Wall clock time and date at job start Tue Mar 31 2020 13:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00286 * 2 1 4 4 H 1.48499 * 109.47300 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47071 * 299.99978 * 3 2 1 6 6 H 1.48505 * 109.47115 * 60.00014 * 3 2 1 7 7 C 1.37883 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00403 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46920 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46893 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47676 * 54.99768 * 11 10 9 13 13 N 1.46507 * 109.47309 * 294.99666 * 11 10 9 14 14 C 1.34778 * 119.99899 * 155.00164 * 13 11 10 15 15 O 1.21586 * 120.00134 * 359.97438 * 14 13 11 16 16 N 1.34783 * 119.99531 * 180.02562 * 14 13 11 17 17 C 1.46500 * 119.99679 * 179.97438 * 16 14 13 18 18 C 1.55885 * 110.81975 * 154.99942 * 17 16 14 19 19 S 1.83083 * 82.48198 * 94.34863 * 18 17 16 20 20 C 1.55971 * 110.82157 * 268.60204 * 17 16 14 21 21 C 1.50700 * 109.47284 * 174.99846 * 11 10 9 22 22 C 1.38235 * 120.00275 * 79.72294 * 21 11 10 23 23 C 1.38232 * 120.00257 * 179.81532 * 22 21 11 24 24 C 1.38238 * 119.99674 * 0.39309 * 23 22 21 25 25 C 1.38233 * 119.99967 * 359.86095 * 24 23 22 26 26 C 1.38226 * 120.00158 * 359.95428 * 25 24 23 27 27 H 0.97005 * 119.99987 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.46998 * 60.00176 * 9 7 2 29 29 H 1.09005 * 109.46941 * 299.99791 * 9 7 2 30 30 H 1.09002 * 109.46888 * 59.99741 * 10 9 7 31 31 H 1.08996 * 109.46567 * 299.99537 * 10 9 7 32 32 H 0.96994 * 119.99512 * 335.00450 * 13 11 10 33 33 H 0.96994 * 119.99880 * 0.02562 * 16 14 13 34 34 H 1.08996 * 110.39850 * 31.82605 * 17 16 14 35 35 H 1.09002 * 114.38293 * 340.93647 * 18 17 16 36 36 H 1.09002 * 114.37878 * 207.75921 * 18 17 16 37 37 H 1.09001 * 114.34534 * 152.25527 * 20 17 16 38 38 H 1.09000 * 114.43566 * 19.05497 * 20 17 16 39 39 H 1.08001 * 119.99707 * 0.02562 * 22 21 11 40 40 H 1.07997 * 119.99961 * 180.23083 * 23 22 21 41 41 H 1.08004 * 119.99702 * 179.83240 * 24 23 22 42 42 H 1.08002 * 119.99730 * 179.97438 * 25 24 23 43 43 H 1.08009 * 120.00120 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7877 -5.0073 -0.8415 13 7 0.7309 -5.1178 1.2523 14 6 -0.3707 -5.8928 1.3006 15 8 -0.7429 -6.4831 0.3050 16 7 -1.0602 -6.0126 2.4525 17 6 -2.2580 -6.8546 2.5050 18 6 -2.5208 -7.3542 3.9580 19 16 -3.6070 -5.8814 4.0110 20 6 -3.5366 -6.0200 2.1867 21 6 2.4547 -6.1299 -0.1238 22 6 3.1531 -6.5662 0.9865 23 6 4.0441 -7.6170 0.8737 24 6 4.2428 -8.2262 -0.3512 25 6 3.5483 -7.7865 -1.4626 26 6 2.6545 -6.7382 -1.3489 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6246 -2.5571 0.8898 30 1 2.8719 -3.6044 0.8895 31 1 2.8717 -3.6044 -0.8906 32 1 1.0277 -4.6466 2.0464 33 1 -0.7638 -5.5408 3.2465 34 1 -2.1620 -7.6950 1.8176 35 1 -1.6542 -7.2982 4.6168 36 1 -3.0495 -8.3056 4.0179 37 1 -4.3512 -6.5959 1.7475 38 1 -3.3442 -5.0792 1.6711 39 1 3.0001 -6.0883 1.9429 40 1 4.5870 -7.9603 1.7419 41 1 4.9410 -9.0454 -0.4399 42 1 3.7038 -8.2622 -2.4196 43 1 2.1121 -6.3944 -2.2174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229131914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:41 Heat of formation + Delta-G solvation = 9.558878 kcal Electronic energy + Delta-G solvation = -24408.053196 eV Core-core repulsion = 20965.730367 eV Total energy + Delta-G solvation = -3442.322829 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18460 -38.95864 -36.71043 -35.39229 -33.22361 -32.31428 -30.79342 -30.45615 -30.34040 -27.24455 -26.45755 -23.70115 -22.56031 -22.01581 -21.05926 -20.60741 -19.96131 -18.36007 -16.96084 -16.78221 -16.52166 -16.13414 -15.45466 -15.17261 -14.77668 -14.48681 -14.25671 -14.03351 -13.59429 -13.42170 -13.23034 -13.20342 -13.06744 -12.82060 -12.75086 -12.51786 -12.11416 -11.96900 -11.73098 -11.13930 -10.98900 -10.93839 -10.65057 -10.54023 -10.11092 -9.82379 -9.72912 -9.58609 -9.16246 -9.13972 -8.75140 -8.63952 -8.43335 -8.37664 -7.93972 -6.02999 -4.06048 1.42007 1.53133 1.58270 1.87448 2.76133 3.28756 3.36895 3.39292 3.40340 3.96137 4.04629 4.34679 4.41424 4.43914 4.87970 5.02558 5.05190 5.07476 5.13633 5.18561 5.28710 5.33037 5.43073 5.56448 5.61840 5.66688 5.77500 5.89566 6.12758 6.19351 6.35494 6.43759 6.55415 6.63663 6.66355 6.74661 6.91893 6.96777 7.14008 7.18666 7.63800 7.74937 7.96204 8.20199 8.37345 8.81242 9.01356 9.58610 11.07805 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.007110 B = 0.004729 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3937.350733 B = 5919.972993 C = 9225.624348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.113 4.113 11 C 0.200 3.800 12 H 0.094 0.906 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.590 6.590 16 N -0.732 5.732 17 C 0.141 3.859 18 C -0.075 4.075 19 S -0.314 6.314 20 C -0.071 4.071 21 C -0.078 4.078 22 C -0.106 4.106 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.106 4.106 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.019 0.981 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.398 0.602 33 H 0.402 0.598 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -18.008 5.905 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.151 4.151 11 C 0.095 3.905 12 H 0.112 0.888 13 N -0.376 5.376 14 C 0.409 3.591 15 O -0.468 6.468 16 N -0.388 5.388 17 C 0.033 3.967 18 C -0.224 4.224 19 S -0.090 6.090 20 C -0.221 4.221 21 C -0.079 4.079 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.124 4.124 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.232 0.768 33 H 0.237 0.763 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.659 -17.612 5.893 18.583 hybrid contribution 1.088 0.798 0.011 1.349 sum 0.429 -16.814 5.904 17.825 Atomic orbital electron populations 1.69974 1.06034 1.26497 1.50664 1.25007 0.94793 0.99208 0.95281 0.86577 0.80143 0.83932 0.77595 1.19736 1.21025 1.21054 1.21267 0.93033 0.91006 1.50776 0.92638 1.19091 0.93691 0.90869 0.97556 1.21987 0.99132 0.92266 1.01694 1.19994 0.91228 0.92895 0.86355 0.88822 1.45114 1.27599 1.50517 1.14391 1.15888 0.79993 0.79966 0.83218 1.90901 1.70669 1.51185 1.34051 1.44917 1.28318 1.52845 1.12718 1.22474 0.84756 0.93593 0.95916 1.25102 1.01101 0.98277 0.97882 1.88700 1.69700 1.38407 1.12161 1.25415 0.99770 1.04642 0.92295 1.20448 0.97014 0.96928 0.93539 1.20890 0.96287 0.96933 0.98355 1.21060 0.98907 0.96890 0.97431 1.21048 1.00324 1.00355 0.93174 1.21073 0.97105 0.97355 0.98438 1.21036 0.98168 0.95826 0.97383 0.93056 0.96560 0.96303 0.92577 0.91405 0.76779 0.76339 0.87736 0.86693 0.86504 0.86984 0.86515 0.86564 0.86624 0.86681 0.86414 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.86 -27.88 -0.14 0.47 16 10 C -0.11 -2.14 4.67 -26.73 -0.12 -2.27 16 11 C 0.20 3.37 2.17 -69.08 -0.15 3.22 16 12 H 0.09 1.79 7.44 -51.93 -0.39 1.40 16 13 N -0.72 -10.99 3.78 -59.81 -0.23 -11.22 16 14 C 0.71 11.11 8.52 -86.91 -0.74 10.37 16 15 O -0.59 -11.28 15.64 5.29 0.08 -11.19 16 16 N -0.73 -8.76 5.06 -90.44 -0.46 -9.22 16 17 C 0.14 1.49 3.32 -64.80 -0.21 1.27 16 18 C -0.07 -0.59 8.68 38.70 0.34 -0.25 16 19 S -0.31 -3.54 23.94 -107.50 -2.57 -6.11 16 20 C -0.07 -0.79 8.78 38.75 0.34 -0.45 16 21 C -0.08 -1.19 4.91 -104.62 -0.51 -1.71 16 22 C -0.11 -1.46 9.32 -39.58 -0.37 -1.83 16 23 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 24 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 25 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 26 C -0.11 -1.54 9.67 -39.59 -0.38 -1.92 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.48 7.75 -51.93 -0.40 0.07 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.40 5.38 8.62 -40.82 -0.35 5.03 16 33 H 0.40 4.13 8.67 -40.82 -0.35 3.78 16 34 H 0.10 1.18 7.53 -51.93 -0.39 0.79 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.12 1.45 7.73 -52.49 -0.41 1.04 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.12 1.70 8.04 -52.48 -0.42 1.28 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -32.87 375.16 -11.85 -44.71 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.48 Total: 8.68 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -3.56 Total: -11.93 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.05 Total: -46.08 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.57 Total: -6.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.87 -11.85 -44.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229131914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.273 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds