996 -19.61505 -17.41142 -17.17037 -16.90089 -16.62798 -16.16205 -15.74680 -15.06037 -14.87772 -14.64438 -14.29669 -13.92888 -13.79430 -13.50694 -13.29066 -12.84714 -12.75547 -12.73567 -12.37823 -12.15013 -11.86086 -11.83156 -11.36982 -11.09780 -10.94601 -10.60268 -10.46293 -10.08745 -9.82659 -9.75230 -9.57930 -9.48062 -9.37478 -9.15935 -9.02119 -7.85120 -7.35185 -6.71279 -6.16017 -4.19006 0.73400 1.03007 2.11037 2.70364 2.80883 2.95267 3.10472 3.14567 3.22451 3.48804 3.60774 3.97828 4.10533 4.26523 4.46225 4.53533 4.67947 4.69965 4.73094 4.94738 5.12387 5.18192 5.29718 5.42442 5.49080 5.70551 5.83790 5.87868 6.01231 6.16166 6.27155 6.39699 6.46794 6.56647 6.79741 7.01667 7.17412 7.23021 7.27961 7.49845 7.68809 7.70174 7.84161 7.97174 8.16296 8.21351 8.42823 8.71973 8.80021 8.97365 9.08265 10.30159 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.002857 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.458820 B = 9797.057567 C =10914.166430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.077 3.923 3 Si 0.903 3.097 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.470 4.470 8 H 0.072 0.928 9 C 0.076 3.924 10 C -0.133 4.133 11 C -0.141 4.141 12 C -0.197 4.197 13 C -0.166 4.166 14 C 0.095 3.905 15 N -0.656 5.656 16 C 0.060 3.940 17 C 0.032 3.968 18 N -0.285 5.285 19 N -0.380 5.380 20 C 0.192 3.808 21 C -0.157 4.157 22 C -0.040 4.040 23 C -0.177 4.177 24 C 0.102 3.898 25 N -0.488 5.488 26 C 0.118 3.882 27 C -0.020 4.020 28 H 0.277 0.723 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.405 0.595 34 H 0.185 0.815 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.668 -12.976 -7.957 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.501 4.501 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.153 4.153 11 C -0.160 4.160 12 C -0.217 4.217 13 C -0.188 4.188 14 C -0.002 4.002 15 N -0.281 5.281 16 C -0.048 4.048 17 C -0.157 4.157 18 N -0.107 5.107 19 N -0.167 5.167 20 C 0.069 3.931 21 C -0.160 4.160 22 C -0.067 4.067 23 C -0.196 4.196 24 C -0.055 4.055 25 N -0.196 5.196 26 C -0.039 4.039 27 C -0.165 4.165 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.242 0.758 34 H 0.201 0.799 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.172 0.828 40 H 0.171 0.829 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.624 -13.660 -8.207 19.724 hybrid contribution -0.683 1.525 0.045 1.671 sum 10.941 -12.135 -8.162 18.265 Atomic orbital electron populations 1.69845 1.07303 1.28683 1.37205 1.25753 0.94688 1.00787 0.92677 0.86344 0.80829 0.81565 0.78408 1.18647 1.20248 1.19918 1.19153 0.96418 0.90895 1.43648 0.90954 1.17220 0.93748 0.90327 0.91529 1.20772 0.98465 0.96640 0.99441 1.20343 1.00111 0.93498 1.02075 1.20187 1.00384 0.96351 1.04790 1.20392 0.99080 0.95811 1.03504 1.17852 0.91236 0.94821 0.96322 1.40895 1.32508 1.03306 1.51391 1.17678 1.05544 0.89585 0.91946 1.23993 1.00086 0.91398 1.00248 1.77142 1.20289 1.22669 0.90552 1.48040 1.50466 1.07527 1.10682 1.20269 0.90390 0.97062 0.85340 1.20941 0.96204 0.95885 1.02952 1.21513 0.98308 0.94337 0.92541 1.22162 0.93518 1.01871 1.02079 1.22822 0.98708 0.89781 0.94186 1.67721 1.28499 1.12768 1.10651 1.22681 0.87230 0.99182 0.94841 1.21990 1.09339 0.87047 0.98158 0.91221 0.86723 0.89683 0.89520 0.88284 0.75824 0.79862 0.89198 0.87729 0.84560 0.84630 0.82756 0.82885 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.67 11.11 55.55 0.62 -20.05 16 2 C 0.08 1.90 5.17 -17.33 -0.09 1.81 16 3 Si 0.90 18.51 29.58 -169.99 -5.03 13.48 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.47 -11.92 8.36 -37.92 -0.32 -12.23 16 8 H 0.07 1.75 6.94 -52.49 -0.36 1.38 16 9 C 0.08 1.96 5.54 -106.62 -0.59 1.37 16 10 C -0.13 -3.41 8.60 -39.29 -0.34 -3.75 16 11 C -0.14 -3.31 9.96 -39.98 -0.40 -3.71 16 12 C -0.20 -4.42 10.03 -39.38 -0.40 -4.81 16 13 C -0.17 -3.70 8.40 -39.41 -0.33 -4.03 16 14 C 0.10 2.23 6.61 -83.32 -0.55 1.68 16 15 N -0.66 -13.35 5.51 -8.23 -0.05 -13.39 16 16 C 0.06 1.08 6.32 -83.96 -0.53 0.55 16 17 C 0.03 0.55 9.50 -17.20 -0.16 0.39 16 18 N -0.28 -4.60 12.39 30.71 0.38 -4.22 16 19 N -0.38 -5.15 3.69 -62.17 -0.23 -5.38 16 20 C 0.19 1.78 6.67 -5.19 -0.03 1.74 16 21 C -0.16 -1.56 5.33 -104.48 -0.56 -2.12 16 22 C -0.04 -0.38 9.86 -39.28 -0.39 -0.77 16 23 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 24 C 0.10 0.96 11.18 -17.55 -0.20 0.77 16 25 N -0.49 -5.66 10.36 -13.25 -0.14 -5.80 16 26 C 0.12 1.25 10.86 -17.55 -0.19 1.06 16 27 C -0.02 -0.29 11.52 -16.63 -0.19 -0.48 16 28 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 29 H 0.11 3.05 6.42 -52.49 -0.34 2.71 16 30 H 0.08 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.10 2.05 5.02 -52.49 -0.26 1.78 16 33 H 0.41 8.03 7.20 -40.82 -0.29 7.74 16 34 H 0.18 3.19 6.91 -52.49 -0.36 2.83 16 35 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.10 0.68 8.02 -51.93 -0.42 0.26 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.16 1.03 8.06 -52.48 -0.42 0.60 16 40 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.17 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -30.41 351.31 -9.36 -39.78 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -4.55 Total: 14.74 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -5.66 Total: -24.45 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.59 Total: -48.84 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.41 -9.36 -39.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176456687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.689 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds