Wall clock time and date at job start Tue Mar 31 2020 13:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35851 * 117.00465 * 2 1 4 4 C 1.39030 * 120.34320 * 0.02562 * 3 2 1 5 5 N 1.31558 * 120.93447 * 179.97438 * 4 3 2 6 6 C 1.32671 * 121.73781 * 359.97438 * 5 4 3 7 7 C 1.48267 * 119.70521 * 179.97438 * 6 5 4 8 8 N 1.30827 * 126.42171 * 180.02562 * 7 6 5 9 9 O 1.21297 * 110.08095 * 179.74551 * 8 7 6 10 10 C 1.33674 * 110.03901 * 0.39919 * 9 8 7 11 11 C 1.50703 * 126.42819 * 179.86529 * 10 9 8 12 12 N 1.46906 * 109.47109 * 269.69123 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47030 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99961 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00406 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00167 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99519 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46874 * 90.00738 * 18 16 14 20 20 H 1.48504 * 109.47006 * 210.00015 * 18 16 14 21 21 H 1.48493 * 109.47447 * 330.00142 * 18 16 14 22 22 N 1.30959 * 107.14147 * 359.60363 * 10 9 8 23 23 C 1.39815 * 120.59153 * 0.25566 * 6 5 4 24 24 O 1.35806 * 120.49027 * 179.73964 * 23 6 5 25 25 C 1.42894 * 116.99858 * 180.02562 * 24 23 6 26 26 C 1.38927 * 119.02195 * 359.50138 * 23 6 5 27 27 H 1.08998 * 109.47205 * 299.99983 * 1 2 3 28 28 H 1.09000 * 109.46877 * 59.99392 * 1 2 3 29 29 H 1.09001 * 109.47485 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.53517 * 359.94925 * 4 3 2 31 31 H 1.08992 * 109.46894 * 149.68859 * 11 10 9 32 32 H 1.09004 * 109.47113 * 29.69009 * 11 10 9 33 33 H 1.00902 * 111.00068 * 56.04268 * 12 11 10 34 34 H 1.08996 * 109.47424 * 299.99656 * 13 12 11 35 35 H 1.09002 * 109.47411 * 60.00282 * 13 12 11 36 36 H 0.97000 * 119.99828 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47164 * 180.02562 * 25 24 23 38 38 H 1.09002 * 109.47679 * 300.00362 * 25 24 23 39 39 H 1.08998 * 109.47539 * 60.00473 * 25 24 23 40 40 H 1.07997 * 120.79613 * 180.21921 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.2957 2.3810 0.0005 5 7 1.8809 3.5592 0.0010 6 6 3.2019 3.6823 0.0016 7 6 3.8139 5.0328 0.0016 8 7 5.0934 5.3057 0.0016 9 8 5.2631 6.5067 -0.0035 10 6 4.0837 7.1359 0.0014 11 6 3.8649 8.6270 0.0005 12 7 3.7931 9.1122 1.3853 13 6 3.5805 10.5652 1.4235 14 6 3.5118 11.0252 2.8570 15 1 3.6161 10.3098 3.6593 16 6 3.3158 12.3594 3.1443 17 7 3.2563 12.7609 4.3952 18 14 3.1361 13.5969 1.7565 19 1 1.7032 13.7218 1.3872 20 1 3.6494 14.9175 2.2014 21 1 3.9128 13.1354 0.5781 22 7 3.1541 6.2135 0.0014 23 6 4.0220 2.5500 -0.0038 24 8 5.3740 2.6784 -0.0085 25 6 6.1402 1.4723 -0.0144 26 6 3.4336 1.2915 0.0009 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2173 2.3223 0.0001 31 1 2.9319 8.8569 -0.5139 32 1 4.6930 9.1155 -0.5132 33 1 4.6205 8.8544 1.9021 34 1 4.4068 11.0668 0.9199 35 1 2.6456 10.8091 0.9189 36 1 3.1187 13.6996 4.5973 37 1 7.2025 1.7166 -0.0173 38 1 5.9046 0.8878 0.8750 39 1 5.8980 0.8923 -0.9049 40 1 4.0397 0.3977 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211455063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:09 Heat of formation + Delta-G solvation = 21.414699 kcal Electronic energy + Delta-G solvation = -25609.339077 eV Core-core repulsion = 21621.237140 eV Total energy + Delta-G solvation = -3988.101936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.58171 -42.14981 -40.19553 -38.82477 -37.66291 -36.71120 -34.81580 -33.65168 -33.05460 -31.44514 -30.04166 -28.65769 -28.27331 -26.81746 -26.18776 -24.19456 -23.79641 -23.17060 -22.43030 -19.90668 -19.29726 -19.18922 -18.89838 -18.40786 -17.71300 -17.36348 -17.25680 -17.10660 -16.59847 -16.13185 -15.93096 -15.55024 -15.28077 -15.18091 -14.81027 -14.60715 -14.50785 -14.07962 -13.83512 -13.48668 -13.13284 -13.00975 -12.91403 -12.66604 -12.58445 -12.53974 -12.46378 -12.37385 -12.09271 -11.82075 -11.51912 -11.25765 -10.89666 -10.76857 -10.31056 -9.36019 -9.27728 -8.25837 -6.31722 -0.58124 -0.02708 0.20491 1.25487 1.42763 1.44747 1.55120 1.70077 1.82244 2.12859 2.28320 2.39523 2.53074 2.68859 3.08923 3.36133 3.46479 3.54995 3.72880 3.83746 3.92981 4.07828 4.28517 4.31565 4.32986 4.34874 4.39048 4.48361 4.61742 4.68313 4.76042 4.77657 4.80460 4.91752 4.99441 5.08136 5.52283 5.84098 5.91323 6.05819 6.43105 6.53836 6.62121 6.76139 7.09136 7.32515 8.91133 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.002394 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.173056 B =11692.371762 C =12499.563169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.308 6.308 3 C 0.147 3.853 4 C -0.012 4.012 5 N -0.401 5.401 6 C 0.085 3.915 7 C 0.210 3.790 8 N -0.363 5.363 9 O 0.080 5.920 10 C 0.197 3.803 11 C 0.153 3.847 12 N -0.690 5.690 13 C 0.177 3.823 14 C -0.531 4.531 15 H 0.032 0.968 16 C 0.005 3.995 17 N -0.951 5.951 18 Si 0.956 3.044 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.237 1.237 22 N -0.469 5.469 23 C 0.157 3.843 24 O -0.305 6.305 25 C 0.010 3.990 26 C -0.204 4.204 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.131 0.869 30 H 0.197 0.803 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.342 0.658 34 H 0.010 0.990 35 H 0.038 0.962 36 H 0.267 0.733 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -29.066 -15.348 32.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.219 6.219 3 C 0.097 3.903 4 C -0.176 4.176 5 N -0.111 5.111 6 C -0.052 4.052 7 C -0.060 4.060 8 N -0.070 5.070 9 O 0.019 5.981 10 C -0.024 4.024 11 C 0.022 3.978 12 N -0.323 5.323 13 C 0.049 3.951 14 C -0.570 4.570 15 H 0.050 0.950 16 C -0.193 4.193 17 N -0.591 5.591 18 Si 0.778 3.222 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.160 1.160 22 N -0.202 5.202 23 C 0.105 3.895 24 O -0.216 6.216 25 C -0.084 4.084 26 C -0.230 4.230 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.149 0.851 30 H 0.213 0.787 31 H 0.142 0.858 32 H 0.115 0.885 33 H 0.160 0.840 34 H 0.027 0.973 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.791 -29.137 -15.187 32.867 hybrid contribution 0.955 0.400 0.036 1.036 sum 0.163 -28.737 -15.151 32.487 Atomic orbital electron populations 1.23611 0.75055 1.06762 1.03203 1.86083 1.24464 1.24505 1.86836 1.20005 0.92251 0.86282 0.91765 1.23355 1.02235 0.85530 1.06436 1.67323 1.08709 1.28334 1.06782 1.17129 0.88728 0.86300 1.13090 1.23502 0.86038 0.93996 1.02443 1.74997 1.17959 0.93311 1.20755 1.85280 1.34374 1.12988 1.65470 1.29088 0.79059 0.99657 0.94641 1.20577 1.05426 0.78968 0.92797 1.60348 1.45248 1.16037 1.10653 1.19825 0.96462 0.83313 0.95463 1.21304 1.49725 0.93480 0.92463 0.95001 1.25951 0.94125 1.00686 0.98493 1.70069 1.51492 1.16994 1.20570 0.85597 0.79545 0.77399 0.79663 1.19201 1.21125 1.15970 1.72119 1.30968 0.97757 1.19395 1.19594 0.84748 0.92477 0.92721 1.86326 1.12854 1.35924 1.86471 1.23576 0.96507 0.85098 1.03197 1.21069 0.93512 0.97212 1.11215 0.91016 0.90755 0.85131 0.78651 0.85796 0.88473 0.84020 0.97262 0.94425 0.92381 0.86225 0.90678 0.90355 0.79789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.82 113.37 1.11 1.15 16 2 O -0.31 -3.95 10.50 -91.88 -0.96 -4.92 16 3 C 0.15 2.57 6.71 22.65 0.15 2.72 16 4 C -0.01 -0.26 10.21 84.92 0.87 0.61 16 5 N -0.40 -12.01 10.28 -184.06 -1.89 -13.91 16 6 C 0.08 2.69 6.77 42.07 0.28 2.98 16 7 C 0.21 7.63 7.88 137.22 1.08 8.71 16 8 N -0.36 -12.69 10.67 -59.03 -0.63 -13.32 16 9 O 0.08 2.66 11.29 74.56 0.84 3.50 16 10 C 0.20 6.63 8.01 88.36 0.71 7.34 16 11 C 0.15 4.67 6.31 85.56 0.54 5.21 16 12 N -0.69 -27.62 6.48 -521.98 -3.38 -31.01 16 13 C 0.18 7.98 4.51 85.56 0.39 8.36 16 14 C -0.53 -30.53 9.87 25.60 0.25 -30.28 16 15 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 16 C 0.00 0.27 5.47 84.65 0.46 0.73 16 17 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 18 Si 0.96 42.64 27.47 68.60 1.88 44.52 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 22 N -0.47 -17.78 11.56 -302.44 -3.50 -21.28 16 23 C 0.16 3.91 6.70 22.82 0.15 4.06 16 24 O -0.31 -7.25 8.82 -91.38 -0.81 -8.06 16 25 C 0.01 0.12 9.83 113.37 1.11 1.23 16 26 C -0.20 -3.66 9.08 22.62 0.21 -3.45 16 27 H 0.07 0.31 7.67 -2.39 -0.02 0.30 16 28 H 0.07 0.27 7.67 -2.39 -0.02 0.25 16 29 H 0.13 0.09 8.14 -2.39 -0.02 0.08 16 30 H 0.20 2.64 6.30 -2.91 -0.02 2.62 16 31 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.34 13.61 8.71 -89.69 -0.78 12.83 16 34 H 0.01 0.41 7.20 -2.39 -0.02 0.39 16 35 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 36 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 0.66 7.68 -2.39 -0.02 0.64 16 39 H 0.08 0.63 7.71 -2.39 -0.02 0.61 16 40 H 0.18 2.04 6.44 -2.91 -0.02 2.02 16 Total: -1.00 -80.20 348.83 -0.56 -80.76 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.27 Total: 13.71 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 7.32 Total: 9.38 kcal Atomic # 7 Polarization: -129.79 SS G_CDS: -9.10 Total: -138.89 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.93 Total: -9.48 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.52 kcal Total: -80.20 -0.56 -80.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211455063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.176 kcal (2) G-P(sol) polarization free energy of solvation -80.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds