Wall clock time and date at job start Tue Mar 31 2020 13:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35851 * 117.00465 * 2 1 4 4 C 1.39030 * 120.34320 * 0.02562 * 3 2 1 5 5 N 1.31558 * 120.93447 * 179.97438 * 4 3 2 6 6 C 1.32671 * 121.73781 * 359.97438 * 5 4 3 7 7 C 1.48267 * 119.70521 * 179.97438 * 6 5 4 8 8 N 1.30827 * 126.42171 * 180.02562 * 7 6 5 9 9 O 1.21297 * 110.08095 * 179.74551 * 8 7 6 10 10 C 1.33674 * 110.03901 * 0.39919 * 9 8 7 11 11 C 1.50703 * 126.42819 * 179.86529 * 10 9 8 12 12 N 1.46906 * 109.47109 * 269.69123 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47030 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99961 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00406 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00167 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99519 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46874 * 90.00738 * 18 16 14 20 20 H 1.48504 * 109.47006 * 210.00015 * 18 16 14 21 21 H 1.48493 * 109.47447 * 330.00142 * 18 16 14 22 22 N 1.30959 * 107.14147 * 359.60363 * 10 9 8 23 23 C 1.39815 * 120.59153 * 0.25566 * 6 5 4 24 24 O 1.35806 * 120.49027 * 179.73964 * 23 6 5 25 25 C 1.42894 * 116.99858 * 180.02562 * 24 23 6 26 26 C 1.38927 * 119.02195 * 359.50138 * 23 6 5 27 27 H 1.08998 * 109.47205 * 299.99983 * 1 2 3 28 28 H 1.09000 * 109.46877 * 59.99392 * 1 2 3 29 29 H 1.09001 * 109.47485 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.53517 * 359.94925 * 4 3 2 31 31 H 1.08992 * 109.46894 * 149.68859 * 11 10 9 32 32 H 1.09004 * 109.47113 * 29.69009 * 11 10 9 33 33 H 1.00902 * 111.00068 * 56.04268 * 12 11 10 34 34 H 1.08996 * 109.47424 * 299.99656 * 13 12 11 35 35 H 1.09002 * 109.47411 * 60.00282 * 13 12 11 36 36 H 0.97000 * 119.99828 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47164 * 180.02562 * 25 24 23 38 38 H 1.09002 * 109.47679 * 300.00362 * 25 24 23 39 39 H 1.08998 * 109.47539 * 60.00473 * 25 24 23 40 40 H 1.07997 * 120.79613 * 180.21921 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.2957 2.3810 0.0005 5 7 1.8809 3.5592 0.0010 6 6 3.2019 3.6823 0.0016 7 6 3.8139 5.0328 0.0016 8 7 5.0934 5.3057 0.0016 9 8 5.2631 6.5067 -0.0035 10 6 4.0837 7.1359 0.0014 11 6 3.8649 8.6270 0.0005 12 7 3.7931 9.1122 1.3853 13 6 3.5805 10.5652 1.4235 14 6 3.5118 11.0252 2.8570 15 1 3.6161 10.3098 3.6593 16 6 3.3158 12.3594 3.1443 17 7 3.2563 12.7609 4.3952 18 14 3.1361 13.5969 1.7565 19 1 1.7032 13.7218 1.3872 20 1 3.6494 14.9175 2.2014 21 1 3.9128 13.1354 0.5781 22 7 3.1541 6.2135 0.0014 23 6 4.0220 2.5500 -0.0038 24 8 5.3740 2.6784 -0.0085 25 6 6.1402 1.4723 -0.0144 26 6 3.4336 1.2915 0.0009 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2173 2.3223 0.0001 31 1 2.9319 8.8569 -0.5139 32 1 4.6930 9.1155 -0.5132 33 1 4.6205 8.8544 1.9021 34 1 4.4068 11.0668 0.9199 35 1 2.6456 10.8091 0.9189 36 1 3.1187 13.6996 4.5973 37 1 7.2025 1.7166 -0.0173 38 1 5.9046 0.8878 0.8750 39 1 5.8980 0.8923 -0.9049 40 1 4.0397 0.3977 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211455063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:09 Heat of formation + Delta-G solvation = 51.442867 kcal Electronic energy + Delta-G solvation = -25608.036958 eV Core-core repulsion = 21621.237140 eV Total energy + Delta-G solvation = -3986.799817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.29881 -41.34732 -39.49834 -38.02685 -36.14354 -35.39534 -33.02676 -32.26982 -32.02626 -30.46055 -28.32655 -28.09519 -27.75351 -25.25159 -25.06828 -23.16090 -22.86517 -21.37565 -21.19803 -19.19531 -18.09546 -17.88669 -17.68782 -17.01440 -16.79830 -16.57457 -16.25896 -16.00347 -15.51495 -15.24799 -14.47585 -14.32439 -14.06182 -14.00700 -13.84852 -13.53949 -13.18937 -12.77034 -12.48608 -12.40768 -12.25875 -11.99198 -11.87604 -11.73150 -11.68437 -11.45615 -10.83523 -10.70933 -10.65652 -10.08429 -10.03476 -9.84670 -9.55992 -9.35694 -8.61340 -8.45605 -7.70577 -6.07366 -4.06663 0.38209 0.78692 1.44554 2.44220 2.47069 2.77103 3.02395 3.29099 3.31691 3.36413 3.36584 3.47556 3.78752 4.12796 4.40111 4.40532 4.47955 4.51770 4.65978 4.67219 4.75328 4.79741 4.94960 5.02372 5.04429 5.13945 5.23120 5.26194 5.42268 5.52750 5.69110 5.74213 5.91705 6.20027 6.55447 6.62474 6.77162 6.89786 7.45483 7.50767 7.71850 8.09372 8.35788 8.57657 9.00525 9.52603 11.05729 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.002394 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.173056 B =11692.371762 C =12499.563169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.308 6.308 3 C 0.132 3.868 4 C -0.012 4.012 5 N -0.367 5.367 6 C 0.134 3.866 7 C 0.216 3.784 8 N -0.353 5.353 9 O 0.079 5.921 10 C 0.195 3.805 11 C 0.147 3.853 12 N -0.672 5.672 13 C 0.166 3.834 14 C -0.519 4.519 15 H 0.080 0.920 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.878 3.122 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.266 1.266 22 N -0.440 5.440 23 C 0.155 3.845 24 O -0.280 6.280 25 C 0.020 3.980 26 C -0.208 4.208 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.170 0.830 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.343 0.657 34 H -0.008 1.008 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 -27.505 -12.984 30.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.219 6.219 3 C 0.083 3.917 4 C -0.173 4.173 5 N -0.077 5.077 6 C -0.005 4.005 7 C -0.055 4.055 8 N -0.060 5.060 9 O 0.017 5.983 10 C -0.027 4.027 11 C 0.016 3.984 12 N -0.305 5.305 13 C 0.039 3.961 14 C -0.557 4.557 15 H 0.098 0.902 16 C -0.132 4.132 17 N -0.536 5.536 18 Si 0.705 3.295 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.191 1.191 22 N -0.173 5.173 23 C 0.103 3.897 24 O -0.189 6.189 25 C -0.075 4.075 26 C -0.234 4.234 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.187 0.813 31 H 0.131 0.869 32 H 0.080 0.920 33 H 0.160 0.840 34 H 0.010 0.990 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.500 -27.548 -12.804 30.383 hybrid contribution 0.926 0.206 -0.778 1.227 sum 0.426 -27.343 -13.583 30.533 Atomic orbital electron populations 1.23236 0.77171 1.04746 1.02267 1.86058 1.22343 1.25802 1.87654 1.19971 0.92159 0.85876 0.93741 1.22886 1.00926 0.86072 1.07432 1.67421 1.08507 1.26231 1.05577 1.17024 0.87813 0.86399 1.09261 1.23001 0.86005 0.93156 1.03308 1.75033 1.17893 0.93236 1.19813 1.85308 1.34592 1.13022 1.65424 1.29006 0.79083 0.99531 0.95064 1.20493 1.03391 0.79546 0.94979 1.60541 1.44664 1.17560 1.07716 1.20069 0.95566 0.81588 0.98855 1.20985 1.50053 0.93926 0.90741 0.90160 1.24893 0.94688 0.98187 0.95479 1.69893 1.49802 1.16281 1.17658 0.86817 0.78910 0.80941 0.82806 1.20032 1.21192 1.19099 1.72138 1.29933 0.96864 1.18347 1.19620 0.84477 0.92409 0.93179 1.86365 1.12870 1.33062 1.86622 1.23239 0.96483 0.86180 1.01568 1.20797 0.93030 0.97321 1.12264 0.91770 0.91869 0.87575 0.81298 0.86869 0.91970 0.83956 0.99008 0.95269 0.92541 0.87404 0.92169 0.92250 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.43 10.50 -19.27 -0.20 -2.63 16 3 C 0.13 1.28 6.71 -39.00 -0.26 1.02 16 4 C -0.01 -0.13 10.21 -17.38 -0.18 -0.30 16 5 N -0.37 -5.45 10.28 -9.53 -0.10 -5.54 16 6 C 0.13 2.09 6.77 -82.79 -0.56 1.53 16 7 C 0.22 3.80 7.88 -156.10 -1.23 2.57 16 8 N -0.35 -6.04 10.67 30.98 0.33 -5.71 16 9 O 0.08 1.30 11.29 18.02 0.20 1.51 16 10 C 0.19 3.28 8.01 -12.98 -0.10 3.18 16 11 C 0.15 2.36 6.31 -4.97 -0.03 2.33 16 12 N -0.67 -13.58 6.48 -116.34 -0.75 -14.34 16 13 C 0.17 3.85 4.51 -4.98 -0.02 3.83 16 14 C -0.52 -14.61 9.87 -34.44 -0.34 -14.95 16 15 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 18 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 22 N -0.44 -8.17 11.56 -9.88 -0.11 -8.29 16 23 C 0.15 1.96 6.70 -38.74 -0.26 1.70 16 24 O -0.28 -3.37 8.82 -19.13 -0.17 -3.54 16 25 C 0.02 0.14 9.83 101.05 0.99 1.13 16 26 C -0.21 -2.05 9.08 -39.04 -0.35 -2.40 16 27 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 28 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 29 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.17 1.30 6.30 -52.49 -0.33 0.97 16 31 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.34 6.73 8.71 -39.29 -0.34 6.39 16 34 H -0.01 -0.17 7.20 -51.93 -0.37 -0.55 16 35 H 0.03 0.68 7.57 -51.93 -0.39 0.28 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16 39 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 40 H 0.16 1.09 6.44 -52.49 -0.34 0.75 16 LS Contribution 348.83 15.07 5.26 5.26 Total: -1.00 -35.28 348.83 -5.55 -40.83 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.65 Total: 0.13 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.45 Total: 2.61 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.14 Total: -60.50 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.17 Total: -4.66 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.28 -5.55 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211455063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.269 kcal (2) G-P(sol) polarization free energy of solvation -35.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds