Wall clock time and date at job start Tue Mar 31 2020 13:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35841 * 116.99929 * 2 1 4 4 C 1.39804 * 119.61662 * 0.02562 * 3 2 1 5 5 C 1.36092 * 120.75768 * 180.02562 * 4 3 2 6 6 C 1.40227 * 119.85245 * 0.24541 * 5 4 3 7 7 C 1.41590 * 119.88075 * 359.50192 * 6 5 4 8 8 C 1.37630 * 119.61854 * 180.02562 * 3 2 1 9 9 N 1.33825 * 119.97281 * 180.25565 * 7 6 5 10 10 C 1.31324 * 121.67229 * 0.24644 * 9 7 6 11 11 C 1.38735 * 121.84268 * 359.97438 * 10 9 7 12 12 C 1.38684 * 119.70812 * 0.02562 * 11 10 9 13 13 N 1.38708 * 121.04086 * 180.02562 * 12 11 10 14 14 C 1.39744 * 120.00053 * 352.62490 * 13 12 11 15 15 C 1.39346 * 119.95232 * 318.87309 * 14 13 12 16 16 C 1.38475 * 120.42264 * 179.75768 * 15 14 13 17 17 C 1.37689 * 120.32441 * 0.51295 * 16 15 14 18 18 C 1.40746 * 119.89768 * 359.74508 * 17 16 15 19 19 C 1.41413 * 120.21238 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99521 * 33.54288 * 19 18 17 21 21 C 1.39921 * 120.00428 * 213.54870 * 19 18 17 22 22 N 1.30840 * 119.99742 * 358.42706 * 21 19 18 23 23 Si 1.86795 * 120.00395 * 178.43251 * 21 19 18 24 24 H 1.48502 * 109.47286 * 89.99627 * 23 21 19 25 25 H 1.48498 * 109.47515 * 209.99939 * 23 21 19 26 26 H 1.48502 * 109.46943 * 329.99950 * 23 21 19 27 27 C 1.38290 * 119.95236 * 139.14000 * 14 13 12 28 28 H 1.09001 * 109.46927 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46835 * 299.99544 * 1 2 3 30 30 H 1.08997 * 109.46956 * 59.99922 * 1 2 3 31 31 H 1.07997 * 119.62609 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.07281 * 179.97438 * 5 4 3 33 33 H 1.08008 * 120.19126 * 359.95112 * 8 3 2 34 34 H 1.08000 * 119.08139 * 179.97438 * 10 9 7 35 35 H 1.08004 * 120.14344 * 179.97438 * 11 10 9 36 36 H 0.97001 * 120.00285 * 172.63316 * 13 12 11 37 37 H 1.07996 * 119.78791 * 0.02562 * 15 14 13 38 38 H 1.08004 * 119.83573 * 180.23759 * 16 15 14 39 39 H 1.08005 * 120.05096 * 179.76682 * 17 16 15 40 40 H 0.97000 * 119.99939 * 180.02562 * 22 21 19 41 41 H 1.08001 * 120.16290 * 359.96626 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2764 2.3777 0.0005 5 6 1.8700 3.6024 0.0000 6 6 3.2688 3.7001 -0.0063 7 6 4.0581 2.5245 -0.0014 8 6 3.4206 1.2733 -0.0005 9 7 5.3932 2.6156 -0.0022 10 6 6.0051 3.7776 -0.0027 11 6 5.3032 4.9744 -0.0028 12 6 3.9165 4.9579 -0.0020 13 7 3.1872 6.1378 -0.0027 14 6 3.8408 7.3633 0.1511 15 6 4.8777 7.4879 1.0736 16 6 5.5354 8.6963 1.2304 17 6 5.1645 9.7917 0.4832 18 6 4.1154 9.6827 -0.4487 19 6 3.7293 10.8033 -1.2200 20 1 4.4695 11.5258 -1.5307 21 6 2.3884 10.9761 -1.5805 22 7 1.4968 10.0850 -1.2303 23 14 1.8713 12.4790 -2.5620 24 1 1.9646 12.1786 -4.0133 25 1 0.4713 12.8363 -2.2194 26 1 2.7671 13.6169 -2.2335 27 6 3.4540 8.4523 -0.6085 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.1988 2.3069 0.0005 32 1 1.2650 4.4970 0.0000 33 1 4.0058 0.3655 -0.0002 34 1 7.0848 3.8024 -0.0029 35 1 5.8346 5.9147 -0.0028 36 1 2.2234 6.1122 -0.1098 37 1 5.1732 6.6353 1.6670 38 1 6.3403 8.7812 1.9455 39 1 5.6780 10.7332 0.6118 40 1 0.5673 10.2046 -1.4805 41 1 2.6479 8.3580 -1.3211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203528521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:38 Heat of formation + Delta-G solvation = 27.684764 kcal Electronic energy + Delta-G solvation = -25169.629685 eV Core-core repulsion = 21592.648902 eV Total energy + Delta-G solvation = -3576.980783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04657 -40.50592 -39.61587 -37.26130 -36.90940 -35.30430 -33.00796 -31.61953 -31.24238 -30.75436 -29.31016 -28.05543 -27.18625 -25.07911 -24.18016 -23.22630 -22.78810 -21.73123 -19.94863 -19.38060 -18.73113 -18.08239 -17.77156 -17.18140 -16.71123 -16.57543 -16.44143 -16.00585 -15.63361 -15.35570 -15.09254 -14.90331 -14.66669 -14.53372 -14.26220 -14.15612 -13.58863 -13.31552 -13.21951 -12.95302 -12.84971 -12.80915 -12.56437 -12.34047 -12.13941 -12.04165 -11.76719 -11.66861 -11.52264 -11.09446 -10.40944 -10.27683 -9.55314 -9.24246 -9.09903 -8.58791 -8.16998 -6.42467 -0.49078 -0.08870 0.78541 1.01959 1.24369 1.39406 1.48294 1.53692 1.97860 2.21701 2.22523 2.24603 2.76148 3.17598 3.52675 3.61456 3.64815 3.74524 3.93643 4.01232 4.11906 4.35407 4.41488 4.42256 4.49345 4.61910 4.70243 4.74541 4.85576 4.91589 4.93743 4.98591 5.13354 5.16683 5.19552 5.24119 5.34118 5.39639 5.46544 5.72571 5.84645 5.95989 6.05771 6.13532 6.35008 6.43011 6.58737 6.74207 6.95203 6.98659 7.13407 8.38698 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.003141 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.828852 B = 8912.312317 C =10295.400473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.157 3.843 4 C -0.202 4.202 5 C -0.047 4.047 6 C -0.193 4.193 7 C 0.184 3.816 8 C -0.176 4.176 9 N -0.552 5.552 10 C 0.182 3.818 11 C -0.294 4.294 12 C 0.269 3.731 13 N -0.653 5.653 14 C 0.152 3.848 15 C -0.240 4.240 16 C -0.080 4.080 17 C -0.236 4.236 18 C 0.089 3.911 19 C -0.497 4.497 20 H 0.075 0.925 21 C 0.031 3.969 22 N -0.838 5.838 23 Si 0.984 3.016 24 H -0.265 1.265 25 H -0.270 1.270 26 H -0.261 1.261 27 C -0.190 4.190 28 H 0.123 0.877 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.164 0.836 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.185 0.815 35 H 0.143 0.857 36 H 0.410 0.590 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.284 0.716 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 -13.645 1.831 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.109 3.891 4 C -0.221 4.221 5 C -0.066 4.066 6 C -0.199 4.199 7 C 0.062 3.938 8 C -0.196 4.196 9 N -0.266 5.266 10 C 0.015 3.985 11 C -0.320 4.320 12 C 0.155 3.845 13 N -0.272 5.272 14 C 0.058 3.942 15 C -0.261 4.261 16 C -0.099 4.099 17 C -0.256 4.256 18 C 0.086 3.914 19 C -0.528 4.528 20 H 0.093 0.907 21 C -0.182 4.182 22 N -0.466 5.466 23 Si 0.805 3.195 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.184 1.184 27 C -0.212 4.212 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.181 0.819 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.202 0.798 35 H 0.161 0.839 36 H 0.248 0.752 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.436 -14.588 1.834 15.099 hybrid contribution -1.350 1.824 -0.450 2.313 sum -4.786 -12.765 1.384 13.702 Atomic orbital electron populations 1.23445 0.75987 1.05955 1.02601 1.86067 1.23843 1.26096 1.88058 1.18903 0.91620 0.84914 0.93644 1.21188 1.01709 0.90975 1.08198 1.20801 0.92303 0.98781 0.94758 1.18569 0.95556 0.92131 1.13601 1.18469 0.89534 0.91587 0.94186 1.20002 0.91810 0.96622 1.11156 1.68103 1.08746 1.28534 1.21212 1.22989 1.01337 0.85942 0.88263 1.21986 0.92599 1.01537 1.15882 1.18230 0.92206 0.85168 0.88882 1.42038 1.09236 1.01835 1.74078 1.17649 0.95851 0.84329 0.96358 1.20611 1.02955 0.98717 1.03860 1.20764 0.98726 0.92023 0.98372 1.21350 1.04095 0.98536 1.01570 1.17811 0.90788 0.92147 0.90663 1.19788 0.94370 1.07693 1.30945 0.90675 1.26666 0.96188 1.00442 0.94864 1.69806 1.03610 1.34825 1.38358 0.85160 0.78035 0.77786 0.78475 1.18970 1.19472 1.18439 1.21305 1.05420 0.92060 1.02412 0.85933 0.91357 0.91416 0.81862 0.84246 0.84165 0.79848 0.83893 0.75203 0.86606 0.85322 0.87898 0.90584 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.80 113.37 1.11 1.27 16 2 O -0.33 -6.92 10.48 -91.76 -0.96 -7.88 16 3 C 0.16 3.89 6.67 22.51 0.15 4.04 16 4 C -0.20 -4.47 8.94 22.15 0.20 -4.27 16 5 C -0.05 -1.24 9.50 22.25 0.21 -1.03 16 6 C -0.19 -6.19 5.76 -21.17 -0.12 -6.31 16 7 C 0.18 6.05 6.60 40.20 0.27 6.31 16 8 C -0.18 -5.11 9.95 22.66 0.23 -4.89 16 9 N -0.55 -18.28 10.33 -189.06 -1.95 -20.23 16 10 C 0.18 5.50 11.13 84.89 0.94 6.44 16 11 C -0.29 -9.87 8.07 22.50 0.18 -9.69 16 12 C 0.27 9.35 6.46 38.96 0.25 9.60 16 13 N -0.65 -23.91 5.38 -179.61 -0.97 -24.88 16 14 C 0.15 6.51 5.90 38.16 0.23 6.73 16 15 C -0.24 -9.68 7.40 22.59 0.17 -9.51 16 16 C -0.08 -3.23 10.01 22.20 0.22 -3.01 16 17 C -0.24 -10.83 9.79 22.75 0.22 -10.61 16 18 C 0.09 4.56 5.55 -21.31 -0.12 4.44 16 19 C -0.50 -25.86 9.05 23.46 0.21 -25.65 16 20 H 0.08 3.78 7.85 -2.91 -0.02 3.75 16 21 C 0.03 1.50 5.40 85.25 0.46 1.96 16 22 N -0.84 -42.00 10.62 21.82 0.23 -41.76 16 23 Si 0.98 37.51 29.56 68.60 2.03 39.53 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 25 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 27 C -0.19 -9.40 8.58 22.86 0.20 -9.20 16 28 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.65 7.64 -2.39 -0.02 0.63 16 30 H 0.07 0.65 7.64 -2.39 -0.02 0.64 16 31 H 0.16 2.44 6.23 -2.91 -0.02 2.42 16 32 H 0.14 3.19 6.52 -2.91 -0.02 3.17 16 33 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 35 H 0.14 5.00 5.40 -2.91 -0.02 4.98 16 36 H 0.41 13.68 7.05 -92.71 -0.65 13.02 16 37 H 0.12 4.28 6.57 -2.91 -0.02 4.26 16 38 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 39 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.28 12.95 8.30 -92.71 -0.77 12.18 16 41 H 0.11 5.94 6.14 -2.91 -0.02 5.93 16 Total: -1.00 -61.20 341.96 3.82 -57.38 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: 0.44 Total: 41.20 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 5.01 Total: -43.36 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -2.69 Total: -86.87 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.96 Total: -7.88 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.53 kcal Total: -61.20 3.82 -57.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203528521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.064 kcal (2) G-P(sol) polarization free energy of solvation -61.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds