Wall clock time and date at job start Tue Mar 31 2020 13:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35953 * 116.99983 * 2 1 4 4 C 1.38658 * 120.06276 * 0.02562 * 3 2 1 5 5 C 1.38181 * 119.97085 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.95449 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00050 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 9 7 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99813 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00047 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47231 * 89.99796 * 15 13 11 17 17 H 1.48499 * 109.47342 * 210.00322 * 15 13 11 18 18 H 1.48505 * 109.46935 * 330.00024 * 15 13 11 19 19 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 20 20 C 1.52998 * 109.47320 * 89.99349 * 19 9 7 21 21 C 1.47196 * 109.47171 * 180.02562 * 20 19 9 22 22 N 9.30155 * 63.51137 * 347.41641 * 2 1 3 23 23 C 1.38261 * 120.09603 * 0.25365 * 5 4 3 24 24 C 1.38257 * 120.12452 * 359.49151 * 23 5 4 25 25 C 1.38336 * 120.02872 * 0.50580 * 24 23 5 26 26 F 1.35104 * 120.04848 * 179.72502 * 25 24 23 27 27 H 1.08997 * 109.47159 * 299.99165 * 1 2 3 28 28 H 1.09003 * 109.47744 * 59.99764 * 1 2 3 29 29 H 1.09001 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.01678 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.47210 * 330.00343 * 6 5 4 32 32 H 1.08994 * 109.47551 * 209.99996 * 6 5 4 33 33 H 1.09001 * 109.47567 * 210.00057 * 10 9 7 34 34 H 1.09005 * 109.47076 * 330.00563 * 10 9 7 35 35 H 0.97004 * 119.99796 * 179.97438 * 14 13 11 36 36 H 1.08994 * 109.46996 * 209.99677 * 19 9 7 37 37 H 1.09001 * 109.46578 * 329.99540 * 19 9 7 38 38 H 1.08997 * 109.47106 * 300.00561 * 20 19 9 39 39 H 1.09004 * 109.46895 * 60.00075 * 20 19 9 40 40 H 1.08002 * 119.93835 * 179.73981 * 23 5 4 41 41 H 1.07997 * 119.99053 * 180.23109 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6053 0.0011 6 6 1.1018 4.8698 0.0011 7 6 0.8280 5.2909 1.4219 8 8 1.2568 4.6296 2.3438 9 7 0.1119 6.4058 1.6682 10 6 -0.1491 6.8185 3.0494 11 6 0.9564 7.7285 3.5192 12 1 1.7717 7.9752 2.8552 13 6 0.9271 8.2463 4.7968 14 7 1.8917 9.0409 5.2065 15 14 -0.4826 7.8192 5.9455 16 1 -0.1403 6.5967 6.7160 17 1 -0.7156 8.9465 6.8837 18 1 -1.7126 7.5749 5.1502 19 6 -0.4057 7.2049 0.5548 20 6 -1.7991 6.7028 0.1710 21 6 -2.3188 7.5054 -0.9481 22 7 -2.7197 8.1251 -1.8137 23 6 3.3022 3.6777 -0.0042 24 6 4.0579 2.5199 0.0005 25 6 3.4333 1.2856 0.0001 26 9 4.1713 0.1540 -0.0009 27 1 -0.3633 0.5137 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2136 2.3200 0.0005 31 1 0.1575 4.6907 -0.5131 32 1 1.6510 5.6589 -0.5123 33 1 -1.1006 7.3483 3.0968 34 1 -0.1914 5.9376 3.6901 35 1 1.8709 9.4055 6.1052 36 1 -0.4665 8.2508 0.8556 37 1 0.2627 7.1113 -0.3011 38 1 -1.7383 5.6569 -0.1297 39 1 -2.4675 6.7965 1.0270 40 1 3.7914 4.6406 -0.0080 41 1 5.1362 2.5791 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180425122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:06 Heat of formation + Delta-G solvation = -84.854527 kcal Electronic energy + Delta-G solvation = -26275.008619 eV Core-core repulsion = 22262.378542 eV Total energy + Delta-G solvation = -4012.630078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.80763 -41.30675 -40.49445 -38.52195 -37.86755 -36.62506 -34.81578 -33.50270 -32.23534 -31.27825 -30.17581 -28.71323 -27.55877 -25.16640 -24.39397 -23.53650 -22.61342 -19.97499 -19.14796 -18.99878 -18.42069 -18.09857 -17.93922 -17.71696 -17.12308 -16.98658 -16.24922 -16.01785 -15.74301 -15.65340 -15.46282 -15.30145 -15.05178 -14.80824 -14.51290 -14.31811 -13.97141 -13.73848 -13.49957 -13.37525 -13.19595 -13.07312 -12.95423 -12.72268 -12.61486 -12.40331 -12.36459 -12.07060 -11.98212 -11.92883 -11.76642 -11.65555 -10.74839 -10.62747 -9.80023 -9.40071 -9.14222 -8.25429 -6.29301 0.09790 0.30798 1.39728 1.43982 1.50734 1.74259 1.90805 1.91684 2.22403 2.29595 2.38299 2.64324 3.10632 3.24569 3.26466 3.59836 3.77533 3.92087 4.09460 4.15492 4.18282 4.26410 4.33105 4.41943 4.48150 4.58355 4.66048 4.71805 4.75403 4.88296 4.93324 4.97052 5.00130 5.11227 5.18823 5.21783 5.51572 5.56632 5.68373 5.69248 6.31584 6.32481 6.67859 6.74115 6.76635 7.31575 7.52133 8.91392 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.003858 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.526754 B = 7255.457689 C = 8710.827326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.084 3.916 4 C -0.166 4.166 5 C -0.037 4.037 6 C -0.098 4.098 7 C 0.507 3.493 8 O -0.581 6.581 9 N -0.594 5.594 10 C 0.222 3.778 11 C -0.530 4.530 12 H 0.032 0.968 13 C 0.008 3.992 14 N -0.950 5.950 15 Si 0.941 3.059 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.225 1.225 19 C 0.109 3.891 20 C -0.038 4.038 21 C 0.245 3.755 22 N -0.495 5.495 23 C -0.124 4.124 24 C -0.116 4.116 25 C 0.033 3.967 26 F -0.148 7.148 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.163 0.837 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.059 0.941 34 H 0.023 0.977 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.126 0.874 40 H 0.144 0.856 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 -13.651 -14.533 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.038 3.962 4 C -0.185 4.185 5 C -0.037 4.037 6 C -0.137 4.137 7 C 0.296 3.704 8 O -0.460 6.460 9 N -0.324 5.324 10 C 0.100 3.900 11 C -0.569 4.569 12 H 0.050 0.950 13 C -0.189 4.189 14 N -0.591 5.591 15 Si 0.764 3.236 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.147 1.147 19 C -0.015 4.015 20 C -0.079 4.079 21 C -0.072 4.072 22 N -0.173 5.173 23 C -0.143 4.143 24 C -0.135 4.135 25 C 0.013 3.987 26 F -0.127 7.127 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.180 0.820 31 H 0.165 0.835 32 H 0.147 0.853 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.127 0.873 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.162 0.838 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.357 -13.201 -15.205 21.438 hybrid contribution 0.327 -0.050 1.536 1.571 sum -7.030 -13.250 -13.669 20.294 Atomic orbital electron populations 1.23427 0.75809 1.05855 1.02696 1.86088 1.24073 1.25819 1.88849 1.19092 0.90770 0.86304 1.00010 1.21198 1.01359 0.90136 1.05757 1.19438 0.93758 0.94180 0.96356 1.20905 1.03646 0.95942 0.93164 1.21081 0.77338 0.80113 0.91869 1.90717 1.51608 1.55299 1.48412 1.47833 1.52740 1.24619 1.07257 1.19385 0.95904 0.94408 0.80340 1.21654 1.08414 1.27979 0.98836 0.95010 1.25837 0.98790 0.94520 0.99788 1.70065 1.35203 1.34615 1.19222 0.85816 0.80986 0.77531 0.79225 1.20719 1.21180 1.14745 1.21582 0.93834 0.96296 0.89814 1.19893 0.96977 0.99278 0.91733 1.29307 0.92033 0.92524 0.93347 1.81352 1.10978 1.11436 1.13540 1.21087 0.93527 0.98657 1.00988 1.21167 1.01966 0.89737 1.00592 1.17328 0.86683 0.83097 1.11545 1.91435 1.76765 1.49814 1.94696 0.92039 0.90441 0.86189 0.81986 0.83520 0.85270 0.92277 0.95846 0.92661 0.90039 0.87290 0.83787 0.85574 0.83811 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -8.03 10.36 -93.02 -0.96 -8.99 16 3 C 0.08 2.16 6.69 22.53 0.15 2.31 16 4 C -0.17 -3.58 8.69 22.36 0.19 -3.38 16 5 C -0.04 -0.82 4.37 -19.87 -0.09 -0.91 16 6 C -0.10 -1.75 4.38 29.10 0.13 -1.62 16 7 C 0.51 15.41 7.67 87.66 0.67 16.08 16 8 O -0.58 -24.61 15.61 -3.04 -0.05 -24.65 16 9 N -0.59 -17.74 2.46 -826.15 -2.03 -19.77 16 10 C 0.22 8.94 4.23 85.63 0.36 9.31 16 11 C -0.53 -28.17 9.94 25.60 0.25 -27.92 16 12 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 13 C 0.01 0.45 5.47 84.66 0.46 0.91 16 14 N -0.95 -57.97 13.96 21.45 0.30 -57.67 16 15 Si 0.94 41.31 27.47 68.60 1.88 43.19 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.22 -8.32 6.54 99.48 0.65 -7.67 16 19 C 0.11 2.08 5.17 86.38 0.45 2.52 16 20 C -0.04 -0.44 6.03 28.79 0.17 -0.26 16 21 C 0.25 4.18 15.44 89.42 1.38 5.56 16 22 N -0.49 -12.00 18.55 20.02 0.37 -11.63 16 23 C -0.12 -2.96 9.69 22.28 0.22 -2.75 16 24 C -0.12 -2.84 10.02 22.30 0.22 -2.62 16 25 C 0.03 0.92 7.31 22.45 0.16 1.08 16 26 F -0.15 -4.41 17.11 44.97 0.77 -3.64 16 27 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 28 H 0.08 0.73 7.66 -2.39 -0.02 0.71 16 29 H 0.12 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.16 2.45 6.30 -2.91 -0.02 2.43 16 31 H 0.15 1.23 7.16 -2.38 -0.02 1.22 16 32 H 0.13 1.79 7.34 -2.39 -0.02 1.77 16 33 H 0.06 2.08 7.13 -2.39 -0.02 2.07 16 34 H 0.02 1.04 6.85 -2.38 -0.02 1.02 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.08 1.86 8.07 -2.39 -0.02 1.84 16 37 H 0.11 1.47 6.43 -2.39 -0.02 1.46 16 38 H 0.14 0.70 7.24 -2.39 -0.02 0.68 16 39 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -83.21 361.80 7.15 -76.07 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.01 Total: 7.45 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.85 Total: -0.35 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -1.36 Total: -89.07 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -1.01 Total: -33.65 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.77 Total: -3.64 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.88 Total: 43.19 kcal Total: -83.21 7.15 -76.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180425122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.789 kcal (2) G-P(sol) polarization free energy of solvation -83.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds