Wall clock time and date at job start Tue Mar 31 2020 13:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00286 * 2 1 4 4 H 1.48499 * 109.47300 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47071 * 299.99978 * 3 2 1 6 6 H 1.48505 * 109.47115 * 60.00014 * 3 2 1 7 7 C 1.37883 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00403 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46920 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46893 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47676 * 54.99768 * 11 10 9 13 13 N 1.46507 * 109.47309 * 294.99666 * 11 10 9 14 14 C 1.34778 * 119.99899 * 155.00164 * 13 11 10 15 15 O 1.21586 * 120.00134 * 359.97438 * 14 13 11 16 16 N 1.34783 * 119.99531 * 180.02562 * 14 13 11 17 17 C 1.46500 * 119.99679 * 179.97438 * 16 14 13 18 18 C 1.55885 * 110.81975 * 154.99942 * 17 16 14 19 19 S 1.83083 * 82.48198 * 94.34863 * 18 17 16 20 20 C 1.55971 * 110.82157 * 268.60204 * 17 16 14 21 21 C 1.50700 * 109.47284 * 174.99846 * 11 10 9 22 22 C 1.38235 * 120.00275 * 79.72294 * 21 11 10 23 23 C 1.38232 * 120.00257 * 179.81532 * 22 21 11 24 24 C 1.38238 * 119.99674 * 0.39309 * 23 22 21 25 25 C 1.38233 * 119.99967 * 359.86095 * 24 23 22 26 26 C 1.38226 * 120.00158 * 359.95428 * 25 24 23 27 27 H 0.97005 * 119.99987 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.46998 * 60.00176 * 9 7 2 29 29 H 1.09005 * 109.46941 * 299.99791 * 9 7 2 30 30 H 1.09002 * 109.46888 * 59.99741 * 10 9 7 31 31 H 1.08996 * 109.46567 * 299.99537 * 10 9 7 32 32 H 0.96994 * 119.99512 * 335.00450 * 13 11 10 33 33 H 0.96994 * 119.99880 * 0.02562 * 16 14 13 34 34 H 1.08996 * 110.39850 * 31.82605 * 17 16 14 35 35 H 1.09002 * 114.38293 * 340.93647 * 18 17 16 36 36 H 1.09002 * 114.37878 * 207.75921 * 18 17 16 37 37 H 1.09001 * 114.34534 * 152.25527 * 20 17 16 38 38 H 1.09000 * 114.43566 * 19.05497 * 20 17 16 39 39 H 1.08001 * 119.99707 * 0.02562 * 22 21 11 40 40 H 1.07997 * 119.99961 * 180.23083 * 23 22 21 41 41 H 1.08004 * 119.99702 * 179.83240 * 24 23 22 42 42 H 1.08002 * 119.99730 * 179.97438 * 25 24 23 43 43 H 1.08009 * 120.00120 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7877 -5.0073 -0.8415 13 7 0.7309 -5.1178 1.2523 14 6 -0.3707 -5.8928 1.3006 15 8 -0.7429 -6.4831 0.3050 16 7 -1.0602 -6.0126 2.4525 17 6 -2.2580 -6.8546 2.5050 18 6 -2.5208 -7.3542 3.9580 19 16 -3.6070 -5.8814 4.0110 20 6 -3.5366 -6.0200 2.1867 21 6 2.4547 -6.1299 -0.1238 22 6 3.1531 -6.5662 0.9865 23 6 4.0441 -7.6170 0.8737 24 6 4.2428 -8.2262 -0.3512 25 6 3.5483 -7.7865 -1.4626 26 6 2.6545 -6.7382 -1.3489 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6246 -2.5571 0.8898 30 1 2.8719 -3.6044 0.8895 31 1 2.8717 -3.6044 -0.8906 32 1 1.0277 -4.6466 2.0464 33 1 -0.7638 -5.5408 3.2465 34 1 -2.1620 -7.6950 1.8176 35 1 -1.6542 -7.2982 4.6168 36 1 -3.0495 -8.3056 4.0179 37 1 -4.3512 -6.5959 1.7475 38 1 -3.3442 -5.0792 1.6711 39 1 3.0001 -6.0883 1.9429 40 1 4.5870 -7.9603 1.7419 41 1 4.9410 -9.0454 -0.4399 42 1 3.7038 -8.2622 -2.4196 43 1 2.1121 -6.3944 -2.2174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229131914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:40 Heat of formation + Delta-G solvation = -10.188880 kcal Electronic energy + Delta-G solvation = -24408.909523 eV Core-core repulsion = 20965.730367 eV Total energy + Delta-G solvation = -3443.179156 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40379 -40.02041 -37.79327 -36.75413 -35.13211 -33.61769 -32.05854 -31.76827 -31.46027 -28.14764 -28.03558 -25.37050 -23.59426 -23.04912 -22.57910 -21.74530 -21.29550 -19.56294 -18.53004 -17.93397 -17.67898 -17.34637 -16.67347 -16.52805 -16.19054 -15.85775 -15.43894 -15.22779 -14.76337 -14.64188 -14.39173 -14.19926 -14.10754 -14.03644 -13.86184 -13.70739 -13.67955 -13.36092 -12.88650 -12.79185 -12.52345 -12.41977 -12.11641 -11.89668 -11.75829 -11.42793 -11.30587 -11.18276 -10.67011 -10.55793 -10.27483 -9.85146 -9.73574 -9.53423 -8.83707 -8.18705 -6.29631 0.49534 0.57678 0.60374 1.05945 1.39826 1.41141 1.53537 1.64723 2.15684 2.41305 2.93713 3.15191 3.22743 3.30761 3.49658 3.85982 4.01209 4.11350 4.19817 4.26316 4.33070 4.34222 4.38781 4.53770 4.58380 4.62791 4.68821 4.70051 4.80467 5.00605 5.12232 5.20656 5.22099 5.42545 5.47407 5.52634 5.63766 5.66756 5.70252 5.81098 5.86195 6.00353 6.18537 6.25050 6.87925 7.06261 7.40012 7.58418 8.92588 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.007110 B = 0.004729 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3937.350733 B = 5919.972993 C = 9225.624348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.033 3.967 10 C -0.095 4.095 11 C 0.213 3.787 12 H 0.061 0.939 13 N -0.720 5.720 14 C 0.707 3.293 15 O -0.628 6.628 16 N -0.719 5.719 17 C 0.136 3.864 18 C -0.039 4.039 19 S -0.363 6.363 20 C -0.069 4.069 21 C -0.097 4.097 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.129 4.129 27 H 0.261 0.739 28 H -0.021 1.021 29 H 0.003 0.997 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.406 0.594 33 H 0.411 0.589 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 -19.642 7.400 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.132 4.132 11 C 0.108 3.892 12 H 0.079 0.921 13 N -0.373 5.373 14 C 0.406 3.594 15 O -0.509 6.509 16 N -0.375 5.375 17 C 0.028 3.972 18 C -0.187 4.187 19 S -0.139 6.139 20 C -0.219 4.219 21 C -0.098 4.098 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.147 4.147 27 H 0.070 0.930 28 H -0.003 1.003 29 H 0.021 0.979 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.242 0.758 33 H 0.248 0.752 34 H 0.119 0.881 35 H 0.152 0.848 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.489 -19.248 7.429 20.686 hybrid contribution 0.412 1.238 -0.469 1.386 sum 1.902 -18.010 6.961 19.402 Atomic orbital electron populations 1.70115 1.07820 1.27492 1.51880 1.25921 0.95609 1.03185 0.94868 0.85467 0.79281 0.79128 0.77583 1.18365 1.20864 1.20468 1.21718 0.93576 0.92207 1.50139 0.91968 1.18931 0.94015 0.92539 0.94926 1.21712 0.97891 0.91432 1.02213 1.19577 0.90868 0.92793 0.85997 0.92115 1.44989 1.27641 1.50567 1.14145 1.16030 0.80025 0.79658 0.83640 1.90870 1.71594 1.52740 1.35656 1.44824 1.28174 1.52634 1.11827 1.22695 0.83586 0.92971 0.97922 1.25258 1.00548 0.97495 0.95373 1.88877 1.71154 1.41405 1.12509 1.25385 1.00871 1.03759 0.91885 1.20269 0.97680 0.97135 0.94731 1.21064 0.96495 0.97624 0.98082 1.21430 0.98175 0.95920 0.98729 1.21473 0.99947 1.00579 0.92550 1.21368 0.96333 0.96543 1.00052 1.21174 0.99335 0.97139 0.97083 0.93001 1.00304 0.97867 0.91068 0.91679 0.75772 0.75193 0.88139 0.84791 0.83564 0.85131 0.89331 0.85593 0.83734 0.83519 0.84204 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -29.81 9.11 25.60 0.23 -29.58 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.68 4.86 29.85 0.15 1.83 16 10 C -0.09 -3.69 4.67 30.59 0.14 -3.55 16 11 C 0.21 7.51 2.17 44.24 0.10 7.60 16 12 H 0.06 2.52 7.44 -2.38 -0.02 2.50 16 13 N -0.72 -22.53 3.78 -461.39 -1.75 -24.27 16 14 C 0.71 22.75 8.52 179.05 1.53 24.28 16 15 O -0.63 -24.97 15.64 -3.99 -0.06 -25.04 16 16 N -0.72 -17.09 5.06 -558.31 -2.82 -19.91 16 17 C 0.14 2.76 3.32 47.02 0.16 2.92 16 18 C -0.04 -0.51 8.68 72.98 0.63 0.12 16 19 S -0.36 -7.98 23.94 -56.49 -1.35 -9.33 16 20 C -0.07 -1.56 8.78 73.01 0.64 -0.92 16 21 C -0.10 -2.97 4.91 -19.87 -0.10 -3.07 16 22 C -0.11 -2.96 9.32 22.27 0.21 -2.75 16 23 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 24 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 25 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 26 C -0.13 -3.79 9.67 22.27 0.22 -3.57 16 27 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 28 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 29 H 0.00 0.16 7.75 -2.38 -0.02 0.14 16 30 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.41 11.09 8.62 -92.71 -0.80 10.29 16 33 H 0.41 8.18 8.67 -92.71 -0.80 7.38 16 34 H 0.10 2.19 7.53 -2.39 -0.02 2.17 16 35 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.13 2.91 7.73 -2.91 -0.02 2.88 16 40 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 41 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.11 3.38 8.04 -2.91 -0.02 3.35 16 Total: -1.00 -73.66 375.16 0.78 -72.88 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.58 Total: 29.87 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.03 Total: -13.71 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -4.28 Total: -100.58 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.35 Total: -9.33 kcal Total: -73.66 0.78 -72.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229131914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.695 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds