Wall clock time and date at job start Tue Mar 31 2020 13:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35953 * 116.99983 * 2 1 4 4 C 1.38658 * 120.06276 * 0.02562 * 3 2 1 5 5 C 1.38181 * 119.97085 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.95449 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00050 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 9 7 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99813 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00047 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47231 * 89.99796 * 15 13 11 17 17 H 1.48499 * 109.47342 * 210.00322 * 15 13 11 18 18 H 1.48505 * 109.46935 * 330.00024 * 15 13 11 19 19 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 20 20 C 1.52998 * 109.47320 * 89.99349 * 19 9 7 21 21 C 1.47196 * 109.47171 * 180.02562 * 20 19 9 22 22 N 9.30155 * 63.51137 * 347.41641 * 2 1 3 23 23 C 1.38261 * 120.09603 * 0.25365 * 5 4 3 24 24 C 1.38257 * 120.12452 * 359.49151 * 23 5 4 25 25 C 1.38336 * 120.02872 * 0.50580 * 24 23 5 26 26 F 1.35104 * 120.04848 * 179.72502 * 25 24 23 27 27 H 1.08997 * 109.47159 * 299.99165 * 1 2 3 28 28 H 1.09003 * 109.47744 * 59.99764 * 1 2 3 29 29 H 1.09001 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.01678 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.47210 * 330.00343 * 6 5 4 32 32 H 1.08994 * 109.47551 * 209.99996 * 6 5 4 33 33 H 1.09001 * 109.47567 * 210.00057 * 10 9 7 34 34 H 1.09005 * 109.47076 * 330.00563 * 10 9 7 35 35 H 0.97004 * 119.99796 * 179.97438 * 14 13 11 36 36 H 1.08994 * 109.46996 * 209.99677 * 19 9 7 37 37 H 1.09001 * 109.46578 * 329.99540 * 19 9 7 38 38 H 1.08997 * 109.47106 * 300.00561 * 20 19 9 39 39 H 1.09004 * 109.46895 * 60.00075 * 20 19 9 40 40 H 1.08002 * 119.93835 * 179.73981 * 23 5 4 41 41 H 1.07997 * 119.99053 * 180.23109 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6053 0.0011 6 6 1.1018 4.8698 0.0011 7 6 0.8280 5.2909 1.4219 8 8 1.2568 4.6296 2.3438 9 7 0.1119 6.4058 1.6682 10 6 -0.1491 6.8185 3.0494 11 6 0.9564 7.7285 3.5192 12 1 1.7717 7.9752 2.8552 13 6 0.9271 8.2463 4.7968 14 7 1.8917 9.0409 5.2065 15 14 -0.4826 7.8192 5.9455 16 1 -0.1403 6.5967 6.7160 17 1 -0.7156 8.9465 6.8837 18 1 -1.7126 7.5749 5.1502 19 6 -0.4057 7.2049 0.5548 20 6 -1.7991 6.7028 0.1710 21 6 -2.3188 7.5054 -0.9481 22 7 -2.7197 8.1251 -1.8137 23 6 3.3022 3.6777 -0.0042 24 6 4.0579 2.5199 0.0005 25 6 3.4333 1.2856 0.0001 26 9 4.1713 0.1540 -0.0009 27 1 -0.3633 0.5137 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2136 2.3200 0.0005 31 1 0.1575 4.6907 -0.5131 32 1 1.6510 5.6589 -0.5123 33 1 -1.1006 7.3483 3.0968 34 1 -0.1914 5.9376 3.6901 35 1 1.8709 9.4055 6.1052 36 1 -0.4665 8.2508 0.8556 37 1 0.2627 7.1113 -0.3011 38 1 -1.7383 5.6569 -0.1297 39 1 -2.4675 6.7965 1.0270 40 1 3.7914 4.6406 -0.0080 41 1 5.1362 2.5791 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180425122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:06 Heat of formation + Delta-G solvation = -61.797109 kcal Electronic energy + Delta-G solvation = -26274.008775 eV Core-core repulsion = 22262.378542 eV Total energy + Delta-G solvation = -4011.630233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.75671 -40.31783 -39.36996 -37.60819 -36.90890 -35.37700 -33.04415 -32.35132 -31.08019 -30.38400 -28.85592 -27.71560 -26.52358 -24.13666 -22.85976 -22.63719 -21.49180 -18.78540 -18.06521 -17.79395 -17.18200 -16.94601 -16.86214 -16.65241 -16.19074 -15.73488 -15.09697 -14.93079 -14.77730 -14.61359 -14.37320 -14.20941 -13.97253 -13.76832 -13.30372 -12.95197 -12.70326 -12.55949 -12.48997 -12.26761 -12.22793 -12.14467 -11.73729 -11.63277 -11.54661 -11.24655 -11.16549 -11.11416 -10.91154 -10.60601 -10.26320 -9.64515 -9.28976 -8.85597 -8.66301 -8.18897 -7.98437 -6.15890 -4.15747 1.05760 1.23811 2.60257 2.69002 3.00778 3.12604 3.22749 3.27720 3.30617 3.37369 3.61412 4.10039 4.19947 4.32334 4.48647 4.66951 4.81684 4.85615 4.93632 4.96669 5.01535 5.05050 5.13956 5.18235 5.24547 5.28207 5.38252 5.42547 5.51442 5.67033 5.89218 5.89934 5.97286 6.15205 6.43417 6.52371 6.57624 6.81070 7.11938 7.17000 7.46046 7.51186 7.99753 8.37019 8.75336 8.87786 9.43533 10.97321 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.003858 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.526754 B = 7255.457689 C = 8710.827326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.094 3.906 4 C -0.167 4.167 5 C -0.027 4.027 6 C -0.109 4.109 7 C 0.511 3.489 8 O -0.521 6.521 9 N -0.593 5.593 10 C 0.215 3.785 11 C -0.532 4.532 12 H 0.076 0.924 13 C 0.074 3.926 14 N -0.895 5.895 15 Si 0.875 3.125 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.265 1.265 19 C 0.116 3.884 20 C -0.050 4.050 21 C 0.214 3.786 22 N -0.441 5.441 23 C -0.110 4.110 24 C -0.113 4.113 25 C 0.062 3.938 26 F -0.137 7.137 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.135 0.865 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.135 0.865 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 -12.811 -13.167 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.048 3.952 4 C -0.186 4.186 5 C -0.028 4.028 6 C -0.149 4.149 7 C 0.297 3.703 8 O -0.396 6.396 9 N -0.324 5.324 10 C 0.095 3.905 11 C -0.571 4.571 12 H 0.094 0.906 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.010 4.010 20 C -0.092 4.092 21 C -0.104 4.104 22 N -0.119 5.119 23 C -0.129 4.129 24 C -0.132 4.132 25 C 0.043 3.957 26 F -0.116 7.116 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.153 0.847 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.153 0.847 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.485 -12.368 -13.768 19.043 hybrid contribution -0.640 -0.299 1.145 1.346 sum -5.125 -12.667 -12.623 18.603 Atomic orbital electron populations 1.23104 0.78046 1.04068 1.01669 1.86109 1.21659 1.25890 1.88931 1.18885 0.90746 0.85433 1.00100 1.20909 1.00057 0.90878 1.06748 1.19174 0.93619 0.93314 0.96694 1.20845 1.01167 0.96124 0.96726 1.20175 0.78909 0.81019 0.90188 1.90736 1.49449 1.53394 1.46052 1.47890 1.52507 1.24111 1.07931 1.19726 0.96992 0.96173 0.77626 1.21292 1.08272 1.27952 0.99547 0.90637 1.24854 0.95852 0.94531 0.97661 1.69890 1.32396 1.32367 1.18643 0.86882 0.82980 0.78510 0.81469 1.19917 1.21094 1.19009 1.21357 0.91378 0.97690 0.90624 1.19892 0.99219 0.97936 0.92143 1.29115 0.93394 0.93769 0.94093 1.81298 1.09247 1.09735 1.11573 1.20828 0.92897 0.98324 1.00804 1.20954 1.00996 0.90072 1.01136 1.16954 0.85922 0.82951 1.09913 1.91476 1.76438 1.49215 1.94431 0.92192 0.92521 0.88140 0.84679 0.88293 0.87597 0.94998 0.94300 0.92481 0.88433 0.90144 0.87553 0.86663 0.84665 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.92 10.36 -19.59 -0.20 -4.13 16 3 C 0.09 1.25 6.69 -39.18 -0.26 0.99 16 4 C -0.17 -2.01 8.69 -39.45 -0.34 -2.35 16 5 C -0.03 -0.34 4.37 -104.63 -0.46 -0.80 16 6 C -0.11 -1.20 4.38 -29.03 -0.13 -1.33 16 7 C 0.51 8.39 7.67 -10.98 -0.08 8.31 16 8 O -0.52 -11.21 15.61 5.55 0.09 -11.12 16 9 N -0.59 -9.65 2.46 -175.06 -0.43 -10.08 16 10 C 0.21 4.53 4.23 -5.20 -0.02 4.51 16 11 C -0.53 -13.98 9.94 -34.44 -0.34 -14.32 16 12 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 15 Si 0.87 20.24 27.47 -169.99 -4.67 15.57 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -5.62 6.54 56.52 0.37 -5.25 16 19 C 0.12 1.32 5.17 -4.04 -0.02 1.30 16 20 C -0.05 -0.42 6.03 -29.52 -0.18 -0.60 16 21 C 0.21 2.24 15.44 -20.71 -0.32 1.92 16 22 N -0.44 -5.91 18.55 42.22 0.78 -5.12 16 23 C -0.11 -1.37 9.69 -39.57 -0.38 -1.76 16 24 C -0.11 -1.39 10.02 -39.54 -0.40 -1.79 16 25 C 0.06 0.86 7.31 -39.30 -0.29 0.57 16 26 F -0.14 -1.99 17.11 2.25 0.04 -1.95 16 27 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.14 1.29 6.30 -52.48 -0.33 0.96 16 31 H 0.10 0.75 7.16 -51.93 -0.37 0.37 16 32 H 0.11 0.97 7.34 -51.93 -0.38 0.59 16 33 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 34 H 0.04 0.89 6.85 -51.93 -0.36 0.54 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.10 1.23 8.07 -51.93 -0.42 0.82 16 37 H 0.08 0.73 6.43 -51.93 -0.33 0.40 16 38 H 0.11 0.63 7.24 -51.93 -0.38 0.26 16 39 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -35.43 361.80 -5.51 -40.94 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.02 Total: -1.72 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.33 Total: -2.21 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 1.13 Total: -40.83 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.12 Total: -15.25 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.43 -5.51 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180425122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.858 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds