Wall clock time and date at job start Tue Mar 31 2020 12:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36891 * 125.01676 * 2 1 4 4 C 1.34219 * 109.87673 * 179.97438 * 3 2 1 5 5 C 1.46567 * 106.88908 * 359.97438 * 4 3 2 6 6 C 1.39579 * 133.95267 * 180.02562 * 5 4 3 7 7 C 1.37869 * 119.99430 * 180.02562 * 6 5 4 8 8 C 1.38364 * 120.59378 * 359.73934 * 7 6 5 9 9 C 1.39328 * 120.49130 * 0.51918 * 8 7 6 10 10 C 1.47477 * 120.20727 * 179.76326 * 9 8 7 11 11 O 1.21605 * 119.99784 * 136.16276 * 10 9 8 12 12 N 1.34773 * 119.99809 * 316.43434 * 10 9 8 13 13 C 1.39864 * 119.99779 * 184.13565 * 12 10 9 14 14 C 1.39314 * 119.94850 * 324.33134 * 13 12 10 15 15 C 1.38484 * 120.42648 * 179.76145 * 14 13 12 16 16 C 1.37685 * 120.31931 * 0.51797 * 15 14 13 17 17 C 1.40740 * 119.89492 * 359.73906 * 16 15 14 18 18 C 1.41406 * 120.21057 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99838 * 27.65767 * 18 17 16 20 20 C 1.39931 * 119.99902 * 207.64803 * 18 17 16 21 21 N 1.30828 * 120.00091 * 14.38543 * 20 18 17 22 22 Si 1.86800 * 119.99901 * 194.38377 * 20 18 17 23 23 H 1.48501 * 109.47140 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47011 * 120.00098 * 22 20 18 25 25 H 1.48495 * 109.47353 * 240.00065 * 22 20 18 26 26 C 1.38264 * 119.94922 * 144.60882 * 13 12 10 27 27 C 1.37128 * 125.01477 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47013 * 264.24408 * 1 2 3 29 29 H 1.08994 * 109.47023 * 24.24567 * 1 2 3 30 30 H 1.09003 * 109.47138 * 144.24715 * 1 2 3 31 31 H 1.08000 * 125.06023 * 359.97438 * 3 2 1 32 32 H 1.07998 * 126.55712 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.00648 * 359.97438 * 6 5 4 34 34 H 1.08002 * 119.70533 * 180.02562 * 7 6 5 35 35 H 1.08000 * 119.75742 * 180.25767 * 8 7 6 36 36 H 0.96993 * 120.00450 * 4.13833 * 12 10 9 37 37 H 1.08006 * 119.78659 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.83752 * 180.23616 * 15 14 13 39 39 H 1.08006 * 120.05346 * 179.76337 * 16 15 14 40 40 H 0.97002 * 119.99756 * 179.97438 * 21 20 18 41 41 H 1.07997 * 120.15886 * 359.95377 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2505 1.1211 0.0000 4 6 3.5461 0.7706 0.0006 5 6 3.5909 -0.6944 0.0016 6 6 4.6248 -1.6321 0.0029 7 6 4.3333 -2.9796 0.0031 8 6 3.0202 -3.4160 0.0074 9 6 1.9707 -2.4997 0.0007 10 6 0.5735 -2.9718 0.0000 11 8 -0.2472 -2.4432 0.7251 12 7 0.2076 -3.9926 -0.8002 13 6 -1.1336 -4.3838 -0.8656 14 6 -1.9298 -4.3314 0.2765 15 6 -3.2603 -4.7117 0.2219 16 6 -3.8082 -5.1562 -0.9604 17 6 -3.0148 -5.2196 -2.1211 18 6 -3.5708 -5.6745 -3.3391 19 1 -4.6270 -5.5534 -3.5291 20 6 -2.7525 -6.2815 -4.2983 21 7 -1.5508 -6.6837 -3.9729 22 14 -3.3758 -6.5175 -6.0433 23 1 -4.7559 -5.9803 -6.1529 24 1 -2.4873 -5.7944 -6.9884 25 1 -3.3795 -7.9646 -6.3762 26 6 -1.6658 -4.8273 -2.0621 27 6 2.2519 -1.1231 0.0005 28 1 -0.3633 -0.1031 1.0225 29 1 -0.3633 0.9370 -0.4220 30 1 -0.3633 -0.8340 -0.6005 31 1 1.8825 2.1365 -0.0004 32 1 4.3936 1.4400 0.0011 33 1 5.6531 -1.3021 0.0030 34 1 5.1369 -3.7011 0.0046 35 1 2.8073 -4.4748 0.0117 36 1 0.8743 -4.4560 -1.3308 37 1 -1.5078 -3.9880 1.2095 38 1 -3.8698 -4.6638 1.1122 39 1 -4.8453 -5.4554 -0.9972 40 1 -0.9837 -7.1048 -4.6377 41 1 -1.0484 -4.8718 -2.9471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199017976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:22 Heat of formation + Delta-G solvation = 52.413125 kcal Electronic energy + Delta-G solvation = -25703.155936 eV Core-core repulsion = 22127.247455 eV Total energy + Delta-G solvation = -3575.908481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47671 -39.52927 -37.31059 -36.84789 -34.29514 -33.32058 -32.72894 -30.64778 -29.55511 -29.09819 -28.20432 -26.21524 -25.26167 -23.74932 -21.70290 -21.68034 -21.20997 -20.21841 -19.41534 -17.56866 -17.39209 -16.71082 -16.16480 -15.76119 -15.36006 -15.04751 -14.90916 -14.81654 -14.52615 -14.01827 -13.65885 -13.25869 -13.01051 -12.84372 -12.75051 -12.66082 -12.38831 -12.11350 -11.75054 -11.67324 -11.37760 -11.30027 -11.16742 -11.13665 -10.74467 -10.66071 -10.06240 -9.75603 -9.65165 -9.45998 -9.21134 -8.92996 -8.24476 -7.68061 -7.39081 -7.04908 -6.70813 -4.40430 0.81380 1.60339 2.44910 2.72123 2.84154 2.86920 3.06322 3.11499 3.16819 3.29916 3.64867 3.91719 3.92533 4.62062 4.62696 4.71662 4.88402 4.98195 5.02615 5.35518 5.36450 5.49905 5.54933 5.62840 5.73591 5.83768 5.89420 5.93122 6.24092 6.30227 6.47614 6.62954 6.64722 6.65140 6.74529 6.86354 7.02246 7.03834 7.16929 7.22254 7.26048 7.56686 7.65924 7.90279 8.00090 8.11500 8.29003 8.51327 8.70551 8.86500 8.92260 10.19290 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.003399 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.480207 B = 8236.761435 C = 8737.249624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.474 5.474 3 C 0.050 3.950 4 C -0.208 4.208 5 C -0.118 4.118 6 C -0.053 4.053 7 C -0.155 4.155 8 C -0.067 4.067 9 C -0.135 4.135 10 C 0.550 3.450 11 O -0.526 6.526 12 N -0.654 5.654 13 C 0.139 3.861 14 C -0.223 4.223 15 C -0.089 4.089 16 C -0.224 4.224 17 C 0.120 3.880 18 C -0.465 4.465 19 H 0.078 0.922 20 C 0.076 3.924 21 N -0.802 5.802 22 Si 0.907 3.093 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.275 1.275 26 C -0.176 4.176 27 C 0.141 3.859 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.404 0.596 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.278 0.722 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.599 10.045 4.076 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.155 5.155 3 C -0.075 4.075 4 C -0.233 4.233 5 C -0.123 4.123 6 C -0.072 4.072 7 C -0.174 4.174 8 C -0.087 4.087 9 C -0.140 4.140 10 C 0.338 3.662 11 O -0.404 6.404 12 N -0.297 5.297 13 C 0.047 3.953 14 C -0.244 4.244 15 C -0.108 4.108 16 C -0.244 4.244 17 C 0.117 3.883 18 C -0.495 4.495 19 H 0.096 0.904 20 C -0.140 4.140 21 N -0.429 5.429 22 Si 0.732 3.268 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.197 4.197 27 C 0.031 3.969 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.186 0.814 32 H 0.165 0.835 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.239 0.761 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.846 10.358 4.480 15.652 hybrid contribution 0.084 -0.465 -1.089 1.187 sum 10.930 9.893 3.391 15.127 Atomic orbital electron populations 1.22236 0.75710 1.03450 1.04594 1.43878 1.06803 1.03976 1.60800 1.21889 0.90530 0.91226 1.03855 1.21623 0.95937 0.92524 1.13202 1.19172 0.91667 0.93755 1.07714 1.20623 0.97822 0.91923 0.96784 1.20768 0.96084 0.95416 1.05147 1.21039 0.91704 0.98672 0.97313 1.18931 0.93654 0.90501 1.10962 1.18219 0.87399 0.79898 0.80660 1.90767 1.52648 1.57079 1.39861 1.43438 1.09191 1.32878 1.44163 1.17647 0.82011 1.00722 0.94889 1.20456 0.94704 1.12375 0.96858 1.20451 0.94426 0.99287 0.96646 1.21090 0.99559 1.10666 0.93085 1.17361 0.90823 0.88058 0.92055 1.19555 0.96062 1.34357 0.99554 0.90370 1.25855 0.94423 0.93222 1.00539 1.69803 1.08581 1.29250 1.35239 0.86277 0.80187 0.78548 0.81793 1.18470 1.19830 1.20015 1.21087 0.97350 1.06513 0.94779 1.17921 0.90186 0.87015 1.01771 0.90082 0.90832 0.89332 0.81434 0.83481 0.85789 0.85448 0.85121 0.76125 0.87498 0.89032 0.88839 0.91095 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 9.25 59.85 0.55 1.69 16 2 N -0.47 -6.81 3.16 -121.55 -0.38 -7.19 16 3 C 0.05 0.57 11.27 -16.71 -0.19 0.39 16 4 C -0.21 -2.37 11.09 -37.64 -0.42 -2.79 16 5 C -0.12 -1.61 6.37 -105.15 -0.67 -2.28 16 6 C -0.05 -0.61 10.09 -39.22 -0.40 -1.00 16 7 C -0.15 -1.75 10.00 -39.67 -0.40 -2.15 16 8 C -0.07 -0.89 9.35 -39.13 -0.37 -1.26 16 9 C -0.13 -2.16 5.74 -104.88 -0.60 -2.76 16 10 C 0.55 10.28 6.15 -12.50 -0.08 10.20 16 11 O -0.53 -10.94 10.84 5.27 0.06 -10.89 16 12 N -0.65 -12.62 5.28 -10.86 -0.06 -12.68 16 13 C 0.14 3.22 6.28 -83.78 -0.53 2.69 16 14 C -0.22 -5.23 8.70 -39.09 -0.34 -5.57 16 15 C -0.09 -2.06 10.02 -39.69 -0.40 -2.46 16 16 C -0.22 -5.51 9.79 -38.84 -0.38 -5.89 16 17 C 0.12 3.16 5.55 -106.85 -0.59 2.56 16 18 C -0.47 -12.17 9.05 -37.74 -0.34 -12.51 16 19 H 0.08 1.98 7.89 -52.49 -0.41 1.57 16 20 C 0.08 1.87 5.19 -17.35 -0.09 1.78 16 21 N -0.80 -20.14 10.97 55.55 0.61 -19.53 16 22 Si 0.91 18.46 29.58 -169.99 -5.03 13.43 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 C -0.18 -4.43 8.58 -38.68 -0.33 -4.77 16 27 C 0.14 2.20 6.72 -83.76 -0.56 1.64 16 28 H 0.08 1.20 7.61 -51.93 -0.40 0.80 16 29 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.09 1.51 5.90 -51.93 -0.31 1.20 16 31 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.13 1.52 7.95 -52.49 -0.42 1.11 16 36 H 0.40 6.83 8.36 -40.82 -0.34 6.49 16 37 H 0.11 2.49 6.25 -52.48 -0.33 2.17 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 40 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 41 H 0.12 3.12 6.27 -52.49 -0.33 2.79 16 LS Contribution 345.30 15.07 5.20 5.20 Total: -1.00 -30.18 345.30 -10.35 -40.53 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -4.62 Total: 13.60 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -6.12 Total: -22.48 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.17 Total: -39.40 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.06 Total: -10.89 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.18 -10.35 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199017976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.944 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds