Wall clock time and date at job start Tue Mar 31 2020 12:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36891 * 125.01676 * 2 1 4 4 C 1.34219 * 109.87673 * 179.97438 * 3 2 1 5 5 C 1.46567 * 106.88908 * 359.97438 * 4 3 2 6 6 C 1.39579 * 133.95267 * 180.02562 * 5 4 3 7 7 C 1.37869 * 119.99430 * 180.02562 * 6 5 4 8 8 C 1.38364 * 120.59378 * 359.73934 * 7 6 5 9 9 C 1.39328 * 120.49130 * 0.51918 * 8 7 6 10 10 C 1.47477 * 120.20727 * 179.76326 * 9 8 7 11 11 O 1.21605 * 119.99784 * 136.16276 * 10 9 8 12 12 N 1.34773 * 119.99809 * 316.43434 * 10 9 8 13 13 C 1.39864 * 119.99779 * 184.13565 * 12 10 9 14 14 C 1.39314 * 119.94850 * 324.33134 * 13 12 10 15 15 C 1.38484 * 120.42648 * 179.76145 * 14 13 12 16 16 C 1.37685 * 120.31931 * 0.51797 * 15 14 13 17 17 C 1.40740 * 119.89492 * 359.73906 * 16 15 14 18 18 C 1.41406 * 120.21057 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99838 * 27.65767 * 18 17 16 20 20 C 1.39931 * 119.99902 * 207.64803 * 18 17 16 21 21 N 1.30828 * 120.00091 * 14.38543 * 20 18 17 22 22 Si 1.86800 * 119.99901 * 194.38377 * 20 18 17 23 23 H 1.48501 * 109.47140 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47011 * 120.00098 * 22 20 18 25 25 H 1.48495 * 109.47353 * 240.00065 * 22 20 18 26 26 C 1.38264 * 119.94922 * 144.60882 * 13 12 10 27 27 C 1.37128 * 125.01477 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47013 * 264.24408 * 1 2 3 29 29 H 1.08994 * 109.47023 * 24.24567 * 1 2 3 30 30 H 1.09003 * 109.47138 * 144.24715 * 1 2 3 31 31 H 1.08000 * 125.06023 * 359.97438 * 3 2 1 32 32 H 1.07998 * 126.55712 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.00648 * 359.97438 * 6 5 4 34 34 H 1.08002 * 119.70533 * 180.02562 * 7 6 5 35 35 H 1.08000 * 119.75742 * 180.25767 * 8 7 6 36 36 H 0.96993 * 120.00450 * 4.13833 * 12 10 9 37 37 H 1.08006 * 119.78659 * 0.02562 * 14 13 12 38 38 H 1.07996 * 119.83752 * 180.23616 * 15 14 13 39 39 H 1.08006 * 120.05346 * 179.76337 * 16 15 14 40 40 H 0.97002 * 119.99756 * 179.97438 * 21 20 18 41 41 H 1.07997 * 120.15886 * 359.95377 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2505 1.1211 0.0000 4 6 3.5461 0.7706 0.0006 5 6 3.5909 -0.6944 0.0016 6 6 4.6248 -1.6321 0.0029 7 6 4.3333 -2.9796 0.0031 8 6 3.0202 -3.4160 0.0074 9 6 1.9707 -2.4997 0.0007 10 6 0.5735 -2.9718 0.0000 11 8 -0.2472 -2.4432 0.7251 12 7 0.2076 -3.9926 -0.8002 13 6 -1.1336 -4.3838 -0.8656 14 6 -1.9298 -4.3314 0.2765 15 6 -3.2603 -4.7117 0.2219 16 6 -3.8082 -5.1562 -0.9604 17 6 -3.0148 -5.2196 -2.1211 18 6 -3.5708 -5.6745 -3.3391 19 1 -4.6270 -5.5534 -3.5291 20 6 -2.7525 -6.2815 -4.2983 21 7 -1.5508 -6.6837 -3.9729 22 14 -3.3758 -6.5175 -6.0433 23 1 -4.7559 -5.9803 -6.1529 24 1 -2.4873 -5.7944 -6.9884 25 1 -3.3795 -7.9646 -6.3762 26 6 -1.6658 -4.8273 -2.0621 27 6 2.2519 -1.1231 0.0005 28 1 -0.3633 -0.1031 1.0225 29 1 -0.3633 0.9370 -0.4220 30 1 -0.3633 -0.8340 -0.6005 31 1 1.8825 2.1365 -0.0004 32 1 4.3936 1.4400 0.0011 33 1 5.6531 -1.3021 0.0030 34 1 5.1369 -3.7011 0.0046 35 1 2.8073 -4.4748 0.0117 36 1 0.8743 -4.4560 -1.3308 37 1 -1.5078 -3.9880 1.2095 38 1 -3.8698 -4.6638 1.1122 39 1 -4.8453 -5.4554 -0.9972 40 1 -0.9837 -7.1048 -4.6377 41 1 -1.0484 -4.8718 -2.9471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199017976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:21 Heat of formation + Delta-G solvation = 37.228571 kcal Electronic energy + Delta-G solvation = -25703.814387 eV Core-core repulsion = 22127.247455 eV Total energy + Delta-G solvation = -3576.566932 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.51027 -41.03948 -39.01284 -37.92480 -36.02026 -35.10958 -33.78208 -31.81370 -31.42843 -30.25600 -29.68175 -27.33556 -27.13463 -24.97586 -23.17182 -22.90833 -22.67645 -21.65797 -20.77193 -19.27647 -18.79070 -17.79227 -17.51520 -17.20457 -16.66057 -16.60502 -16.44614 -16.08801 -15.89998 -15.36548 -15.07329 -14.60937 -14.58940 -14.19535 -14.00632 -13.83111 -13.64643 -13.52702 -13.24222 -13.02405 -12.82936 -12.73286 -12.65408 -12.35093 -12.25387 -12.21796 -11.84237 -11.59607 -11.19079 -10.97071 -10.66823 -10.59974 -9.33399 -9.22509 -8.92169 -8.64700 -8.53311 -6.38180 -0.22488 0.60978 0.83173 1.01460 1.39405 1.46692 1.53630 1.59560 1.86510 1.91100 2.21550 2.21842 2.74220 2.87574 3.55419 3.67275 3.81938 3.84751 3.97639 4.07506 4.35158 4.40838 4.42643 4.47494 4.62302 4.70003 4.73643 4.82617 4.84747 4.95228 5.02281 5.08304 5.12594 5.18083 5.32893 5.36195 5.53064 5.73622 5.74916 5.82863 5.84898 6.00672 6.06592 6.16792 6.30048 6.34570 6.52704 6.68247 6.92563 6.94800 7.16174 8.35235 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.003399 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.480207 B = 8236.761435 C = 8737.249624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.488 5.488 3 C 0.044 3.956 4 C -0.205 4.205 5 C -0.136 4.136 6 C -0.043 4.043 7 C -0.154 4.154 8 C -0.067 4.067 9 C -0.167 4.167 10 C 0.553 3.447 11 O -0.552 6.552 12 N -0.653 5.653 13 C 0.147 3.853 14 C -0.234 4.234 15 C -0.086 4.086 16 C -0.243 4.243 17 C 0.094 3.906 18 C -0.499 4.499 19 H 0.076 0.924 20 C 0.037 3.963 21 N -0.826 5.826 22 Si 0.981 3.019 23 H -0.260 1.260 24 H -0.265 1.265 25 H -0.265 1.265 26 C -0.196 4.196 27 C 0.107 3.893 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.204 0.796 32 H 0.180 0.820 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.140 0.860 36 H 0.413 0.587 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.288 0.712 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.880 11.103 3.580 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.170 5.170 3 C -0.080 4.080 4 C -0.229 4.229 5 C -0.140 4.140 6 C -0.061 4.061 7 C -0.173 4.173 8 C -0.086 4.086 9 C -0.173 4.173 10 C 0.343 3.657 11 O -0.432 6.432 12 N -0.297 5.297 13 C 0.054 3.946 14 C -0.255 4.255 15 C -0.104 4.104 16 C -0.263 4.263 17 C 0.091 3.909 18 C -0.529 4.529 19 H 0.094 0.906 20 C -0.177 4.177 21 N -0.453 5.453 22 Si 0.802 3.198 23 H -0.184 1.184 24 H -0.190 1.190 25 H -0.190 1.190 26 C -0.218 4.218 27 C -0.003 4.003 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.070 0.930 31 H 0.221 0.779 32 H 0.198 0.802 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.158 0.842 36 H 0.250 0.750 37 H 0.125 0.875 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.166 11.426 4.000 17.886 hybrid contribution -0.495 -0.745 -0.849 1.233 sum 12.671 10.681 3.151 16.869 Atomic orbital electron populations 1.22031 0.76411 1.03566 1.03144 1.44062 1.06707 1.04726 1.61494 1.22578 0.90497 0.91890 1.03040 1.22065 0.96942 0.91808 1.12088 1.19659 0.91136 0.95362 1.07889 1.21114 0.99100 0.91620 0.94246 1.21163 0.95849 0.96334 1.03951 1.21301 0.92202 0.98808 0.96321 1.18834 0.92193 0.91577 1.14681 1.18719 0.88619 0.78880 0.79468 1.90731 1.53947 1.57631 1.40854 1.43406 1.07954 1.33531 1.44772 1.17695 0.83630 0.99137 0.94122 1.20597 0.95171 1.12786 0.96917 1.20751 0.94565 0.97875 0.97231 1.21261 1.00064 1.11697 0.93274 1.17743 0.91672 0.88541 0.92961 1.19804 0.96440 1.35965 1.00716 0.90575 1.26682 0.94455 0.92286 1.04297 1.69846 1.09509 1.29047 1.36865 0.85170 0.79525 0.78828 0.76257 1.18379 1.18994 1.18998 1.20997 0.97288 1.08380 0.95108 1.18310 0.91775 0.87199 1.02995 0.91549 0.87545 0.93003 0.77894 0.80239 0.82200 0.82028 0.84202 0.75004 0.87501 0.86203 0.87939 0.90160 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.61 9.25 127.77 1.18 3.80 16 2 N -0.49 -13.89 3.16 -538.48 -1.70 -15.59 16 3 C 0.04 0.90 11.27 82.99 0.94 1.83 16 4 C -0.21 -4.07 11.09 23.53 0.26 -3.81 16 5 C -0.14 -3.40 6.37 -20.21 -0.13 -3.53 16 6 C -0.04 -0.84 10.09 22.51 0.23 -0.61 16 7 C -0.15 -3.06 10.00 22.21 0.22 -2.84 16 8 C -0.07 -1.72 9.35 22.56 0.21 -1.51 16 9 C -0.17 -5.44 5.74 -20.03 -0.12 -5.56 16 10 C 0.55 21.57 6.15 86.68 0.53 22.10 16 11 O -0.55 -24.17 10.84 -4.05 -0.04 -24.21 16 12 N -0.65 -26.32 5.28 -306.54 -1.62 -27.94 16 13 C 0.15 7.10 6.28 38.12 0.24 7.34 16 14 C -0.23 -11.30 8.70 22.59 0.20 -11.10 16 15 C -0.09 -4.02 10.02 22.20 0.22 -3.80 16 16 C -0.24 -12.31 9.79 22.75 0.22 -12.09 16 17 C 0.09 5.12 5.55 -21.31 -0.12 5.01 16 18 C -0.50 -26.96 9.05 23.46 0.21 -26.75 16 19 H 0.08 3.98 7.89 -2.91 -0.02 3.96 16 20 C 0.04 1.86 5.19 85.25 0.44 2.30 16 21 N -0.83 -42.21 10.97 21.82 0.24 -41.97 16 22 Si 0.98 37.92 29.58 68.60 2.03 39.95 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 24 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 25 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 26 C -0.20 -10.34 8.58 22.86 0.20 -10.14 16 27 C 0.11 3.32 6.72 39.44 0.26 3.59 16 28 H 0.07 2.07 7.61 -2.39 -0.02 2.05 16 29 H 0.11 2.25 8.11 -2.39 -0.02 2.23 16 30 H 0.05 1.88 5.90 -2.39 -0.01 1.86 16 31 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.14 3.18 7.95 -2.91 -0.02 3.16 16 36 H 0.41 14.62 8.36 -92.71 -0.77 13.85 16 37 H 0.11 5.14 6.25 -2.91 -0.02 5.12 16 38 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 40 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 41 H 0.11 5.92 6.27 -2.91 -0.02 5.90 16 Total: -1.00 -68.55 345.30 4.41 -64.14 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: 0.30 Total: 41.40 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 5.21 Total: -35.76 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -3.08 Total: -85.51 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.04 Total: -24.21 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -68.55 4.41 -64.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199017976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.368 kcal (2) G-P(sol) polarization free energy of solvation -68.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds