Wall clock time and date at job start Tue Mar 31 2020 12:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45193 * 109.47083 * 2 1 4 4 C 1.34231 * 116.99978 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00023 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00179 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.47026 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.47536 * 55.00544 * 7 6 4 9 9 C 1.50703 * 109.47185 * 175.00409 * 7 6 4 10 10 H 1.08005 * 120.00296 * 240.00278 * 9 7 6 11 11 C 1.37878 * 120.00089 * 59.99727 * 9 7 6 12 12 N 1.31516 * 119.99725 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00064 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47106 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47000 * 120.00108 * 13 11 9 16 16 H 1.48498 * 109.46822 * 240.00017 * 13 11 9 17 17 O 1.42907 * 109.47384 * 294.99961 * 7 6 4 18 18 C 1.35237 * 116.99799 * 156.60177 * 17 7 6 19 19 C 1.36821 * 120.55173 * 185.70133 * 18 17 7 20 20 C 1.39430 * 119.17158 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.79276 * 179.97438 * 20 19 18 22 22 N 1.31587 * 120.40577 * 359.97438 * 20 19 18 23 23 C 1.33813 * 121.01781 * 0.02562 * 22 20 19 24 24 N 1.32830 * 132.49869 * 179.97438 * 23 22 20 25 25 C 1.32724 * 109.73157 * 179.24406 * 24 23 22 26 26 N 1.31082 * 109.62733 * 0.68014 * 25 24 23 27 27 N 1.36320 * 120.56113 * 5.42088 * 18 17 7 28 28 H 1.09004 * 109.47042 * 60.00104 * 1 2 3 29 29 H 1.09003 * 109.47330 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47462 * 300.00325 * 1 2 3 31 31 H 1.08994 * 109.47037 * 239.99515 * 2 1 3 32 32 H 1.08998 * 109.46667 * 119.99677 * 2 1 3 33 33 H 1.09003 * 109.46756 * 60.00252 * 6 4 3 34 34 H 1.08994 * 109.47407 * 300.00497 * 6 4 3 35 35 H 0.97001 * 119.99901 * 180.02562 * 12 11 9 36 36 H 1.07997 * 120.41763 * 359.97383 * 19 18 17 37 37 H 1.09005 * 109.47183 * 90.00196 * 21 20 19 38 38 H 1.09003 * 109.46488 * 209.99733 * 21 20 19 39 39 H 1.08995 * 109.47579 * 329.99853 * 21 20 19 40 40 H 1.08002 * 125.18006 * 180.12255 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4486 2.8572 0.0001 8 1 5.7807 2.2493 -0.8414 9 6 6.0244 4.2443 -0.1242 10 1 6.6593 4.4925 -0.9619 11 6 5.7407 5.1967 0.8316 12 7 4.9680 4.8945 1.8520 13 14 6.4539 6.9163 0.6772 14 1 7.2837 6.9996 -0.5516 15 1 5.3489 7.9050 0.5956 16 1 7.2956 7.2115 1.8644 17 8 5.8945 2.2642 1.2215 18 6 7.1127 1.6770 1.2100 19 6 7.5624 0.9869 2.3025 20 6 8.8233 0.3933 2.2595 21 6 9.3328 -0.3697 3.4551 22 7 9.5711 0.4952 1.1816 23 6 9.1431 1.1673 0.1065 24 7 9.6940 1.4111 -1.0773 25 6 8.8565 2.1204 -1.8237 26 7 7.7611 2.3639 -1.1462 27 7 7.9108 1.7581 0.1079 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4700 0.8896 34 1 3.5853 3.4690 -0.8904 35 1 4.7681 5.5646 2.5242 36 1 6.9489 0.9036 3.1873 37 1 9.0373 -1.4156 3.3716 38 1 10.4200 -0.3014 3.4933 39 1 8.9098 0.0558 4.3650 40 1 9.0518 2.4543 -2.8321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229311283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:21 Heat of formation + Delta-G solvation = 0.151020 kcal Electronic energy + Delta-G solvation = -27823.734193 eV Core-core repulsion = 23834.710194 eV Total energy + Delta-G solvation = -3989.023999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.82914 -41.54965 -40.32037 -39.30833 -37.63596 -35.59701 -34.41701 -33.11952 -32.96372 -32.28663 -31.08103 -29.33246 -28.19358 -25.20835 -24.98417 -23.91479 -23.20734 -22.99526 -21.79744 -19.81948 -18.91815 -18.86842 -18.42336 -18.09337 -17.64711 -17.31290 -17.24959 -16.59450 -15.98974 -15.67960 -15.41899 -15.23541 -14.90670 -14.71655 -14.30995 -14.09435 -14.04710 -13.75545 -13.59335 -13.30486 -13.05509 -12.95734 -12.93360 -12.75754 -12.64154 -12.59964 -12.49977 -12.11803 -11.65173 -11.54509 -11.51025 -11.15412 -11.05410 -10.83075 -10.79160 -10.44758 -9.21416 -8.29417 -6.50762 -0.25464 -0.10595 0.90360 1.20444 1.30847 1.37394 1.46675 1.70600 1.73842 2.06939 2.30316 2.45790 2.48998 3.05722 3.24711 3.76911 3.82176 3.93380 3.97249 4.09035 4.12765 4.31071 4.35836 4.42090 4.55856 4.68698 4.80881 4.84759 4.86399 4.90286 4.94108 5.06261 5.10128 5.20913 5.35350 5.41306 5.46553 5.48466 5.66044 5.88216 6.19855 6.58892 6.71929 6.78226 7.01465 7.27163 8.71604 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008993 B = 0.006051 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.620834 B = 4625.969611 C = 6264.321168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.363 6.363 4 C 0.465 3.535 5 O -0.544 6.544 6 C -0.098 4.098 7 C 0.217 3.783 8 H 0.051 0.949 9 C -0.544 4.544 10 H 0.067 0.933 11 C 0.043 3.957 12 N -0.879 5.879 13 Si 0.949 3.051 14 H -0.275 1.275 15 H -0.265 1.265 16 H -0.287 1.287 17 O -0.283 6.283 18 C 0.420 3.580 19 C -0.302 4.302 20 C 0.262 3.738 21 C -0.096 4.096 22 N -0.526 5.526 23 C 0.449 3.551 24 N -0.566 5.566 25 C 0.231 3.769 26 N -0.332 5.332 27 N -0.365 5.365 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.271 0.729 36 H 0.190 0.810 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 -7.900 1.991 9.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.280 6.280 4 C 0.311 3.689 5 O -0.435 6.435 6 C -0.135 4.135 7 C 0.164 3.836 8 H 0.069 0.931 9 C -0.581 4.581 10 H 0.085 0.915 11 C -0.162 4.162 12 N -0.516 5.516 13 Si 0.775 3.225 14 H -0.200 1.200 15 H -0.190 1.190 16 H -0.213 1.213 17 O -0.184 6.184 18 C 0.256 3.744 19 C -0.329 4.329 20 C 0.104 3.896 21 C -0.153 4.153 22 N -0.251 5.251 23 C 0.089 3.911 24 N -0.302 5.302 25 C -0.070 4.070 26 N -0.161 5.161 27 N -0.157 5.157 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.208 0.792 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -3.496 -8.034 1.609 8.908 hybrid contribution -0.384 1.386 -0.225 1.455 sum -3.880 -6.648 1.384 7.821 Atomic orbital electron populations 1.21815 0.89819 1.04497 1.03757 1.23301 0.97524 0.79529 1.02122 1.86546 1.23959 1.33679 1.83844 1.24502 0.80508 0.93322 0.70570 1.90577 1.61183 1.44280 1.47427 1.21689 0.95000 0.89295 1.07530 1.20334 0.89861 0.93246 0.80118 0.93099 1.21536 1.31646 0.94563 1.10341 0.91528 1.25693 0.94209 1.01812 0.94438 1.69924 1.34934 1.35457 1.11270 0.85645 0.78705 0.80439 0.77732 1.19985 1.19007 1.21330 1.86290 1.25607 1.64834 1.41706 1.20561 0.82893 0.86893 0.84052 1.21196 1.01665 1.10451 0.99567 1.22408 0.86892 0.87458 0.92834 1.21013 1.03431 1.00099 0.90744 1.67923 1.34951 1.23291 0.98980 1.23232 0.80828 0.92238 0.94829 1.70811 1.31351 1.26899 1.01170 1.27120 0.86282 0.92030 1.01602 1.78806 1.24498 1.23211 0.89592 1.49405 1.16084 1.37798 1.12449 0.91135 0.87770 0.91322 0.91711 0.91864 0.85432 0.86131 0.91941 0.79236 0.86835 0.88760 0.86808 0.71953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.29 71.98 0.74 -1.84 16 2 C 0.05 1.32 6.19 71.98 0.45 1.76 16 3 O -0.36 -12.71 10.22 -51.42 -0.53 -13.24 16 4 C 0.47 19.29 7.84 71.24 0.56 19.85 16 5 O -0.54 -25.02 15.17 27.03 0.41 -24.61 16 6 C -0.10 -4.29 5.22 29.85 0.16 -4.14 16 7 C 0.22 10.66 1.33 29.85 0.04 10.69 16 8 H 0.05 2.64 5.56 -2.39 -0.01 2.62 16 9 C -0.54 -28.00 7.58 25.60 0.19 -27.80 16 10 H 0.07 3.55 7.05 -2.91 -0.02 3.53 16 11 C 0.04 2.19 5.24 84.65 0.44 2.63 16 12 N -0.88 -44.80 10.93 21.45 0.23 -44.57 16 13 Si 0.95 41.21 29.54 68.60 2.03 43.23 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 17 O -0.28 -14.03 8.41 -71.40 -0.60 -14.63 16 18 C 0.42 19.32 7.37 83.66 0.62 19.94 16 19 C -0.30 -10.98 9.67 22.22 0.21 -10.77 16 20 C 0.26 8.40 6.81 42.88 0.29 8.69 16 21 C -0.10 -1.77 10.18 71.24 0.73 -1.04 16 22 N -0.53 -20.74 10.40 -186.02 -1.93 -22.67 16 23 C 0.45 20.12 9.00 261.61 2.35 22.48 16 24 N -0.57 -24.42 11.26 -203.45 -2.29 -26.71 16 25 C 0.23 9.01 12.98 180.81 2.35 11.35 16 26 N -0.33 -15.25 7.74 -61.34 -0.47 -15.72 16 27 N -0.36 -17.15 3.69 -308.94 -1.14 -18.29 16 28 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 33 H 0.13 6.01 6.22 -2.39 -0.01 6.00 16 34 H 0.12 4.86 8.14 -2.39 -0.02 4.84 16 35 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 36 H 0.19 5.69 8.06 -2.91 -0.02 5.66 16 37 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.11 1.51 8.08 -2.39 -0.02 1.49 16 40 H 0.26 7.16 8.06 -2.91 -0.02 7.13 16 Total: -1.00 -70.86 344.84 5.91 -64.94 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 1.08 Total: 20.45 kcal Atomic # 6 Polarization: 42.67 SS G_CDS: 9.13 Total: 51.80 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -5.60 Total: -127.96 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.72 Total: -52.47 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -70.86 5.91 -64.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229311283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.094 kcal (2) G-P(sol) polarization free energy of solvation -70.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds