Wall clock time and date at job start Tue Mar 31 2020 13:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45748 * 117.94811 * 2 1 4 4 C 1.52925 * 110.48660 * 199.07572 * 3 2 1 5 5 C 1.53348 * 108.81148 * 309.16571 * 4 3 2 6 6 H 1.08999 * 109.67037 * 307.87792 * 5 4 3 7 7 C 1.50692 * 109.67323 * 187.34932 * 5 4 3 8 8 O 1.21284 * 120.00571 * 359.97438 * 7 5 4 9 9 N 1.34775 * 119.99835 * 179.97438 * 7 5 4 10 10 C 1.40008 * 120.00357 * 174.87340 * 9 7 5 11 11 C 1.39366 * 119.91201 * 146.36157 * 10 9 7 12 12 C 1.38366 * 120.46795 * 179.97438 * 11 10 9 13 13 C 1.38003 * 120.29236 * 0.02562 * 12 11 10 14 14 F 1.35099 * 120.09604 * 179.97438 * 13 12 11 15 15 C 1.41012 * 119.80983 * 359.97438 * 13 12 11 16 16 C 1.41293 * 120.23072 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99706 * 331.47813 * 16 15 13 18 18 C 1.39914 * 120.00102 * 151.47439 * 16 15 13 19 19 N 1.30856 * 120.00095 * 348.99679 * 18 16 15 20 20 Si 1.86806 * 120.00117 * 168.98870 * 18 16 15 21 21 H 1.48500 * 109.46861 * 90.00056 * 20 18 16 22 22 H 1.48500 * 109.47344 * 210.00535 * 20 18 16 23 23 H 1.48504 * 109.47090 * 330.00519 * 20 18 16 24 24 C 1.38144 * 119.90909 * 326.09335 * 10 9 7 25 25 C 1.53384 * 108.25221 * 67.43627 * 5 4 3 26 26 C 1.33357 * 117.94337 * 180.02562 * 2 1 3 27 27 O 1.21282 * 118.25090 * 357.80101 * 26 2 1 28 28 H 1.08995 * 109.47346 * 89.99961 * 1 2 3 29 29 H 1.09001 * 109.46883 * 210.00315 * 1 2 3 30 30 H 1.08998 * 109.46772 * 330.00154 * 1 2 3 31 31 H 1.08997 * 109.30527 * 78.76739 * 3 2 1 32 32 H 1.08997 * 109.13685 * 319.27691 * 3 2 1 33 33 H 1.09005 * 109.60430 * 69.00232 * 4 3 2 34 34 H 1.09001 * 109.60319 * 189.32563 * 4 3 2 35 35 H 0.97003 * 120.00242 * 354.87795 * 9 7 5 36 36 H 1.07999 * 119.76550 * 0.02562 * 11 10 9 37 37 H 1.08007 * 119.85219 * 179.97438 * 12 11 10 38 38 H 0.96999 * 119.99914 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.14632 * 359.97438 * 24 10 9 40 40 H 1.08993 * 109.38633 * 191.05787 * 25 5 4 41 41 H 1.09006 * 109.32461 * 71.37254 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5949 1.1258 -0.4682 5 6 4.2530 0.0004 0.3392 6 1 4.1127 0.1827 1.4046 7 6 5.7253 -0.0566 0.0232 8 8 6.2060 0.7245 -0.7704 9 7 6.5081 -0.9757 0.6224 10 6 7.8521 -1.1001 0.2507 11 6 8.8067 -1.4532 1.2028 12 6 10.1381 -1.5798 0.8479 13 6 10.5356 -1.3568 -0.4547 14 9 11.8366 -1.4811 -0.7966 15 6 9.5798 -0.9989 -1.4277 16 6 9.9770 -0.7680 -2.7639 17 1 10.9740 -0.4114 -2.9769 18 6 9.0789 -1.0016 -3.8110 19 7 7.9555 -1.6320 -3.5812 20 14 9.4834 -0.4131 -5.5372 21 1 10.2211 -1.4782 -6.2630 22 1 8.2251 -0.1008 -6.2613 23 1 10.3258 0.8074 -5.4594 24 6 8.2277 -0.8778 -1.0600 25 6 3.5838 -1.3241 -0.0490 26 6 2.0899 -1.1781 -0.0005 27 8 1.4158 -2.1855 0.0400 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 2.1400 1.6997 1.0090 32 1 1.6262 1.9689 -0.6718 33 1 3.6101 0.8724 -1.5283 34 1 4.1377 2.0572 -0.3070 35 1 6.1402 -1.5512 1.3112 36 1 8.5049 -1.6301 2.2245 37 1 10.8696 -1.8536 1.5939 38 1 7.3328 -1.7936 -4.3071 39 1 7.4869 -0.6088 -1.7984 40 1 3.8942 -2.1038 0.6465 41 1 3.8880 -1.5995 -1.0589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180637051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:42 Heat of formation + Delta-G solvation = -99.391576 kcal Electronic energy + Delta-G solvation = -26813.310608 eV Core-core repulsion = 22800.050157 eV Total energy + Delta-G solvation = -4013.260451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.21299 -40.86718 -39.56517 -37.31194 -36.34953 -34.40564 -34.17093 -33.22919 -29.99917 -29.78125 -28.37593 -27.19370 -25.45035 -24.81167 -23.29106 -21.73171 -20.81077 -19.63219 -18.86313 -17.92677 -17.07995 -16.71444 -16.38810 -16.05070 -15.91906 -15.70032 -15.22354 -14.83221 -14.41411 -14.33813 -14.00215 -13.86113 -13.50323 -13.45094 -12.99857 -12.83532 -12.57898 -12.54109 -11.93719 -11.92480 -11.86435 -11.72766 -11.63374 -11.23982 -11.16628 -11.14471 -10.96092 -10.50948 -10.37452 -10.08356 -9.79657 -9.45747 -9.25064 -8.96129 -8.90966 -7.56834 -6.94970 -6.76211 -4.46146 2.38209 2.48821 2.72643 2.79580 3.04377 3.06849 3.12593 3.21492 3.49629 3.91575 4.32568 4.42162 4.51359 4.58106 4.61254 4.99419 5.02438 5.08031 5.15228 5.29376 5.35911 5.45412 5.55354 5.58176 5.66754 5.80441 5.85992 6.03732 6.05247 6.13538 6.34176 6.67379 6.84226 6.91027 7.13559 7.21168 7.37277 7.48167 7.62736 7.96163 7.97500 8.03693 8.17765 8.41691 8.69877 8.73759 8.79580 10.13096 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.003767 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.466749 B = 7431.821581 C = 8640.176942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.114 3.886 4 C -0.118 4.118 5 C -0.108 4.108 6 H 0.102 0.898 7 C 0.511 3.489 8 O -0.508 6.508 9 N -0.664 5.664 10 C 0.133 3.867 11 C -0.238 4.238 12 C -0.110 4.110 13 C -0.037 4.037 14 F -0.163 7.163 15 C 0.094 3.906 16 C -0.448 4.448 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.791 5.791 20 Si 0.915 3.085 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.131 4.131 25 C -0.126 4.126 26 C 0.522 3.478 27 O -0.553 6.553 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.399 0.601 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.282 0.718 39 H 0.148 0.852 40 H 0.107 0.893 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.316 4.720 6.940 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.343 5.343 3 C -0.008 4.008 4 C -0.156 4.156 5 C -0.130 4.130 6 H 0.120 0.880 7 C 0.296 3.704 8 O -0.381 6.381 9 N -0.308 5.308 10 C 0.040 3.960 11 C -0.260 4.260 12 C -0.130 4.130 13 C -0.057 4.057 14 F -0.143 7.143 15 C 0.090 3.910 16 C -0.477 4.477 17 H 0.101 0.899 18 C -0.143 4.143 19 N -0.416 5.416 20 Si 0.740 3.260 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.153 4.153 25 C -0.166 4.166 26 C 0.311 3.689 27 O -0.432 6.432 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.233 0.767 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.166 0.834 40 H 0.125 0.875 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.509 4.682 6.222 15.593 hybrid contribution 0.187 -0.111 -0.386 0.443 sum -13.322 4.572 5.837 15.246 Atomic orbital electron populations 1.21695 0.79613 1.03239 1.02066 1.47283 1.07486 1.06278 1.73279 1.21505 0.93210 0.84320 1.01804 1.21737 0.93198 0.99675 1.00990 1.21479 0.92673 0.96424 1.02436 0.87973 1.20275 0.87686 0.80809 0.81599 1.90779 1.74748 1.39388 1.33228 1.43390 1.09983 1.36815 1.40575 1.17600 0.81491 1.03037 0.93828 1.19853 0.91934 1.17128 0.97050 1.20248 0.95576 1.02980 0.94157 1.17925 0.78522 1.14787 0.94494 1.91268 1.34873 1.94800 1.93311 1.17514 0.90704 0.90148 0.92614 1.19501 0.99847 1.38184 0.90159 0.89880 1.25892 0.93986 0.92609 1.01836 1.69763 1.08256 1.28853 1.34710 0.86184 0.78955 0.80237 0.80665 1.19354 1.19991 1.18322 1.21301 0.97043 1.04079 0.92854 1.21719 0.90693 0.97937 1.06232 1.20034 0.90623 0.82706 0.75566 1.90717 1.66257 1.35794 1.50414 0.92643 0.90161 0.91276 0.91351 0.90150 0.89918 0.88391 0.76722 0.88239 0.87748 0.90733 0.83415 0.87488 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.24 59.85 0.61 1.25 16 2 N -0.61 -6.12 3.21 -182.86 -0.59 -6.71 16 3 C 0.11 0.89 6.33 -4.49 -0.03 0.86 16 4 C -0.12 -1.22 4.69 -26.59 -0.12 -1.34 16 5 C -0.11 -1.22 2.61 -91.40 -0.24 -1.46 16 6 H 0.10 0.90 8.13 -51.93 -0.42 0.48 16 7 C 0.51 8.44 6.87 -10.99 -0.08 8.36 16 8 O -0.51 -10.73 13.61 5.55 0.08 -10.65 16 9 N -0.66 -11.16 5.25 -9.90 -0.05 -11.21 16 10 C 0.13 2.89 6.26 -83.74 -0.52 2.37 16 11 C -0.24 -4.92 9.96 -39.11 -0.39 -5.31 16 12 C -0.11 -2.44 10.00 -39.62 -0.40 -2.84 16 13 C -0.04 -0.94 7.31 -38.62 -0.28 -1.22 16 14 F -0.16 -4.15 16.75 2.25 0.04 -4.11 16 15 C 0.09 2.56 5.56 -106.78 -0.59 1.96 16 16 C -0.45 -12.23 8.76 -37.79 -0.33 -12.56 16 17 H 0.08 2.23 7.76 -52.48 -0.41 1.82 16 18 C 0.07 1.91 5.25 -17.34 -0.09 1.82 16 19 N -0.79 -20.46 10.82 55.55 0.60 -19.86 16 20 Si 0.92 19.17 29.57 -169.99 -5.03 14.15 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 24 C -0.13 -3.37 7.26 -38.71 -0.28 -3.66 16 25 C -0.13 -1.48 5.29 -27.93 -0.15 -1.62 16 26 C 0.52 6.65 7.47 -11.87 -0.09 6.56 16 27 O -0.55 -8.97 16.18 5.56 0.09 -8.88 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.78 7.13 -51.93 -0.37 0.41 16 30 H 0.07 0.39 8.01 -51.93 -0.42 -0.03 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 34 H 0.10 1.02 7.90 -51.93 -0.41 0.61 16 35 H 0.40 5.11 8.82 -40.82 -0.36 4.75 16 36 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 39 H 0.15 4.02 4.57 -52.48 -0.24 3.78 16 40 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.11 1.46 8.10 -51.93 -0.42 1.04 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -33.00 346.07 -7.76 -40.76 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.14 Total: 8.14 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.98 Total: -6.84 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.04 Total: -37.79 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.17 Total: -19.53 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.00 -7.76 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180637051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.630 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds