Wall clock time and date at job start Tue Mar 31 2020 13:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00304 * 2 1 4 4 H 1.48499 * 109.47218 * 240.00191 * 3 2 1 5 5 H 1.48503 * 109.46859 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47271 * 119.99937 * 3 2 1 7 7 C 1.37879 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47325 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47132 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47906 * 305.00154 * 11 10 9 13 13 N 1.46500 * 109.47214 * 65.00443 * 11 10 9 14 14 C 1.34779 * 120.00202 * 204.99694 * 13 11 10 15 15 O 1.21584 * 119.99748 * 0.02562 * 14 13 11 16 16 N 1.34772 * 119.99912 * 179.97438 * 14 13 11 17 17 C 1.46505 * 120.00203 * 180.02562 * 16 14 13 18 18 C 1.55879 * 110.82220 * 205.00265 * 17 16 14 19 19 S 1.83090 * 82.43737 * 217.25479 * 18 17 16 20 20 C 1.55880 * 110.82332 * 91.34664 * 17 16 14 21 21 C 1.50700 * 109.47088 * 185.00298 * 11 10 9 22 22 C 1.38237 * 119.99884 * 279.72742 * 21 11 10 23 23 C 1.38235 * 120.00248 * 179.78736 * 22 21 11 24 24 C 1.38239 * 119.99527 * 0.44354 * 23 22 21 25 25 C 1.38235 * 120.00279 * 359.81344 * 24 23 22 26 26 C 1.38231 * 119.99644 * 359.97424 * 25 24 23 27 27 H 0.96998 * 119.99602 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47535 * 59.99517 * 9 7 2 29 29 H 1.09002 * 109.46973 * 299.99200 * 9 7 2 30 30 H 1.09004 * 109.46713 * 59.99621 * 10 9 7 31 31 H 1.08993 * 109.47315 * 300.00280 * 10 9 7 32 32 H 0.97008 * 119.99958 * 24.99824 * 13 11 10 33 33 H 0.97003 * 120.00561 * 359.97438 * 16 14 13 34 34 H 1.09002 * 110.43105 * 328.20055 * 17 16 14 35 35 H 1.09000 * 114.38475 * 103.86903 * 18 17 16 36 36 H 1.09001 * 114.41760 * 330.65039 * 18 17 16 37 37 H 1.09005 * 114.37998 * 29.34856 * 20 17 16 38 38 H 1.09002 * 114.38173 * 256.13911 * 20 17 16 39 39 H 1.08004 * 119.99936 * 0.02562 * 22 21 11 40 40 H 1.08001 * 120.00671 * 180.27475 * 23 22 21 41 41 H 1.08004 * 119.99880 * 179.83707 * 24 23 22 42 42 H 1.07997 * 120.00178 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.99512 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7882 -5.0068 0.8432 13 7 0.7301 -5.1185 -1.2504 14 6 -0.3716 -5.8935 -1.2976 15 8 -0.7432 -6.4832 -0.3014 16 7 -1.0618 -6.0140 -2.4489 17 6 -2.2597 -6.8559 -2.5002 18 6 -2.5234 -7.3564 -3.9527 19 16 -4.2696 -7.1023 -3.4646 20 6 -3.5373 -6.0220 -2.1805 21 6 2.4547 -6.1298 0.1251 22 6 3.1440 -6.5741 -0.9878 23 6 4.0412 -7.6195 -0.8733 24 6 4.2424 -8.2265 0.3522 25 6 3.5493 -7.7857 1.4640 26 6 2.6553 -6.7375 1.3504 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8894 32 1 1.0264 -4.6477 -2.0451 33 1 -0.7660 -5.5426 -3.2434 34 1 -2.1640 -7.6960 -1.8123 35 1 -2.2518 -8.3976 -4.1262 36 1 -2.1714 -6.6813 -4.7328 37 1 -3.4704 -4.9709 -2.4613 38 1 -3.9378 -6.1784 -1.1789 39 1 2.9843 -6.1020 -1.9460 40 1 4.5830 -7.9637 -1.7419 41 1 4.9415 -9.0449 0.4412 42 1 3.7068 -8.2596 2.4216 43 1 2.1141 -6.3928 2.2191 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229131936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:43 Heat of formation + Delta-G solvation = -13.072308 kcal Electronic energy + Delta-G solvation = -24333.903564 eV Core-core repulsion = 20890.599373 eV Total energy + Delta-G solvation = -3443.304191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37514 -40.00194 -37.75699 -36.73944 -35.11980 -33.65861 -32.08347 -31.77258 -31.48407 -28.14129 -28.05511 -25.36071 -23.59364 -23.04562 -22.57104 -21.82965 -21.28878 -19.49627 -18.51004 -18.13247 -17.64539 -17.17162 -16.69713 -16.54142 -16.17510 -15.83742 -15.39836 -15.31577 -14.99617 -14.59769 -14.51444 -14.20873 -14.15294 -14.08451 -13.86087 -13.67821 -13.36443 -13.00261 -12.82354 -12.77926 -12.53346 -12.44388 -12.12535 -11.88365 -11.75332 -11.42204 -11.39362 -11.20026 -10.85774 -10.53181 -10.35161 -9.85472 -9.73565 -9.53187 -8.89561 -8.17291 -6.28151 0.48949 0.54360 0.57589 0.98937 1.41959 1.43969 1.51715 1.72883 2.18303 2.42454 2.94176 3.16358 3.18524 3.35895 3.47722 3.86702 3.90508 4.01861 4.19876 4.27127 4.29809 4.34089 4.39644 4.50328 4.59905 4.68427 4.70156 4.73404 4.82029 5.01668 5.12915 5.21192 5.22468 5.39806 5.48475 5.53575 5.63687 5.66697 5.71313 5.82805 5.87487 6.02747 6.18611 6.26442 6.88848 7.10418 7.41272 7.61299 8.93486 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.007407 B = 0.004349 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3779.378732 B = 6436.344546 C = 9624.402945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.034 3.966 10 C -0.094 4.094 11 C 0.213 3.787 12 H 0.059 0.941 13 N -0.719 5.719 14 C 0.704 3.296 15 O -0.631 6.631 16 N -0.726 5.726 17 C 0.145 3.855 18 C -0.044 4.044 19 S -0.342 6.342 20 C -0.073 4.073 21 C -0.097 4.097 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.130 4.130 27 H 0.261 0.739 28 H 0.006 0.994 29 H -0.022 1.022 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.408 0.592 33 H 0.413 0.587 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 -17.292 -8.620 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.003 4.003 10 C -0.132 4.132 11 C 0.107 3.893 12 H 0.078 0.922 13 N -0.373 5.373 14 C 0.403 3.597 15 O -0.512 6.512 16 N -0.383 5.383 17 C 0.037 3.963 18 C -0.192 4.192 19 S -0.117 6.117 20 C -0.223 4.223 21 C -0.098 4.098 22 C -0.132 4.132 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.148 4.148 27 H 0.070 0.930 28 H 0.024 0.976 29 H -0.004 1.004 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.244 0.756 33 H 0.250 0.750 34 H 0.121 0.879 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.804 -18.118 -8.120 19.936 hybrid contribution 0.977 2.046 0.164 2.273 sum 2.782 -16.072 -7.957 18.148 Atomic orbital electron populations 1.70098 1.07744 1.27612 1.51709 1.25897 0.95610 1.03068 0.94846 0.85595 0.78312 0.78521 0.79185 1.18846 1.21253 1.19572 1.21662 0.93561 0.92265 1.50411 0.92046 1.18921 0.93994 0.92405 0.95010 1.21709 0.97907 0.91433 1.02186 1.19564 0.90832 0.92751 0.86154 0.92234 1.44996 1.27573 1.50652 1.14087 1.16152 0.80012 0.79585 0.83916 1.90875 1.71628 1.52840 1.35860 1.45262 1.28793 1.52555 1.11709 1.23715 0.82205 0.93087 0.97328 1.25328 0.89036 1.07878 0.96974 1.88756 1.16549 1.61886 1.44558 1.25438 0.95547 1.01268 1.00043 1.20287 0.97753 0.97128 0.94666 1.21075 0.96463 0.97585 0.98086 1.21439 0.98121 0.96020 0.98692 1.21473 0.99988 1.00569 0.92593 1.21366 0.96388 0.96585 1.00042 1.21175 0.99338 0.97155 0.97168 0.92979 0.97585 1.00388 0.91862 0.90972 0.75624 0.74963 0.87892 0.84410 0.84495 0.87018 0.87793 0.85397 0.83687 0.83569 0.84295 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 43.12 29.54 68.60 2.03 45.14 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.54 -29.47 9.11 25.60 0.23 -29.24 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.69 4.86 29.85 0.15 1.83 16 10 C -0.09 -3.61 4.67 30.59 0.14 -3.47 16 11 C 0.21 7.37 2.17 44.24 0.10 7.46 16 12 H 0.06 2.45 7.44 -2.39 -0.02 2.43 16 13 N -0.72 -21.61 3.76 -461.42 -1.74 -23.34 16 14 C 0.70 21.98 8.52 179.06 1.53 23.50 16 15 O -0.63 -25.17 15.64 -3.98 -0.06 -25.23 16 16 N -0.73 -15.77 5.20 -559.06 -2.91 -18.68 16 17 C 0.14 2.96 3.20 46.98 0.15 3.11 16 18 C -0.04 -0.59 8.70 72.98 0.64 0.04 16 19 S -0.34 -7.20 24.06 -56.49 -1.36 -8.56 16 20 C -0.07 -1.66 8.78 72.98 0.64 -1.02 16 21 C -0.10 -2.95 4.91 -19.87 -0.10 -3.05 16 22 C -0.11 -2.90 9.33 22.27 0.21 -2.69 16 23 C -0.12 -2.66 10.05 22.27 0.22 -2.44 16 24 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 25 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 26 C -0.13 -3.84 9.67 22.27 0.22 -3.62 16 27 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.01 0.30 7.75 -2.38 -0.02 0.28 16 29 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 30 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.41 10.32 8.62 -92.70 -0.80 9.52 16 33 H 0.41 6.38 8.63 -92.71 -0.80 5.58 16 34 H 0.10 2.52 7.53 -2.39 -0.02 2.50 16 35 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.14 1.22 8.07 -2.39 -0.02 1.20 16 37 H 0.11 2.52 8.14 -2.38 -0.02 2.51 16 38 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.13 2.85 7.71 -2.91 -0.02 2.82 16 40 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.11 3.38 8.04 -2.91 -0.02 3.36 16 Total: -1.00 -72.68 375.20 0.70 -71.98 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -0.58 Total: 28.09 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 5.03 Total: -14.13 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -4.36 Total: -97.30 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.06 Total: -25.23 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -7.20 SS G_CDS: -1.36 Total: -8.56 kcal Total: -72.68 0.70 -71.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229131936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.911 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds