Wall clock time and date at job start Tue Mar 31 2020 13:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45755 * 117.95149 * 2 1 4 4 C 1.52910 * 110.49302 * 160.92495 * 3 2 1 5 5 C 1.53350 * 108.67444 * 50.75028 * 4 3 2 6 6 H 1.09004 * 109.66978 * 52.24421 * 5 4 3 7 7 C 1.50698 * 109.67242 * 172.73589 * 5 4 3 8 8 O 1.21284 * 120.00504 * 359.50501 * 7 5 4 9 9 N 1.34783 * 119.99895 * 179.50068 * 7 5 4 10 10 C 1.40009 * 120.00010 * 174.40752 * 9 7 5 11 11 C 1.39370 * 119.90774 * 325.37750 * 10 9 7 12 12 C 1.38369 * 120.46621 * 179.97438 * 11 10 9 13 13 C 1.38004 * 120.28887 * 359.97438 * 12 11 10 14 14 F 1.35102 * 120.09577 * 180.02562 * 13 12 11 15 15 C 1.41012 * 119.81184 * 0.02562 * 13 12 11 16 16 C 1.41298 * 120.22622 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00245 * 34.31607 * 16 15 13 18 18 C 1.39918 * 119.99483 * 214.31322 * 16 15 13 19 19 N 1.30854 * 120.00745 * 5.47511 * 18 16 15 20 20 Si 1.86807 * 119.99838 * 185.47620 * 18 16 15 21 21 H 1.48496 * 109.47199 * 59.99935 * 20 18 16 22 22 H 1.48496 * 109.47004 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46989 * 299.99885 * 20 18 16 24 24 C 1.38142 * 119.91281 * 145.35485 * 10 9 7 25 25 C 1.53067 * 108.45580 * 292.49262 * 5 4 3 26 26 C 1.33354 * 117.94522 * 180.02562 * 2 1 3 27 27 O 1.21279 * 118.24759 * 2.20636 * 26 2 1 28 28 H 1.09000 * 109.47114 * 90.00161 * 1 2 3 29 29 H 1.08994 * 109.46951 * 210.00037 * 1 2 3 30 30 H 1.08992 * 109.46924 * 330.00260 * 1 2 3 31 31 H 1.09001 * 109.29668 * 40.60871 * 3 2 1 32 32 H 1.09004 * 109.29850 * 281.24146 * 3 2 1 33 33 H 1.09004 * 109.60221 * 291.00083 * 4 3 2 34 34 H 1.08996 * 109.74127 * 170.59350 * 4 3 2 35 35 H 0.96997 * 119.99699 * 354.41186 * 9 7 5 36 36 H 1.07999 * 119.77106 * 359.69825 * 11 10 9 37 37 H 1.07996 * 119.85581 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00425 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.13923 * 0.04563 * 24 10 9 40 40 H 1.08997 * 109.39885 * 169.01481 * 25 5 4 41 41 H 1.09009 * 109.39698 * 288.75138 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1482 1.2875 0.0000 4 6 3.5949 1.1259 0.4681 5 6 4.2493 -0.0014 -0.3397 6 1 4.1093 0.1816 -1.4051 7 6 5.7217 -0.0626 -0.0246 8 8 6.2069 0.7234 0.7614 9 7 6.4995 -0.9908 -0.6163 10 6 7.8849 -0.9746 -0.4151 11 6 8.5526 0.2406 -0.2742 12 6 9.9214 0.2701 -0.0744 13 6 10.6411 -0.9058 -0.0119 14 9 11.9775 -0.8725 0.1839 15 6 9.9778 -2.1421 -0.1530 16 6 10.7060 -3.3513 -0.0899 17 1 11.5607 -3.4335 0.5652 18 6 10.3197 -4.4423 -0.8761 19 7 9.3523 -4.3111 -1.7475 20 14 11.1848 -6.0865 -0.6818 21 1 11.0185 -6.5718 0.7117 22 1 10.5938 -7.0711 -1.6233 23 1 12.6304 -5.9234 -0.9800 24 6 8.5864 -2.1632 -0.3564 25 6 3.5839 -1.3244 0.0477 26 6 2.0899 -1.1780 -0.0005 27 8 1.4158 -2.1854 -0.0421 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6271 1.9718 0.6696 32 1 2.1399 1.6997 -1.0090 33 1 3.6101 0.8725 1.5282 34 1 4.1402 2.0557 0.3065 35 1 6.0994 -1.6699 -1.1816 36 1 7.9983 1.1661 -0.3257 37 1 10.4288 1.2173 0.0332 38 1 9.0843 -5.0675 -2.2923 39 1 8.0685 -3.1046 -0.4660 40 1 3.8946 -2.1034 -0.6485 41 1 3.8882 -1.6006 1.0574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180637050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:38 Heat of formation + Delta-G solvation = -120.737408 kcal Electronic energy + Delta-G solvation = -26416.052127 eV Core-core repulsion = 22401.866051 eV Total energy + Delta-G solvation = -4014.186076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.20773 -41.94959 -40.90858 -39.01939 -37.40255 -36.00323 -35.33610 -34.83206 -31.69388 -30.91527 -29.93246 -28.23795 -27.23928 -25.71799 -24.33759 -23.49198 -22.45040 -21.21847 -19.73154 -19.35986 -18.66267 -17.99414 -17.79105 -17.37001 -17.27865 -16.94290 -16.67621 -16.29581 -15.99722 -15.89578 -15.34110 -15.18667 -14.87584 -14.50566 -14.41593 -14.29427 -13.92789 -13.57590 -13.50359 -13.38701 -13.29116 -12.97547 -12.82159 -12.80059 -12.56875 -12.49215 -12.07949 -12.04296 -11.97567 -11.55074 -11.30986 -11.15396 -10.87275 -10.51227 -9.75482 -9.45091 -8.83269 -8.54221 -6.47334 0.59772 0.86155 1.39139 1.45380 1.49616 1.51857 1.66784 2.01636 2.14994 2.21180 2.69404 3.35528 3.44453 3.55663 3.65350 3.69975 4.00611 4.12465 4.19758 4.30980 4.36621 4.46689 4.60288 4.63559 4.65119 4.72140 4.80668 4.93180 4.97028 4.99402 5.01126 5.02806 5.22143 5.25308 5.40809 5.60101 5.72555 5.75894 5.96243 6.12458 6.37118 6.45367 6.64024 6.78098 6.83362 7.06014 7.22238 8.32646 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.003217 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.676836 B = 8701.623899 C =10203.581983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.605 5.605 3 C 0.115 3.885 4 C -0.114 4.114 5 C -0.094 4.094 6 H 0.134 0.866 7 C 0.516 3.484 8 O -0.553 6.553 9 N -0.659 5.659 10 C 0.147 3.853 11 C -0.196 4.196 12 C -0.114 4.114 13 C -0.057 4.057 14 F -0.169 7.169 15 C 0.071 3.929 16 C -0.498 4.498 17 H 0.068 0.932 18 C 0.040 3.960 19 N -0.826 5.826 20 Si 0.983 3.017 21 H -0.261 1.261 22 H -0.261 1.261 23 H -0.267 1.267 24 C -0.164 4.164 25 C -0.124 4.124 26 C 0.518 3.482 27 O -0.597 6.597 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.418 0.582 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.291 0.709 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.978 8.741 -0.874 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.336 5.336 3 C -0.006 4.006 4 C -0.153 4.153 5 C -0.116 4.116 6 H 0.151 0.849 7 C 0.304 3.696 8 O -0.431 6.431 9 N -0.304 5.304 10 C 0.054 3.946 11 C -0.217 4.217 12 C -0.134 4.134 13 C -0.078 4.078 14 F -0.148 7.148 15 C 0.067 3.933 16 C -0.528 4.528 17 H 0.086 0.914 18 C -0.174 4.174 19 N -0.452 5.452 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.185 1.185 23 H -0.191 1.191 24 C -0.185 4.185 25 C -0.164 4.164 26 C 0.307 3.693 27 O -0.479 6.479 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.255 0.745 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.116 8.713 -0.535 19.214 hybrid contribution 0.910 -1.182 -0.132 1.498 sum -16.206 7.531 -0.667 17.883 Atomic orbital electron populations 1.21849 0.78426 1.03782 1.02777 1.47413 1.08415 1.06309 1.71492 1.21700 0.91549 0.83347 1.04013 1.21737 0.94755 0.98945 0.99824 1.21454 0.88503 0.96906 1.04706 0.84856 1.21136 0.89403 0.79713 0.79315 1.90709 1.76046 1.41507 1.34790 1.43524 1.04694 1.32654 1.49498 1.17639 0.82967 0.93581 1.00453 1.20361 0.92811 0.96497 1.12063 1.20684 0.94494 0.96047 1.02129 1.18331 0.76735 0.95270 1.17431 1.91243 1.32064 1.97438 1.94040 1.17736 0.92610 0.91630 0.91276 1.19548 1.13074 0.96809 1.23373 0.91353 1.26574 0.95034 1.03290 0.92549 1.69749 1.24766 1.33826 1.16846 0.85224 0.78910 0.75984 0.79453 1.18558 1.18529 1.19143 1.20890 0.92931 0.96063 1.08647 1.21641 0.90570 0.98446 1.05766 1.20111 0.90685 0.83019 0.75490 1.90712 1.67010 1.37471 1.52688 0.91845 0.92411 0.88016 0.87410 0.88962 0.91313 0.87931 0.74464 0.85708 0.85216 0.89844 0.85893 0.86797 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.22 127.77 1.31 2.25 16 2 N -0.60 -9.48 3.21 -851.62 -2.73 -12.21 16 3 C 0.12 1.09 6.39 86.49 0.55 1.64 16 4 C -0.11 -1.68 4.71 30.68 0.14 -1.54 16 5 C -0.09 -1.70 2.61 -11.40 -0.03 -1.73 16 6 H 0.13 1.77 8.13 -2.39 -0.02 1.75 16 7 C 0.52 14.66 6.85 87.66 0.60 15.26 16 8 O -0.55 -19.77 13.68 -3.04 -0.04 -19.81 16 9 N -0.66 -21.06 5.27 -303.60 -1.60 -22.66 16 10 C 0.15 6.27 6.24 38.08 0.24 6.51 16 11 C -0.20 -8.47 8.65 22.57 0.20 -8.27 16 12 C -0.11 -5.18 10.00 22.25 0.22 -4.96 16 13 C -0.06 -2.97 7.31 22.89 0.17 -2.80 16 14 F -0.17 -8.77 16.81 44.97 0.76 -8.02 16 15 C 0.07 3.83 5.51 -21.26 -0.12 3.71 16 16 C -0.50 -27.16 8.70 23.43 0.20 -26.95 16 17 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 18 C 0.04 1.98 5.31 85.25 0.45 2.43 16 19 N -0.83 -40.65 10.96 21.82 0.24 -40.41 16 20 Si 0.98 38.10 29.56 68.60 2.03 40.13 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 22 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 23 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 24 C -0.16 -8.00 8.53 22.83 0.19 -7.80 16 25 C -0.12 -2.47 5.17 29.71 0.15 -2.32 16 26 C 0.52 11.61 7.47 87.72 0.66 12.26 16 27 O -0.60 -18.47 16.21 -3.02 -0.05 -18.52 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.01 7.20 -2.39 -0.02 0.99 16 30 H 0.10 0.63 7.86 -2.39 -0.02 0.61 16 31 H 0.11 0.54 7.92 -2.39 -0.02 0.53 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 1.21 8.12 -2.38 -0.02 1.19 16 34 H 0.10 1.49 7.89 -2.39 -0.02 1.47 16 35 H 0.42 11.11 8.39 -92.71 -0.78 10.33 16 36 H 0.13 5.02 6.52 -2.91 -0.02 5.01 16 37 H 0.13 5.12 8.06 -2.91 -0.02 5.09 16 38 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 39 H 0.12 6.08 6.47 -2.91 -0.02 6.06 16 40 H 0.11 2.14 7.84 -2.39 -0.02 2.12 16 41 H 0.10 2.17 8.09 -2.38 -0.02 2.15 16 Total: -1.00 -70.73 345.59 3.84 -66.89 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.30 Total: 26.91 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 4.94 Total: -12.30 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -4.09 Total: -75.28 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.09 Total: -38.32 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.76 Total: -8.02 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -70.73 3.84 -66.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180637050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.848 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds