Wall clock time and date at job start Tue Mar 31 2020 13:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45748 * 117.94811 * 2 1 4 4 C 1.52925 * 110.48660 * 199.07572 * 3 2 1 5 5 C 1.53348 * 108.81148 * 309.16571 * 4 3 2 6 6 H 1.08999 * 109.67037 * 307.87792 * 5 4 3 7 7 C 1.50692 * 109.67323 * 187.34932 * 5 4 3 8 8 O 1.21284 * 120.00571 * 359.97438 * 7 5 4 9 9 N 1.34775 * 119.99835 * 179.97438 * 7 5 4 10 10 C 1.40008 * 120.00357 * 174.87340 * 9 7 5 11 11 C 1.39366 * 119.91201 * 146.36157 * 10 9 7 12 12 C 1.38366 * 120.46795 * 179.97438 * 11 10 9 13 13 C 1.38003 * 120.29236 * 0.02562 * 12 11 10 14 14 F 1.35099 * 120.09604 * 179.97438 * 13 12 11 15 15 C 1.41012 * 119.80983 * 359.97438 * 13 12 11 16 16 C 1.41293 * 120.23072 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99706 * 331.47813 * 16 15 13 18 18 C 1.39914 * 120.00102 * 151.47439 * 16 15 13 19 19 N 1.30856 * 120.00095 * 348.99679 * 18 16 15 20 20 Si 1.86806 * 120.00117 * 168.98870 * 18 16 15 21 21 H 1.48500 * 109.46861 * 90.00056 * 20 18 16 22 22 H 1.48500 * 109.47344 * 210.00535 * 20 18 16 23 23 H 1.48504 * 109.47090 * 330.00519 * 20 18 16 24 24 C 1.38144 * 119.90909 * 326.09335 * 10 9 7 25 25 C 1.53384 * 108.25221 * 67.43627 * 5 4 3 26 26 C 1.33357 * 117.94337 * 180.02562 * 2 1 3 27 27 O 1.21282 * 118.25090 * 357.80101 * 26 2 1 28 28 H 1.08995 * 109.47346 * 89.99961 * 1 2 3 29 29 H 1.09001 * 109.46883 * 210.00315 * 1 2 3 30 30 H 1.08998 * 109.46772 * 330.00154 * 1 2 3 31 31 H 1.08997 * 109.30527 * 78.76739 * 3 2 1 32 32 H 1.08997 * 109.13685 * 319.27691 * 3 2 1 33 33 H 1.09005 * 109.60430 * 69.00232 * 4 3 2 34 34 H 1.09001 * 109.60319 * 189.32563 * 4 3 2 35 35 H 0.97003 * 120.00242 * 354.87795 * 9 7 5 36 36 H 1.07999 * 119.76550 * 0.02562 * 11 10 9 37 37 H 1.08007 * 119.85219 * 179.97438 * 12 11 10 38 38 H 0.96999 * 119.99914 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.14632 * 359.97438 * 24 10 9 40 40 H 1.08993 * 109.38633 * 191.05787 * 25 5 4 41 41 H 1.09006 * 109.32461 * 71.37254 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5949 1.1258 -0.4682 5 6 4.2530 0.0004 0.3392 6 1 4.1127 0.1827 1.4046 7 6 5.7253 -0.0566 0.0232 8 8 6.2060 0.7245 -0.7704 9 7 6.5081 -0.9757 0.6224 10 6 7.8521 -1.1001 0.2507 11 6 8.8067 -1.4532 1.2028 12 6 10.1381 -1.5798 0.8479 13 6 10.5356 -1.3568 -0.4547 14 9 11.8366 -1.4811 -0.7966 15 6 9.5798 -0.9989 -1.4277 16 6 9.9770 -0.7680 -2.7639 17 1 10.9740 -0.4114 -2.9769 18 6 9.0789 -1.0016 -3.8110 19 7 7.9555 -1.6320 -3.5812 20 14 9.4834 -0.4131 -5.5372 21 1 10.2211 -1.4782 -6.2630 22 1 8.2251 -0.1008 -6.2613 23 1 10.3258 0.8074 -5.4594 24 6 8.2277 -0.8778 -1.0600 25 6 3.5838 -1.3241 -0.0490 26 6 2.0899 -1.1781 -0.0005 27 8 1.4158 -2.1855 0.0400 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 2.1400 1.6997 1.0090 32 1 1.6262 1.9689 -0.6718 33 1 3.6101 0.8724 -1.5283 34 1 4.1377 2.0572 -0.3070 35 1 6.1402 -1.5512 1.3112 36 1 8.5049 -1.6301 2.2245 37 1 10.8696 -1.8536 1.5939 38 1 7.3328 -1.7936 -4.3071 39 1 7.4869 -0.6088 -1.7984 40 1 3.8942 -2.1038 0.6465 41 1 3.8880 -1.5995 -1.0589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180637051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:41 Heat of formation + Delta-G solvation = -121.165920 kcal Electronic energy + Delta-G solvation = -26814.254814 eV Core-core repulsion = 22800.050157 eV Total energy + Delta-G solvation = -4014.204658 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.17387 -41.92502 -40.88700 -38.95699 -37.39086 -36.12220 -35.24866 -34.83497 -31.68920 -30.88362 -29.87888 -28.19668 -27.33720 -25.71008 -24.40301 -23.44081 -22.40303 -21.09662 -19.79908 -19.57799 -18.38441 -17.96409 -17.84312 -17.37178 -17.29131 -16.88557 -16.72512 -16.34141 -15.94266 -15.84745 -15.33373 -15.18739 -14.75077 -14.66738 -14.34842 -14.29260 -13.74417 -13.63432 -13.59374 -13.47886 -13.27916 -12.90045 -12.83825 -12.71057 -12.61798 -12.30291 -12.17841 -12.04732 -11.99609 -11.60339 -11.32033 -11.23002 -10.76874 -10.48583 -9.74998 -9.45453 -8.76303 -8.59164 -6.46330 0.63916 0.91380 1.32538 1.40940 1.47340 1.51214 1.71205 2.01566 2.16579 2.19678 2.66646 3.37561 3.50638 3.57082 3.65845 3.69380 4.05697 4.14423 4.19451 4.32977 4.34862 4.47347 4.58743 4.63302 4.64983 4.74664 4.79539 4.96953 4.97886 4.99062 5.04647 5.12425 5.21526 5.23730 5.39456 5.63084 5.75198 5.78398 6.06566 6.20879 6.36116 6.51952 6.63771 6.79293 6.87559 7.05176 7.33687 8.26458 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.003767 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.466749 B = 7431.821581 C = 8640.176942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.605 5.605 3 C 0.118 3.882 4 C -0.118 4.118 5 C -0.091 4.091 6 H 0.142 0.858 7 C 0.509 3.491 8 O -0.556 6.556 9 N -0.655 5.655 10 C 0.138 3.862 11 C -0.218 4.218 12 C -0.107 4.107 13 C -0.070 4.070 14 F -0.171 7.171 15 C 0.060 3.940 16 C -0.494 4.494 17 H 0.069 0.931 18 C 0.036 3.964 19 N -0.820 5.820 20 Si 0.982 3.018 21 H -0.259 1.259 22 H -0.263 1.263 23 H -0.261 1.261 24 C -0.158 4.158 25 C -0.121 4.121 26 C 0.519 3.481 27 O -0.595 6.595 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.422 0.578 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.287 0.713 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 5.545 9.130 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.337 5.337 3 C -0.003 4.003 4 C -0.156 4.156 5 C -0.112 4.112 6 H 0.160 0.840 7 C 0.297 3.703 8 O -0.433 6.433 9 N -0.300 5.300 10 C 0.044 3.956 11 C -0.239 4.239 12 C -0.126 4.126 13 C -0.091 4.091 14 F -0.150 7.150 15 C 0.057 3.943 16 C -0.524 4.524 17 H 0.088 0.912 18 C -0.179 4.179 19 N -0.445 5.445 20 Si 0.802 3.198 21 H -0.183 1.183 22 H -0.187 1.187 23 H -0.185 1.185 24 C -0.179 4.179 25 C -0.161 4.161 26 C 0.308 3.692 27 O -0.478 6.478 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.260 0.740 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.357 5.519 8.459 18.381 hybrid contribution 0.701 -0.348 -0.897 1.190 sum -14.657 5.171 7.562 17.284 Atomic orbital electron populations 1.21845 0.78360 1.04175 1.02520 1.47413 1.08464 1.06257 1.71529 1.21675 0.91099 0.83426 1.04109 1.21731 0.95168 0.99177 0.99557 1.21460 0.88285 0.96605 1.04838 0.84020 1.21216 0.89540 0.79491 0.80085 1.90771 1.76083 1.41329 1.35134 1.43347 1.08227 1.37341 1.41115 1.17737 0.84124 1.00969 0.92744 1.20393 0.90869 1.13816 0.98836 1.20675 0.97150 1.01489 0.93320 1.18307 0.78232 1.16590 0.95950 1.91230 1.35210 1.95020 1.93581 1.17883 0.92023 0.91126 0.93280 1.19653 1.00089 1.41060 0.91581 0.91242 1.26681 0.93628 0.92205 1.05393 1.69816 1.09050 1.29677 1.35985 0.85202 0.79099 0.79691 0.75775 1.18315 1.18701 1.18467 1.21195 0.96210 1.06107 0.94430 1.21649 0.90562 0.98533 1.05385 1.20075 0.90596 0.83061 0.75439 1.90702 1.66948 1.37354 1.52753 0.92467 0.91814 0.87734 0.88211 0.87873 0.92368 0.88279 0.74009 0.83331 0.84371 0.90213 0.85585 0.86152 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.24 127.77 1.31 2.33 16 2 N -0.60 -10.51 3.21 -851.62 -2.73 -13.24 16 3 C 0.12 1.39 6.33 86.50 0.55 1.93 16 4 C -0.12 -2.21 4.69 30.69 0.14 -2.07 16 5 C -0.09 -1.84 2.61 -11.30 -0.03 -1.87 16 6 H 0.14 1.85 8.13 -2.39 -0.02 1.83 16 7 C 0.51 16.31 6.87 87.65 0.60 16.91 16 8 O -0.56 -23.96 13.61 -3.04 -0.04 -24.00 16 9 N -0.65 -20.77 5.25 -303.62 -1.59 -22.36 16 10 C 0.14 5.89 6.26 38.08 0.24 6.12 16 11 C -0.22 -8.36 9.96 22.57 0.22 -8.14 16 12 C -0.11 -4.56 10.00 22.24 0.22 -4.34 16 13 C -0.07 -3.67 7.31 22.89 0.17 -3.50 16 14 F -0.17 -8.97 16.75 44.97 0.75 -8.21 16 15 C 0.06 3.43 5.56 -21.26 -0.12 3.31 16 16 C -0.49 -28.64 8.76 23.43 0.21 -28.43 16 17 H 0.07 4.01 7.76 -2.91 -0.02 3.99 16 18 C 0.04 1.91 5.25 85.24 0.45 2.35 16 19 N -0.82 -44.42 10.82 21.82 0.24 -44.18 16 20 Si 0.98 40.79 29.57 68.60 2.03 42.82 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 C -0.16 -8.36 7.26 22.83 0.17 -8.20 16 25 C -0.12 -2.69 5.29 29.82 0.16 -2.53 16 26 C 0.52 12.48 7.47 87.72 0.66 13.13 16 27 O -0.60 -19.02 16.18 -3.04 -0.05 -19.06 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 1.14 7.13 -2.39 -0.02 1.12 16 30 H 0.10 0.72 8.01 -2.39 -0.02 0.70 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.06 1.38 8.12 -2.38 -0.02 1.36 16 34 H 0.10 1.88 7.90 -2.39 -0.02 1.86 16 35 H 0.42 9.36 8.82 -92.71 -0.82 8.55 16 36 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 39 H 0.13 7.22 4.57 -2.91 -0.01 7.20 16 40 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.09 2.39 8.10 -2.38 -0.02 2.37 16 Total: -1.00 -78.13 346.07 3.80 -74.33 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.26 Total: 26.90 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 4.94 Total: -12.99 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -4.09 Total: -79.79 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.09 Total: -43.06 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 0.75 Total: -8.21 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -78.13 3.80 -74.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180637051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.839 kcal (2) G-P(sol) polarization free energy of solvation -78.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds