Wall clock time and date at job start Tue Mar 31 2020 13:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45755 * 117.95149 * 2 1 4 4 C 1.52910 * 110.49302 * 160.92495 * 3 2 1 5 5 C 1.53350 * 108.67444 * 50.75028 * 4 3 2 6 6 H 1.09004 * 109.66978 * 52.24421 * 5 4 3 7 7 C 1.50698 * 109.67242 * 172.73589 * 5 4 3 8 8 O 1.21284 * 120.00504 * 359.50501 * 7 5 4 9 9 N 1.34783 * 119.99895 * 179.50068 * 7 5 4 10 10 C 1.40009 * 120.00010 * 174.40752 * 9 7 5 11 11 C 1.39370 * 119.90774 * 325.37750 * 10 9 7 12 12 C 1.38369 * 120.46621 * 179.97438 * 11 10 9 13 13 C 1.38004 * 120.28887 * 359.97438 * 12 11 10 14 14 F 1.35102 * 120.09577 * 180.02562 * 13 12 11 15 15 C 1.41012 * 119.81184 * 0.02562 * 13 12 11 16 16 C 1.41298 * 120.22622 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00245 * 34.31607 * 16 15 13 18 18 C 1.39918 * 119.99483 * 214.31322 * 16 15 13 19 19 N 1.30854 * 120.00745 * 5.47511 * 18 16 15 20 20 Si 1.86807 * 119.99838 * 185.47620 * 18 16 15 21 21 H 1.48496 * 109.47199 * 59.99935 * 20 18 16 22 22 H 1.48496 * 109.47004 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46989 * 299.99885 * 20 18 16 24 24 C 1.38142 * 119.91281 * 145.35485 * 10 9 7 25 25 C 1.53067 * 108.45580 * 292.49262 * 5 4 3 26 26 C 1.33354 * 117.94522 * 180.02562 * 2 1 3 27 27 O 1.21279 * 118.24759 * 2.20636 * 26 2 1 28 28 H 1.09000 * 109.47114 * 90.00161 * 1 2 3 29 29 H 1.08994 * 109.46951 * 210.00037 * 1 2 3 30 30 H 1.08992 * 109.46924 * 330.00260 * 1 2 3 31 31 H 1.09001 * 109.29668 * 40.60871 * 3 2 1 32 32 H 1.09004 * 109.29850 * 281.24146 * 3 2 1 33 33 H 1.09004 * 109.60221 * 291.00083 * 4 3 2 34 34 H 1.08996 * 109.74127 * 170.59350 * 4 3 2 35 35 H 0.96997 * 119.99699 * 354.41186 * 9 7 5 36 36 H 1.07999 * 119.77106 * 359.69825 * 11 10 9 37 37 H 1.07996 * 119.85581 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00425 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.13923 * 0.04563 * 24 10 9 40 40 H 1.08997 * 109.39885 * 169.01481 * 25 5 4 41 41 H 1.09009 * 109.39698 * 288.75138 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1482 1.2875 0.0000 4 6 3.5949 1.1259 0.4681 5 6 4.2493 -0.0014 -0.3397 6 1 4.1093 0.1816 -1.4051 7 6 5.7217 -0.0626 -0.0246 8 8 6.2069 0.7234 0.7614 9 7 6.4995 -0.9908 -0.6163 10 6 7.8849 -0.9746 -0.4151 11 6 8.5526 0.2406 -0.2742 12 6 9.9214 0.2701 -0.0744 13 6 10.6411 -0.9058 -0.0119 14 9 11.9775 -0.8725 0.1839 15 6 9.9778 -2.1421 -0.1530 16 6 10.7060 -3.3513 -0.0899 17 1 11.5607 -3.4335 0.5652 18 6 10.3197 -4.4423 -0.8761 19 7 9.3523 -4.3111 -1.7475 20 14 11.1848 -6.0865 -0.6818 21 1 11.0185 -6.5718 0.7117 22 1 10.5938 -7.0711 -1.6233 23 1 12.6304 -5.9234 -0.9800 24 6 8.5864 -2.1632 -0.3564 25 6 3.5839 -1.3244 0.0477 26 6 2.0899 -1.1780 -0.0005 27 8 1.4158 -2.1854 -0.0421 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6271 1.9718 0.6696 32 1 2.1399 1.6997 -1.0090 33 1 3.6101 0.8725 1.5282 34 1 4.1402 2.0557 0.3065 35 1 6.0994 -1.6699 -1.1816 36 1 7.9983 1.1661 -0.3257 37 1 10.4288 1.2173 0.0332 38 1 9.0843 -5.0675 -2.2923 39 1 8.0685 -3.1046 -0.4660 40 1 3.8946 -2.1034 -0.6485 41 1 3.8882 -1.6006 1.0574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180637050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:39 Heat of formation + Delta-G solvation = -101.161146 kcal Electronic energy + Delta-G solvation = -26415.203237 eV Core-core repulsion = 22401.866051 eV Total energy + Delta-G solvation = -4013.337186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.26710 -40.96029 -39.65975 -37.39947 -36.43608 -34.37933 -34.29240 -33.28143 -30.08025 -29.82406 -28.45965 -27.30867 -25.38531 -24.89551 -23.35782 -21.71234 -20.95908 -19.78165 -18.94154 -17.64933 -17.42374 -16.75353 -16.53800 -16.12398 -15.88036 -15.77547 -15.16003 -15.01784 -14.54644 -14.39652 -14.03743 -13.94784 -13.58861 -13.49816 -13.02796 -12.82285 -12.64141 -12.61941 -12.09782 -12.04244 -11.93390 -11.71310 -11.56671 -11.29206 -11.23958 -11.20981 -11.04876 -10.75700 -10.32772 -10.20870 -9.72103 -9.53468 -9.30255 -9.03868 -9.03175 -7.57959 -7.04343 -6.74368 -4.52336 2.29492 2.42022 2.67809 2.72596 2.97249 3.04052 3.07768 3.16173 3.42224 3.89695 4.24400 4.32344 4.46886 4.49858 4.57139 4.92778 4.97928 5.01749 5.06081 5.24090 5.27490 5.33458 5.45940 5.51236 5.58403 5.70920 5.87168 5.92169 6.04360 6.07611 6.42996 6.60543 6.75800 6.79359 7.11286 7.14745 7.39001 7.45507 7.56390 7.84884 7.86738 7.91199 8.10019 8.37097 8.55407 8.68884 8.75021 10.14179 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.003217 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.676836 B = 8701.623899 C =10203.581983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.114 3.886 4 C -0.116 4.116 5 C -0.111 4.111 6 H 0.106 0.894 7 C 0.513 3.487 8 O -0.521 6.521 9 N -0.661 5.661 10 C 0.135 3.865 11 C -0.196 4.196 12 C -0.118 4.118 13 C -0.022 4.022 14 F -0.161 7.161 15 C 0.098 3.902 16 C -0.459 4.459 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.808 5.808 20 Si 0.917 3.083 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.149 4.149 25 C -0.127 4.127 26 C 0.521 3.479 27 O -0.551 6.551 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.404 0.596 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.281 0.719 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.086 7.679 -0.145 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.343 5.343 3 C -0.009 4.009 4 C -0.154 4.154 5 C -0.132 4.132 6 H 0.124 0.876 7 C 0.299 3.701 8 O -0.396 6.396 9 N -0.305 5.305 10 C 0.043 3.957 11 C -0.217 4.217 12 C -0.138 4.138 13 C -0.042 4.042 14 F -0.140 7.140 15 C 0.094 3.906 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.141 4.141 19 N -0.434 5.434 20 Si 0.741 3.259 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.171 4.171 25 C -0.167 4.167 26 C 0.310 3.690 27 O -0.429 6.429 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.239 0.761 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.148 0.852 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.180 7.600 0.207 16.978 hybrid contribution 0.418 -0.990 -0.374 1.138 sum -14.762 6.609 -0.167 16.175 Atomic orbital electron populations 1.21708 0.79493 1.03227 1.02084 1.47276 1.07524 1.06238 1.73262 1.21507 0.93145 0.84302 1.01971 1.21727 0.93333 0.99630 1.00748 1.21471 0.92569 0.96402 1.02786 0.87620 1.20323 0.87789 0.81307 0.80716 1.90722 1.74956 1.40426 1.33537 1.43492 1.06481 1.31575 1.48960 1.17603 0.80679 0.94568 1.02876 1.20118 0.92979 0.95828 1.12763 1.20397 0.94065 0.95834 1.03493 1.18050 0.76654 0.94432 1.15095 1.91282 1.31617 1.97377 1.93751 1.17368 0.91434 0.91120 0.90639 1.19390 1.12409 0.95251 1.21838 0.90053 1.25830 0.94400 1.00502 0.93383 1.69727 1.24306 1.32542 1.16868 0.86217 0.80298 0.80161 0.79204 1.18831 1.20274 1.18931 1.20950 0.93426 0.95383 1.07323 1.21694 0.90938 0.98099 1.06016 1.20009 0.90587 0.82711 0.75701 1.90729 1.66225 1.35794 1.50202 0.92604 0.90292 0.91236 0.90117 0.91318 0.90074 0.88366 0.76056 0.87152 0.87634 0.90779 0.85208 0.87275 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.22 59.85 0.61 1.21 16 2 N -0.61 -5.63 3.21 -182.86 -0.59 -6.22 16 3 C 0.11 0.77 6.39 -4.49 -0.03 0.74 16 4 C -0.12 -1.03 4.71 -26.60 -0.13 -1.16 16 5 C -0.11 -1.14 2.61 -91.56 -0.24 -1.38 16 6 H 0.11 0.91 8.13 -51.93 -0.42 0.49 16 7 C 0.51 7.74 6.85 -10.98 -0.08 7.67 16 8 O -0.52 -9.70 13.68 5.55 0.08 -9.63 16 9 N -0.66 -10.97 5.27 -9.90 -0.05 -11.02 16 10 C 0.13 2.89 6.24 -83.74 -0.52 2.37 16 11 C -0.20 -4.30 8.65 -39.11 -0.34 -4.64 16 12 C -0.12 -2.69 10.00 -39.62 -0.40 -3.09 16 13 C -0.02 -0.55 7.31 -38.62 -0.28 -0.83 16 14 F -0.16 -4.05 16.81 2.25 0.04 -4.02 16 15 C 0.10 2.56 5.51 -106.78 -0.59 1.97 16 16 C -0.46 -12.05 8.70 -37.79 -0.33 -12.38 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C 0.08 1.83 5.31 -17.34 -0.09 1.74 16 19 N -0.81 -19.75 10.96 55.55 0.61 -19.14 16 20 Si 0.92 18.51 29.56 -169.99 -5.03 13.49 16 21 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 C -0.15 -3.58 8.53 -38.71 -0.33 -3.91 16 25 C -0.13 -1.36 5.17 -28.09 -0.15 -1.50 16 26 C 0.52 6.22 7.47 -11.86 -0.09 6.13 16 27 O -0.55 -8.60 16.21 5.56 0.09 -8.51 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.73 7.20 -51.93 -0.37 0.36 16 30 H 0.07 0.35 7.86 -51.93 -0.41 -0.06 16 31 H 0.08 0.41 7.92 -51.93 -0.41 -0.01 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.10 0.88 7.89 -51.93 -0.41 0.47 16 35 H 0.40 5.64 8.39 -40.82 -0.34 5.30 16 36 H 0.11 2.32 6.52 -52.49 -0.34 1.98 16 37 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 38 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 39 H 0.13 3.13 6.47 -52.48 -0.34 2.79 16 40 H 0.11 1.09 7.84 -51.93 -0.41 0.69 16 41 H 0.11 1.21 8.09 -51.92 -0.42 0.78 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -31.56 345.59 -7.72 -39.28 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.11 Total: 7.62 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.97 Total: -7.06 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.03 Total: -36.38 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.14 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.02 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.56 -7.72 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180637050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.882 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds