Wall clock time and date at job start Tue Mar 31 2020 12:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45193 * 109.47083 * 2 1 4 4 C 1.34231 * 116.99978 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00023 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00179 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.47026 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.47536 * 55.00544 * 7 6 4 9 9 C 1.50703 * 109.47185 * 175.00409 * 7 6 4 10 10 H 1.08005 * 120.00296 * 240.00278 * 9 7 6 11 11 C 1.37878 * 120.00089 * 59.99727 * 9 7 6 12 12 N 1.31516 * 119.99725 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00064 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47106 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47000 * 120.00108 * 13 11 9 16 16 H 1.48498 * 109.46822 * 240.00017 * 13 11 9 17 17 O 1.42907 * 109.47384 * 294.99961 * 7 6 4 18 18 C 1.35237 * 116.99799 * 156.60177 * 17 7 6 19 19 C 1.36821 * 120.55173 * 185.70133 * 18 17 7 20 20 C 1.39430 * 119.17158 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.79276 * 179.97438 * 20 19 18 22 22 N 1.31587 * 120.40577 * 359.97438 * 20 19 18 23 23 C 1.33813 * 121.01781 * 0.02562 * 22 20 19 24 24 N 1.32830 * 132.49869 * 179.97438 * 23 22 20 25 25 C 1.32724 * 109.73157 * 179.24406 * 24 23 22 26 26 N 1.31082 * 109.62733 * 0.68014 * 25 24 23 27 27 N 1.36320 * 120.56113 * 5.42088 * 18 17 7 28 28 H 1.09004 * 109.47042 * 60.00104 * 1 2 3 29 29 H 1.09003 * 109.47330 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47462 * 300.00325 * 1 2 3 31 31 H 1.08994 * 109.47037 * 239.99515 * 2 1 3 32 32 H 1.08998 * 109.46667 * 119.99677 * 2 1 3 33 33 H 1.09003 * 109.46756 * 60.00252 * 6 4 3 34 34 H 1.08994 * 109.47407 * 300.00497 * 6 4 3 35 35 H 0.97001 * 119.99901 * 180.02562 * 12 11 9 36 36 H 1.07997 * 120.41763 * 359.97383 * 19 18 17 37 37 H 1.09005 * 109.47183 * 90.00196 * 21 20 19 38 38 H 1.09003 * 109.46488 * 209.99733 * 21 20 19 39 39 H 1.08995 * 109.47579 * 329.99853 * 21 20 19 40 40 H 1.08002 * 125.18006 * 180.12255 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4486 2.8572 0.0001 8 1 5.7807 2.2493 -0.8414 9 6 6.0244 4.2443 -0.1242 10 1 6.6593 4.4925 -0.9619 11 6 5.7407 5.1967 0.8316 12 7 4.9680 4.8945 1.8520 13 14 6.4539 6.9163 0.6772 14 1 7.2837 6.9996 -0.5516 15 1 5.3489 7.9050 0.5956 16 1 7.2956 7.2115 1.8644 17 8 5.8945 2.2642 1.2215 18 6 7.1127 1.6770 1.2100 19 6 7.5624 0.9869 2.3025 20 6 8.8233 0.3933 2.2595 21 6 9.3328 -0.3697 3.4551 22 7 9.5711 0.4952 1.1816 23 6 9.1431 1.1673 0.1065 24 7 9.6940 1.4111 -1.0773 25 6 8.8565 2.1204 -1.8237 26 7 7.7611 2.3639 -1.1462 27 7 7.9108 1.7581 0.1079 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4700 0.8896 34 1 3.5853 3.4690 -0.8904 35 1 4.7681 5.5646 2.5242 36 1 6.9489 0.9036 3.1873 37 1 9.0373 -1.4156 3.3716 38 1 10.4200 -0.3014 3.4933 39 1 8.9098 0.0558 4.3650 40 1 9.0518 2.4543 -2.8321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229311283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:25 Heat of formation + Delta-G solvation = 15.920929 kcal Electronic energy + Delta-G solvation = -27823.050358 eV Core-core repulsion = 23834.710194 eV Total energy + Delta-G solvation = -3988.340164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.24207 -39.97884 -38.71267 -37.75719 -36.12301 -33.84057 -32.76137 -31.72476 -31.66221 -30.74634 -29.49384 -28.06038 -26.40498 -23.66534 -23.47738 -22.62359 -21.72308 -21.39046 -20.21676 -18.11694 -17.33675 -17.30733 -16.84020 -16.45775 -16.18325 -15.72742 -15.55603 -14.86717 -14.55578 -14.10046 -13.91822 -13.72934 -13.57883 -13.43328 -12.86297 -12.70810 -12.61578 -12.35437 -12.30050 -12.01690 -11.90708 -11.51831 -11.44268 -11.36553 -11.16901 -10.95182 -10.83843 -10.39000 -10.27397 -9.91258 -9.79184 -9.53157 -9.36045 -9.18448 -8.94136 -8.87311 -7.57090 -6.42105 -4.58618 1.24764 1.48545 2.48049 2.82740 3.06203 3.15831 3.18954 3.23868 3.25627 3.70394 3.88182 4.03260 4.13316 4.73625 4.91638 4.99397 5.05280 5.11192 5.26995 5.28026 5.35922 5.50524 5.65692 5.69738 5.79035 5.80727 5.94872 5.98279 6.06739 6.13274 6.32555 6.34657 6.47675 6.74474 6.80328 6.89914 6.95514 7.13949 7.56076 7.71463 7.89383 8.21056 8.33308 8.55788 8.66960 9.17940 10.59543 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008993 B = 0.006051 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.620834 B = 4625.969611 C = 6264.321168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.457 3.543 5 O -0.520 6.520 6 C -0.102 4.102 7 C 0.210 3.790 8 H 0.068 0.932 9 C -0.535 4.535 10 H 0.082 0.918 11 C 0.076 3.924 12 N -0.863 5.863 13 Si 0.899 3.101 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.281 1.281 17 O -0.265 6.265 18 C 0.464 3.536 19 C -0.313 4.313 20 C 0.254 3.746 21 C -0.100 4.100 22 N -0.514 5.514 23 C 0.469 3.531 24 N -0.549 5.549 25 C 0.224 3.776 26 N -0.297 5.297 27 N -0.354 5.354 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.142 0.858 34 H 0.109 0.891 35 H 0.269 0.731 36 H 0.164 0.836 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.571 -7.065 1.002 7.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.302 3.698 5 O -0.408 6.408 6 C -0.140 4.140 7 C 0.158 3.842 8 H 0.086 0.914 9 C -0.572 4.572 10 H 0.100 0.900 11 C -0.131 4.131 12 N -0.499 5.499 13 Si 0.725 3.275 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.207 1.207 17 O -0.165 6.165 18 C 0.298 3.702 19 C -0.341 4.341 20 C 0.096 3.904 21 C -0.157 4.157 22 N -0.239 5.239 23 C 0.109 3.891 24 N -0.285 5.285 25 C -0.078 4.078 26 N -0.126 5.126 27 N -0.147 5.147 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.159 0.841 34 H 0.127 0.873 35 H 0.079 0.921 36 H 0.182 0.818 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.180 -7.191 0.610 7.887 hybrid contribution -0.511 1.283 0.034 1.382 sum -3.691 -5.908 0.644 6.996 Atomic orbital electron populations 1.21783 0.93131 1.02436 1.03391 1.22884 0.94982 0.81558 1.02101 1.86570 1.25837 1.31196 1.84560 1.24863 0.79668 0.94176 0.71079 1.90594 1.60337 1.43715 1.46130 1.21859 0.95994 0.88411 1.07691 1.20529 0.88904 0.94289 0.80482 0.91439 1.21532 1.31540 0.93523 1.10568 0.90033 1.25201 0.93837 0.99432 0.94586 1.69851 1.34346 1.34763 1.10956 0.86408 0.79233 0.83192 0.78619 1.19293 1.20344 1.20721 1.86367 1.24552 1.63684 1.41850 1.19903 0.82762 0.84816 0.82762 1.20611 1.00951 1.12482 1.00066 1.21432 0.87991 0.88746 0.92255 1.20750 1.02752 0.99543 0.92704 1.67756 1.34323 1.23185 0.98661 1.22738 0.80713 0.91759 0.93932 1.70797 1.30731 1.26038 1.00933 1.26258 0.87572 0.93500 1.00446 1.78881 1.22842 1.21729 0.89106 1.49363 1.15779 1.37382 1.12202 0.91657 0.90732 0.91542 0.91834 0.91661 0.84058 0.87296 0.92088 0.81838 0.89405 0.89777 0.89690 0.76256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.83 6.19 37.16 0.23 1.06 16 3 O -0.36 -6.43 10.22 -39.26 -0.40 -6.83 16 4 C 0.46 9.35 7.84 36.01 0.28 9.63 16 5 O -0.52 -11.71 15.17 -24.05 -0.36 -12.08 16 6 C -0.10 -2.19 5.22 -27.89 -0.15 -2.34 16 7 C 0.21 5.00 1.33 -27.88 -0.04 4.97 16 8 H 0.07 1.67 5.56 -51.93 -0.29 1.38 16 9 C -0.53 -13.41 7.58 -34.44 -0.26 -13.67 16 10 H 0.08 2.10 7.05 -52.48 -0.37 1.73 16 11 C 0.08 1.91 5.24 -17.82 -0.09 1.81 16 12 N -0.86 -21.78 10.93 55.43 0.61 -21.17 16 13 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 O -0.26 -6.41 8.41 -31.83 -0.27 -6.68 16 18 C 0.46 10.49 7.37 -16.07 -0.12 10.37 16 19 C -0.31 -5.85 9.67 -39.65 -0.38 -6.23 16 20 C 0.25 4.31 6.81 -82.25 -0.56 3.75 16 21 C -0.10 -1.11 10.18 36.01 0.37 -0.75 16 22 N -0.51 -10.34 10.40 -10.15 -0.11 -10.44 16 23 C 0.47 10.43 9.00 -323.15 -2.91 7.52 16 24 N -0.55 -11.79 11.26 -15.66 -0.18 -11.96 16 25 C 0.22 4.35 12.98 -91.96 -1.19 3.15 16 26 N -0.30 -6.63 7.74 29.26 0.23 -6.41 16 27 N -0.35 -8.15 3.69 -13.93 -0.05 -8.20 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 32 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.14 3.25 6.22 -51.93 -0.32 2.93 16 34 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 35 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 36 H 0.16 2.61 8.06 -52.49 -0.42 2.19 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.22 3.09 8.06 -52.49 -0.42 2.67 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -31.62 344.84 -9.56 -41.19 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.76 Total: 4.36 kcal Atomic # 6 Polarization: 22.55 SS G_CDS: -4.44 Total: 18.11 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.50 Total: -58.18 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.03 Total: -25.58 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.62 -9.56 -41.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229311283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.107 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds